From 2ca8134a060088c0fddab2c4403b5435788a1e54 Mon Sep 17 00:00:00 2001
From: Pavel Zwerschke <pavelzw@gmail.com>
Date: Fri, 2 Feb 2024 15:38:39 +0100
Subject: [PATCH 1/3] Add test to default env

---
 pixi.lock | 2367 +++++++++++++++++++++++++++++++++++------------------
 pixi.toml |    2 +
 2 files changed, 1573 insertions(+), 796 deletions(-)

diff --git a/pixi.lock b/pixi.lock
index dc9924d..f119816 100644
--- a/pixi.lock
+++ b/pixi.lock
@@ -21,26 +21,43 @@ environments:
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+  - python >=3.12.0rc3,<3.13.0a0 *_cpython
+  - python_abi 3.12.* *_cp312
+  - yaml >=0.2.5,<0.3.0a0
+  license: MIT
+  license_family: MIT
+  size: 186843
+  timestamp: 1695373817252
+- kind: conda
+  name: pyyaml
+  version: 6.0.1
+  build: py312he70551f_1
+  build_number: 1
+  subdir: win-64
+  url: https://conda.anaconda.org/conda-forge/win-64/pyyaml-6.0.1-py312he70551f_1.conda
+  sha256: a72fa8152791b4738432f270e70b3a9a4d583ef059a78aa1c62f4b4ab7b15494
+  md5: f91e0baa89ba21166916624ba7bfb422
+  depends:
+  - python >=3.12.0rc3,<3.13.0a0
+  - python_abi 3.12.* *_cp312
+  - ucrt >=10.0.20348.0
+  - vc >=14.2,<15
+  - vc14_runtime >=14.29.30139
+  - yaml >=0.2.5,<0.3.0a0
+  license: MIT
+  license_family: MIT
+  size: 167932
+  timestamp: 1695374097139
 - kind: conda
   name: readline
   version: '8.2'
@@ -16054,6 +16578,21 @@ packages:
   license_family: BSD
   size: 3318875
   timestamp: 1699202167581
+- kind: conda
+  name: tomli
+  version: 2.0.1
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/tomli-2.0.1-pyhd8ed1ab_0.tar.bz2
+  sha256: 4cd48aba7cd026d17e86886af48d0d2ebc67ed36f87f6534f4b67138f5a5a58f
+  md5: 5844808ffab9ebdb694585b50ba02a96
+  depends:
+  - python >=3.7
+  license: MIT
+  license_family: MIT
+  size: 15940
+  timestamp: 1644342331069
 - kind: conda
   name: tomli
   version: 2.0.1
@@ -16143,6 +16682,122 @@ packages:
   license_family: PROPRIETARY
   size: 1283972
   timestamp: 1666630199266
+- kind: conda
+  name: ukkonen
+  version: 1.0.1
+  build: py312h0d7def4_4
+  build_number: 4
+  subdir: win-64
+  url: https://conda.anaconda.org/conda-forge/win-64/ukkonen-1.0.1-py312h0d7def4_4.conda
+  sha256: f5f7550991ca647f69b67b9188c7104a3456122611dd6a6e753cff555e45dfd9
+  md5: 57cfbb8ce3a1800bd343bf6afba6f878
+  depends:
+  - cffi
+  - python >=3.12.0rc3,<3.13.0a0
+  - python_abi 3.12.* *_cp312
+  - ucrt >=10.0.20348.0
+  - vc >=14.2,<15
+  - vc14_runtime >=14.29.30139
+  license: MIT
+  license_family: MIT
+  size: 17235
+  timestamp: 1695549871621
+- kind: conda
+  name: ukkonen
+  version: 1.0.1
+  build: py312h1e303ce_4
+  build_number: 4
+  subdir: linux-ppc64le
+  url: https://conda.anaconda.org/conda-forge/linux-ppc64le/ukkonen-1.0.1-py312h1e303ce_4.conda
+  sha256: 74cc077845106fd1c451893ddfad9c5384afb13781a029cffe988b40dda093ef
+  md5: 40a69656eb37ffebb4abe1295a6b4dbb
+  depends:
+  - cffi
+  - libgcc-ng >=12
+  - libstdcxx-ng >=12
+  - python >=3.12.0rc3,<3.13.0a0
+  - python >=3.12.0rc3,<3.13.0a0 *_cpython
+  - python_abi 3.12.* *_cp312
+  license: MIT
+  license_family: MIT
