PathWhiz?

[cbizon]

We are getting a bunch of PathWhiz reactions I think from KG2. e.g. PathWhiz.Reaction:108552. I can't seem to find anything about them though - not a name, or anything else about them. The Pathwhiz site doesn't seem actively maintained and frequently crashes when I go to try to look these up, but even when it is working I can't seem to find them.

(Maybe I'm looking in the wrong place?)

Anyway, without any ability to know what this thing is, do they provide any value? I can filter them out in ARAGORN but are they useful to anybody?

[ecwood]

For that reaction, there is an info page on it here: https://pathbank.org/lims#/reactions/108552 (you have to create an account or login as a guest to view it). It seems to have a name of "Fructose 6-phosphate + L-Glutamine → Glucosamine 6-phosphate + L-Glutamic acid" on that site. You are correct that they do not seem to have names in RTX-KG2. We included them in our ETL of SMPDB and PathWhiz because they connect many of the compounds and pathways in those databases. We may need to consider a way to make them more effective to users.

[cbizon]

Thanks @ecwood ! FWIW, I do think it would be very helpful to at least get the name and/or some kind of linkout on these reactions.

[cbizon]

You don't happen to have a list of those reactions do you? That site is insanely slow for me...