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Pin versions for compatibility with dolfinx v0.6.0 #1102

Pin versions for compatibility with dolfinx v0.6.0

Pin versions for compatibility with dolfinx v0.6.0 #1102

Workflow file for this run

name: RBniCSx CI
on:
push:
branches:
- "**"
pull_request:
branches:
- main
schedule:
- cron: "0 5 * * *"
workflow_call:
workflow_dispatch:
jobs:
test:
if: >-
(
(
github.event_name == 'schedule'
&& github.repository == 'RBniCS/RBniCSx'
) || (
github.event_name != 'schedule'
&& !(
contains(github.event.head_commit.message, '[ci skip]')
|| contains(github.event.head_commit.message, '[skip ci]')
)
)
)
runs-on: ubuntu-latest
strategy:
matrix:
include:
- backend: dolfinx-real
container: ghcr.io/fenics/dolfinx/dolfinx:v0.6.0-r1
setup_container: |
. /usr/local/bin/dolfinx-real-mode
echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV
echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV
echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV
- backend: dolfinx-complex
container: ghcr.io/fenics/dolfinx/dolfinx:v0.6.0-r1
setup_container: |
. /usr/local/bin/dolfinx-complex-mode
echo "PETSC_ARCH=$PETSC_ARCH" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=$LD_LIBRARY_PATH" >> $GITHUB_ENV
echo "PYTHONPATH=$PYTHONPATH" >> $GITHUB_ENV
echo "PKG_CONFIG_PATH=$PKG_CONFIG_PATH" >> $GITHUB_ENV
fail-fast: false
container:
image: ${{ matrix.container }}
options: --user root
steps:
- uses: actions/checkout@v3
with:
ref: dolfinx-v0.6.0
- name: Setup container
run: ${{ matrix.setup_container }}
- name: Install RBniCSx
run: |
python3 -m pip install .[docs,lint,tests,tutorials]
python3 -c "import rbnicsx._cpp"
shell: bash
- name: Run documentation generation
run: |
cd docs && make html
- name: Run unit tests (serial)
run: |
COVERAGE_UNIT_OMIT=""
PYTEST_UNIT_OPTIONS=""
COVERAGE_FILE=.coverage_unit_serial python3 -m coverage run --source=rbnicsx --omit="${COVERAGE_UNIT_OMIT}" -m pytest ${PYTEST_UNIT_OPTIONS} tests/unit
- name: Run unit tests (parallel)
run: |
COVERAGE_UNIT_OMIT=""
PYTEST_UNIT_OPTIONS=""
COVERAGE_FILE=.coverage_unit_parallel mpirun -n 2 python3 -m coverage run --source=rbnicsx --parallel-mode --omit="${COVERAGE_UNIT_OMIT}" -m pytest ${PYTEST_UNIT_OPTIONS} tests/unit
- name: Combine coverage reports
run: |
python3 -m coverage combine .coverage*
python3 -m coverage report --fail-under=100 --show-missing --skip-covered
- name: Import modules at least once, so that tutorials duration is not affected by module setup
run: |
python3 -m pytest --durations=0 --durations-min=1.0 tutorials/.imports.ipynb
- name: Run tutorials (serial)
run: |
python3 -m pytest --tag-collapse --durations=0 --durations-min=1.0 tutorials
- name: Run tutorials (parallel)
run: |
python3 -m pytest --tag-collapse --np=2 --durations=0 --durations-min=1.0 tutorials
- name: Upload tutorials logs as an artifact in case of failure
if: failure() || cancelled()
uses: actions/upload-artifact@v3
with:
name: "tutorials-logs-${{ matrix.backend }}"
path: |
tutorials/**/.ipynb_pytest/**/*.log*