+  size: 15113
+  timestamp: 1695549684438
+- kind: conda
+  name: ukkonen
+  version: 1.0.1
+  build: py312h389731b_4
+  build_number: 4
+  subdir: osx-arm64
+  url: https://conda.anaconda.org/conda-forge/osx-arm64/ukkonen-1.0.1-py312h389731b_4.conda
+  sha256: 7336cf66feba973207f4903c20b05c3c82e351246df4b6113f72d92b9ee55b81
+  md5: 6407429e0969b58b8717dbb4c6c15513
+  depends:
+  - cffi
+  - libcxx >=15.0.7
+  - python >=3.12.0rc3,<3.13.0a0
+  - python >=3.12.0rc3,<3.13.0a0 *_cpython
+  - python_abi 3.12.* *_cp312
+  license: MIT
+  license_family: MIT
+  size: 13948
+  timestamp: 1695549890285
+- kind: conda
+  name: ukkonen
+  version: 1.0.1
+  build: py312h49ebfd2_4
+  build_number: 4
+  subdir: osx-64
+  url: https://conda.anaconda.org/conda-forge/osx-64/ukkonen-1.0.1-py312h49ebfd2_4.conda
+  sha256: efca19a5e73e4aacfc5e90a5389272b2508e41dc4adab9eb5353c5200ba37041
+  md5: 4e6b5a8025cd8fd97b3cfe103ffce6b1
+  depends:
+  - cffi
+  - libcxx >=15.0.7
+  - python >=3.12.0rc3,<3.13.0a0
+  - python_abi 3.12.* *_cp312
+  license: MIT
+  license_family: MIT
+  size: 13246
+  timestamp: 1695549689363
+- kind: conda
+  name: ukkonen
+  version: 1.0.1
+  build: py312h8572e83_4
+  build_number: 4
+  subdir: linux-64
+  url: https://conda.anaconda.org/conda-forge/linux-64/ukkonen-1.0.1-py312h8572e83_4.conda
+  sha256: f9a4384d466f4d8b5b497d951329dd4407ebe02f8f93456434e9ab789d6e23ce
+  md5: 52c9e25ee0a32485a102eeecdb7eef52
+  depends:
+  - cffi
+  - libgcc-ng >=12
+  - libstdcxx-ng >=12
+  - python >=3.12.0rc3,<3.13.0a0
+  - python_abi 3.12.* *_cp312
+  license: MIT
+  license_family: MIT
+  size: 14050
+  timestamp: 1695549556745
+- kind: conda
+  name: ukkonen
+  version: 1.0.1
+  build: py312h8f0b210_4
+  build_number: 4
+  subdir: linux-aarch64
+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/ukkonen-1.0.1-py312h8f0b210_4.conda
+  sha256: 1660c56757ef39b3b467f1e2d6d51d236d36d426afa701dcbf71887e93c9f095
+  md5: 6761f5b303f3fcb695ae5f297cde7bde
+  depends:
+  - cffi
+  - libgcc-ng >=12
+  - libstdcxx-ng >=12
+  - python >=3.12.0rc3,<3.13.0a0
+  - python >=3.12.0rc3,<3.13.0a0 *_cpython
+  - python_abi 3.12.* *_cp312
+  license: MIT
+  license_family: MIT
+  size: 14812
+  timestamp: 1695549601083
 - kind: conda
   name: urllib3
   version: 2.2.0
@@ -16232,6 +16887,24 @@ packages:
   license_family: Proprietary
   size: 749868
   timestamp: 1702511239004
+- kind: conda
+  name: virtualenv
+  version: 20.25.0
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/virtualenv-20.25.0-pyhd8ed1ab_0.conda
+  sha256: 50827c3721a9dbf973b568709d4381add2a6552fa562f26a385c5edc16a534af
+  md5: c119653cba436d8183c27bf6d190e587
+  depends:
+  - distlib <1,>=0.3.7
+  - filelock <4,>=3.12.2
+  - platformdirs <5,>=3.9.1
+  - python >=3.8
+  license: MIT
+  license_family: MIT
+  size: 3122816
+  timestamp: 1701458945559
 - kind: conda
   name: vs2015_runtime
   version: 14.36.32532
@@ -16387,6 +17060,108 @@ packages:
   license: LGPL-2.1 and GPL-2.0
   size: 443552
   timestamp: 1660348160401
+- kind: conda
+  name: yaml
+  version: 0.2.5
+  build: h0d85af4_2
