diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml index d5b5eec..fcd9934 100644 --- a/.github/workflows/benchmark.yml +++ b/.github/workflows/benchmark.yml @@ -14,14 +14,11 @@ jobs: steps: - uses: actions/checkout@v4 - name: Set up conda env - uses: mamba-org/setup-micromamba@v1 + uses: prefix-dev/setup-pixi@v0.5.0 with: - environment-file: environment-deprecated.yml - cache-environment: true - create-args: python=3.11 + environments: py312 - name: Install repository - run: python -m pip install --no-build-isolation --no-deps --disable-pip-version-check -e . - shell: bash -el {0} + run: pixi run -e py312 postinstall - name: Cache models uses: actions/cache@v3 env: @@ -30,13 +27,12 @@ jobs: path: examples/benchmark_models key: models-${{ hashFiles('benchmark.py', '.github/workflows/benchmark.yml') }} - name: Run benchmark - shell: bash -el {0} run: | python benchmark.py echo "_(benchmark **${{ github.run_id }}** / attempt **${{ github.run_attempt }}**)_" >> result.md cat benchmark.md >> result.md + shell: pixi run -e py312 bash {0} - name: Comment on PR - # thollander/actions-comment-pull-request is not whitelisted uses: actions/github-script@v7 if: github.event_name == 'pull_request' with: diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index 5e20223..e8bcdbf 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -8,88 +8,53 @@ concurrency: group: ${{ github.workflow }}-${{ github.ref }} cancel-in-progress: true -defaults: - run: - shell: bash -el {0} - jobs: linux-unittests: - name: >- - Unit tests - Python ${{ matrix.PYTHON_VERSION }} - ${{ matrix.SKLEARN_VERSION }}${{ matrix.LGBM_VERSION }} + name: Unit tests - ${{ matrix.env }} timeout-minutes: 15 runs-on: ubuntu-latest strategy: fail-fast: false matrix: - include: - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: 'scikit-learn=1.1', LGBM_VERSION: '' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: 'scikit-learn=1.2', LGBM_VERSION: '' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: 'scikit-learn=1.3', LGBM_VERSION: '' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: '', LGBM_VERSION: 'lightgbm=3.2' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: '', LGBM_VERSION: 'lightgbm=3.3' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: '', LGBM_VERSION: 'lightgbm=4.0' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: '', LGBM_VERSION: 'lightgbm=4.1' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: '', LGBM_VERSION: 'lightgbm=4.2' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: '', LGBM_VERSION: 'lightgbm=4.3' } - - { PYTHON_VERSION: '3.8', SKLEARN_VERSION: '', LGBM_VERSION: '' } - - { PYTHON_VERSION: '3.9', SKLEARN_VERSION: '', LGBM_VERSION: '' } - - { PYTHON_VERSION: '3.10', SKLEARN_VERSION: '', LGBM_VERSION: '' } - - { PYTHON_VERSION: '3.11', SKLEARN_VERSION: '', LGBM_VERSION: '' } - - { PYTHON_VERSION: '3.12', SKLEARN_VERSION: '', LGBM_VERSION: '' } + env: + - skl11 + - skl12 + - skl13 + - lgbm32 + - lgbm33 + - lgbm40 + - lgbm41 + - lgbm42 + - lgbm43 + - py38 + - py39 + - py310 + - py311 + - py312 steps: - uses: actions/checkout@v4 - - name: Set up conda env - uses: mamba-org/setup-micromamba@v1 + - name: Set up pixi + uses: prefix-dev/setup-pixi@v0.5.0 with: - cache-environment: true - environment-file: environment-deprecated.yml - create-args: >- - python=${{ matrix.PYTHON_VERSION }} - pytest-md - pytest-emoji - ${{ matrix.SKLEARN_VERSION }}${{ matrix.LGBM_VERSION }} + environments: ${{ matrix.env }} - name: Install repository - run: python -m pip install --no-build-isolation --no-deps --disable-pip-version-check -e . - - name: Run unittests - uses: pavelzw/pytest-action@v2 - with: - custom-arguments: ${{ matrix.SKLEARN_VERSION != '' && '-k sklearn' || '' }}${{ matrix.LGBM_VERSION != '' && ' -k lgbm' || '' }} - report-title: >- - Unit tests - Python ${{ matrix.PYTHON_VERSION }} - ${{ matrix.SKLEARN_VERSION }}${{ matrix.LGBM_VERSION }} - - linux-unittests-pixi: - name: Unit tests Pixi - timeout-minutes: 15 - runs-on: ubuntu-latest - strategy: - fail-fast: false - steps: - - uses: actions/checkout@v4 - - uses: prefix-dev/setup-pixi@v0.4.1 - - name: Install environment - run: | - pixi run postinstall + run: pixi run -e ${{ matrix.env }} postinstall - name: Run unittests uses: pavelzw/pytest-action@v2 with: - custom-pytest: pixi run test - report-title: Unit tests Linux Pixi + custom-pytest: pixi run -e ${{ matrix.env }} test + report-title: Unit tests - ${{ matrix.env }} - pre-commit: # todo switch to pre-commit.ci - name: "Pre-commit checks" + pre-commit: + name: pre-commit checks timeout-minutes: 15 runs-on: ubuntu-latest steps: - name: Checkout branch uses: actions/checkout@v4 - - name: Install Python 3.11 - uses: actions/setup-python@v5 + - uses: quantco/pre-commit-conda@v1 with: - python-version: 3.11 - - name: Run pre-commit checks - uses: pre-commit/action@v3.0.0 + python-version: '3.8' lint-workflow-files: name: "Lint workflow files" diff --git a/environment-deprecated.yml b/environment-deprecated.yml deleted file mode 100644 index a4c0ccc..0000000 --- a/environment-deprecated.yml +++ /dev/null @@ -1,14 +0,0 @@ -# use pixi.toml instead! -name: slim_trees -channels: - - conda-forge - - nodefaults -dependencies: - - lightgbm >=3.2,<4.4 - - numpy - - python >=3.8 - - pre-commit - - pandas - - scikit-learn >=1.1.0,<1.4 - - pytest >=7.0 - - hatchling diff --git a/pixi.lock b/pixi.lock index 1ab17f7..dc9924d 100644 --- a/pixi.lock +++ b/pixi.lock @@ -1,7236 +1,11814 @@ -metadata: - content_hash: - linux-64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - linux-aarch64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - linux-ppc64le: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - osx-64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - osx-arm64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - win-64: e90c2ee71ad70fc0a1c8302029533a7d1498f2bffcd0eaa8d2934700e775dc1d - channels: - - url: https://conda.anaconda.org/conda-forge/ - used_env_vars: [] - platforms: - - linux-64 - - linux-aarch64 - - linux-ppc64le - - osx-64 - - osx-arm64 - - win-64 - sources: [] - time_metadata: null - git_metadata: null - inputs_metadata: null - custom_metadata: null -package: -- platform: linux-64 +version: 4 +environments: + default: + channels: + - 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