diff --git a/docs/user/commands/fly.html b/docs/user/commands/fly.html index 3c4d7bb7d7..d7370fca30 100644 --- a/docs/user/commands/fly.html +++ b/docs/user/commands/fly.html @@ -40,6 +40,9 @@

Usage: (start and end) at a time, whereas fly can consider multiple views and generate a path that visits and leaves intermediate views without discontinuities in motion. +However, fly does not interpolate +clipping plane positions, whereas +view does. See also: making movies

@@ -80,5 +83,5 @@

Usage:

UCSF Resource for Biocomputing, Visualization, and Informatics / -March 2021
+November 2023 diff --git a/docs/user/commands/view.html b/docs/user/commands/view.html index e2d4680b8b..a170a3e325 100644 --- a/docs/user/commands/view.html +++ b/docs/user/commands/view.html @@ -229,6 +229,9 @@

Named Views and Transitions

fly command can smoothly traverse a series of multiple views, generating a path that visits and leaves the intermediate views without discontinuities in motion. +However, an advantage of the view +command is that it interpolates clipping plane +positions, but fly does not.

@@ -322,5 +325,5 @@

Using Transformation Matrices

UCSF Resource for Biocomputing, Visualization, and Informatics / -October 2023
+November 2023 diff --git a/docs/user/tools/segmentations.html b/docs/user/tools/segmentations.html index c22b476ce6..848f57f276 100644 --- a/docs/user/tools/segmentations.html +++ b/docs/user/tools/segmentations.html @@ -76,18 +76,21 @@

Tool: Segmentations

Dialog Settings

Starting the Segmentations tool automatically sets the view layout -to four panels: axial, coronal, and sagittal slices along with a 3D rendering +according to the tool's General settings.

-The View Layout can be switched among: + +The View layout can be switched among:

The Model of interest (the medical image to segment and thus to show @@ -97,11 +100,12 @@

Dialog Settings

namely the Model Panel and/or show/hide commands.

-The Plane Guidelines option controls whether each slice view should +The Plane guidelines option controls whether each slice view should contain crosshairs showing the positions of the other slice views.

-Min and max sliders set the Intensity Range that can be added +The Restrict segmentation to intensity range option allows limiting +the range of data values that can be added to a segmentation model during interactive editing; only those pixels with data values within the specified range will be added even when a larger area is swept out by the segmentation cursor. @@ -126,19 +130,162 @@

Creating and Editing Segmentations

editing the metadata associated with the segmentation model, and Save saves it as DICOM with the SEG modality.

-The segmentation cursor is shown as a red circle; +In the slice views, the segmentation cursor is shown as a red circle; left mouse click-drag sweeps out an area in the currently displayed data plane, whereas additionally pressing Shift erases the corresponding area from the segmentation. Shift-scroll adjusts the segmentation cursor size. The area swept out by the segmentation cursor in a slice view will be added to the current segmentation, unless further restricted by intensity range. +These slice-view mouse mode assignments are listed in the +Mouse (2D Slices) settings +but cannot be changed currently. +

+Segmentations can also be edited in the desktop 3D view according to the +Mouse (3D) settings +and in virtual reality according to the +VR Controller settings

Clicking Help opens this page in the Help Viewer.

+ +

+[back to top: Segmentations] +

+

Segmentations Settings (Preferences)

+

+ +Clicking the “gear” icon near the top right corner of +the Segmentations tool shows its settings in a separate window, +with sections: +

+ +

+ +Any changes in settings apply to the current session, +but they are not saved as preferences +for future sessions unless OK is clicked. Both OK and +Cancel dismiss the dialog, but Cancel does not save the settings. +

+ + +

← +General +– tool-associated graphics window and device behaviors +

+ + + +

← +Mouse (2D Slices) +– mouse assignments in the axial, coronal, and sagittal slice views. +Current limitations: not adjustable, +and only the left-mouse assignment works with trackpad. +

+ + +

← +Mouse (3D) +– mouse assignments in the desktop 3D view +when Set 3D mouse modes... is on +and the desktop 3D-only layout is chosen. +Current limitation: does not work with trackpad. +

+Assignments can be made to each of the following, + +...with available functions: + + + +

← +VR Controller +– assignments to the right hand controller +when Set VR controller modes... is on +and the VR 3D-only layout is chosen. +Available functions: +

+ +
UCSF Resource for Biocomputing, Visualization, and Informatics / -September 2023
+November 2023