+  build_number: 2
+  subdir: osx-64
+  url: https://conda.anaconda.org/conda-forge/osx-64/yaml-0.2.5-h0d85af4_2.tar.bz2
+  sha256: 5301417e2c8dea45b401ffee8df3957d2447d4ce80c83c5ff151fc6bfe1c4148
+  md5: d7e08fcf8259d742156188e8762b4d20
+  license: MIT
+  license_family: MIT
+  size: 84237
+  timestamp: 1641347062780
+- kind: conda
+  name: yaml
+  version: 0.2.5
+  build: h3422bc3_2
+  build_number: 2
+  subdir: osx-arm64
+  url: https://conda.anaconda.org/conda-forge/osx-arm64/yaml-0.2.5-h3422bc3_2.tar.bz2
+  sha256: 93181a04ba8cfecfdfb162fc958436d868cc37db504c58078eab4c1a3e57fbb7
+  md5: 4bb3f014845110883a3c5ee811fd84b4
+  license: MIT
+  license_family: MIT
+  size: 88016
+  timestamp: 1641347076660
+- kind: conda
+  name: yaml
+  version: 0.2.5
+  build: h4e0d66e_2
+  build_number: 2
+  subdir: linux-ppc64le
+  url: https://conda.anaconda.org/conda-forge/linux-ppc64le/yaml-0.2.5-h4e0d66e_2.tar.bz2
+  sha256: 1fdf204ef2126b10b1e783e862c49a1fdadfb440c7c51cd49df792000450b1d1
+  md5: e480df649632a5f96b7a24dfc213fd3d
+  depends:
+  - libgcc-ng >=9.4.0
+  license: MIT
+  license_family: MIT
+  size: 109261
+  timestamp: 1641348050084
+- kind: conda
+  name: yaml
+  version: 0.2.5
+  build: h7f98852_2
+  build_number: 2
+  subdir: linux-64
+  url: https://conda.anaconda.org/conda-forge/linux-64/yaml-0.2.5-h7f98852_2.tar.bz2
+  sha256: a4e34c710eeb26945bdbdaba82d3d74f60a78f54a874ec10d373811a5d217535
+  md5: 4cb3ad778ec2d5a7acbdf254eb1c42ae
+  depends:
+  - libgcc-ng >=9.4.0
+  license: MIT
+  license_family: MIT
+  size: 89141
+  timestamp: 1641346969816
+- kind: conda
+  name: yaml
+  version: 0.2.5
+  build: h8ffe710_2
+  build_number: 2
+  subdir: win-64
+  url: https://conda.anaconda.org/conda-forge/win-64/yaml-0.2.5-h8ffe710_2.tar.bz2
+  sha256: 4e2246383003acbad9682c7c63178e2e715ad0eb84f03a8df1fbfba455dfedc5
+  md5: adbfb9f45d1004a26763652246a33764
+  depends:
+  - vc >=14.1,<15.0a0
+  - vs2015_runtime >=14.16.27012
+  license: MIT
+  license_family: MIT
+  size: 63274
+  timestamp: 1641347623319
+- kind: conda
+  name: yaml
+  version: 0.2.5
+  build: hf897c2e_2
+  build_number: 2
+  subdir: linux-aarch64
+  url: https://conda.anaconda.org/conda-forge/linux-aarch64/yaml-0.2.5-hf897c2e_2.tar.bz2
+  sha256: 8bc601d6dbe249eba44b3c456765265cd8f42ef1e778f8df9b0c9c88b8558d7e
+  md5: b853307650cb226731f653aa623936a4
+  depends:
+  - libgcc-ng >=9.4.0
+  license: MIT
+  license_family: MIT
+  size: 92927
+  timestamp: 1641347626613
+- kind: conda
+  name: zipp
+  version: 3.17.0
+  build: pyhd8ed1ab_0
+  subdir: noarch
+  noarch: python
+  url: https://conda.anaconda.org/conda-forge/noarch/zipp-3.17.0-pyhd8ed1ab_0.conda
+  sha256: bced1423fdbf77bca0a735187d05d9b9812d2163f60ab426fc10f11f92ecbe26
+  md5: 2e4d6bc0b14e10f895fc6791a7d9b26a
+  depends:
+  - python >=3.8
+  license: MIT
+  license_family: MIT
+  size: 18954
+  timestamp: 1695255262261
 - kind: conda
   name: zipp
   version: 3.17.0
diff --git a/pixi.toml b/pixi.toml
index e6a182b..d14cccd 100644
--- a/pixi.toml
+++ b/pixi.toml
@@ -61,6 +61,7 @@ pre-commit = "*"
 lint = "pre-commit run -a"
 
