From 3488401263dc4868ebca7d5bdf91ee851a7713de Mon Sep 17 00:00:00 2001 From: ecwood Date: Mon, 2 Sep 2024 14:11:01 -0700 Subject: [PATCH] #408 #398 curl problems --- extract/extract-clinicaltrialskg.sh | 5 ++++- 1 file changed, 4 insertions(+), 1 deletion(-) diff --git a/extract/extract-clinicaltrialskg.sh b/extract/extract-clinicaltrialskg.sh index 95278512..86b6a799 100755 --- a/extract/extract-clinicaltrialskg.sh +++ b/extract/extract-clinicaltrialskg.sh @@ -24,7 +24,10 @@ version="2.2.6" clinicaltrialskg_download_link="https://db.systemsbiology.net/gestalt/KG/clinical_trials_kg_edges_v${version}.tsv" echo "# ${version}" > ${clinicaltrialskg_output_file} -${curl_get} ${clinicaltrialskg_download_link} >> ${clinicaltrialskg_output_file} +# ${curl_get} ${clinicaltrialskg_download_link} >> ${clinicaltrialskg_output_file} + +# Short term fix because download link is not resolving and I cannot identify the correct download link +${aws_s3_cp} s3://${s3_bucket}/clinicaltrialskg-edges.tsv ${clinicaltrialskg_output_file} date echo "================= finishing extract-clinicaltrialskg.sh ==================" \ No newline at end of file