 [environments]
+default = ["test"]
 skl11 = ["py38", "skl11", "test"]
 skl12 = ["py38", "skl12", "test"]
 skl13 = ["py38", "skl13", "test"]
@@ -75,3 +76,4 @@ py39 = ["py39", "test"]
 py310 = ["py310", "test"]
 py311 = ["py311", "test"]
 py312 = ["py312", "test"]
+lint = ["lint"]

From a01c4b028f01216fc57beca91f5c3d79a84f3b15 Mon Sep 17 00:00:00 2001
From: Pavel Zwerschke <pavelzw@gmail.com>
Date: Fri, 2 Feb 2024 15:39:30 +0100
Subject: [PATCH 2/3] improve ci

---
 .github/workflows/benchmark.yml | 6 ++----
 1 file changed, 2 insertions(+), 4 deletions(-)

diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml
index 1f87b56..1bf3f99 100644
--- a/.github/workflows/benchmark.yml
+++ b/.github/workflows/benchmark.yml
@@ -15,10 +15,8 @@ jobs:
       - uses: actions/checkout@v4
       - name: Set up conda env
         uses: prefix-dev/setup-pixi@v0.5.0
-        with:
-          environments: py312
       - name: Install repository
-        run: pixi run -e py312 postinstall
+        run: pixi run postinstall
       - name: Cache models
         uses: actions/cache@v4
         env:
@@ -31,7 +29,7 @@ jobs:
           python benchmark.py
           echo "_(benchmark **${{ github.run_id }}** / attempt **${{ github.run_attempt }}**)_" >> result.md
           cat benchmark.md >> result.md
-        shell: pixi run -e py312 bash {0}
+        shell: pixi run bash {0}
       - name: Comment on PR
         uses: actions/github-script@v7
         if: github.event_name == 'pull_request'

From 6ab46f2dd18fd66a7410076bde9d84dc7da2833b Mon Sep 17 00:00:00 2001
From: Pavel Zwerschke <pavelzw@gmail.com>
Date: Fri, 2 Feb 2024 15:56:53 +0100
Subject: [PATCH 3/3] remove --environment from readme

---
 README.md | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/README.md b/README.md
index 200322d..860918e 100644
--- a/README.md
+++ b/README.md
@@ -118,10 +118,10 @@ You can install the package in development mode using the new conda package mana
 ❯ cd slim-trees
 
 ❯ pixi install
-❯ pixi run --environment py312 postinstall
-❯ pixi run --environment py312 test
+❯ pixi run postinstall
+❯ pixi run test
 [...]
-❯ pixi run --environment py312 python
+❯ pixi run py312 python
 >>> import slim_trees
 [...]
 ```