diff --git a/R/process_costs_rmd.R b/R/process_costs_rmd.R index 2efc25dd8..5d97d705f 100644 --- a/R/process_costs_rmd.R +++ b/R/process_costs_rmd.R @@ -14,7 +14,8 @@ process_costs_rmd <- function(file_name) { stringr::fixed("Rmd", ignore_case = TRUE) )) { cli::cli_abort( - "{.arg file_name} must be an {.code .Rmd} not a {.code .{fs::path_ext(file_name)}}." + "{.arg file_name} must be an {.code .Rmd} not a + {.code .{fs::path_ext(file_name)}}." ) } @@ -34,7 +35,12 @@ process_costs_rmd <- function(file_name) { output_file <- get_file_path( directory = output_dir, - file_name = fs::path_ext_set(stringr::str_glue("{fs::path_ext_remove(file_name)}-{latest_update()}-{date_today}"), "html"), + file_name = fs::path_ext_set( + stringr::str_glue( + "{fs::path_ext_remove(file_name)}-{latest_update()}-{date_today}" + ), + "html" + ), check_mode = "write" ) @@ -55,7 +61,7 @@ process_costs_rmd <- function(file_name) { #' #' @description This will read and process the #' District Nursing cost lookup, it will return the final data -#' but also write this out as a rds. +#' and write it to disk. #' #' @param file_path Path to the cost lookup. #' @@ -73,7 +79,7 @@ process_costs_dn_rmd <- function(file_path = get_dn_costs_path()) { #' #' @description This will read and process the #' care homes cost lookup, it will return the final data -#' but also write this out as a rds. +#' and write it to disk. #' #' @inheritParams process_costs_dn_rmd #' @@ -91,7 +97,7 @@ process_costs_ch_rmd <- function(file_path = get_ch_costs_path()) { #' #' @description This will read and process the #' GP ooh cost lookup, it will return the final data -#' but also write this out as a rds. +#' and write it to disk. #' #' @inheritParams process_costs_dn_rmd #' @@ -109,7 +115,7 @@ process_costs_gp_ooh_rmd <- function(file_path = get_gp_ooh_costs_path()) { #' #' @description This will read and process the #' Home Care cost lookup, it will return the final data -#' but also write this out as a rds. +#' and write it to disk. #' #' @inheritParams process_costs_dn_rmd #' diff --git a/R/process_extract_acute.R b/R/process_extract_acute.R index 107b346c9..70ff29370 100644 --- a/R/process_extract_acute.R +++ b/R/process_extract_acute.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' acute extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. @@ -61,9 +61,7 @@ process_extract_acute <- function(data, year, write_to_disk = TRUE) { levels = 0L:8L )) - - ## save outfile --------------------------------------- - outfile <- acute_clean %>% + acute_processed <- acute_clean %>% dplyr::select( "year", "recid", @@ -113,10 +111,11 @@ process_extract_acute <- function(data, year, write_to_disk = TRUE) { dplyr::arrange(.data$chi, .data$record_keydate1) if (write_to_disk) { - # Save as rds file - outfile %>% - write_file(get_source_extract_path(year, "Acute", check_mode = "write")) + write_file( + acute_processed, + get_source_extract_path(year, "Acute", check_mode = "write") + ) } - return(outfile) + return(acute_processed) } diff --git a/R/process_extract_ae.R b/R/process_extract_ae.R index 7e61db018..95dfd99be 100644 --- a/R/process_extract_ae.R +++ b/R/process_extract_ae.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' A&E extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. @@ -237,9 +237,7 @@ process_extract_ae <- function(data, year, write_to_disk = TRUE) { .data$keytime2 ) - - # Save outfile---------------------------------------- - outfile <- matched_ae_data %>% + ae_processed <- matched_ae_data %>% dplyr::select( "year", "recid", @@ -294,10 +292,11 @@ process_extract_ae <- function(data, year, write_to_disk = TRUE) { ) if (write_to_disk) { - # Save as rds file - outfile %>% - write_file(get_source_extract_path(year, "AE", check_mode = "write")) + write_file( + ae_processed, + get_source_extract_path(year, "AE", check_mode = "write") + ) } - return(outfile) + return(ae_processed) } diff --git a/R/process_extract_alarms_telecare.R b/R/process_extract_alarms_telecare.R index 15cd79809..9a0745a04 100644 --- a/R/process_extract_alarms_telecare.R +++ b/R/process_extract_alarms_telecare.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' (year specific) Alarms Telecare extract, it will return the final data -#' but also write this out as rds. +#' and (optionally) write it to disk. #' #' @inheritParams process_extract_care_home #' diff --git a/R/process_extract_care_home.R b/R/process_extract_care_home.R index 757e47f6c..cbf6d417c 100644 --- a/R/process_extract_care_home.R +++ b/R/process_extract_care_home.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' (year specific) Care Home extract, it will return the final data -#' but also write this out as rds. +#' and (optionally) write it to disk. #' #' @param data The full processed data which will be selected from to create #' the year specific data. diff --git a/R/process_extract_cmh.R b/R/process_extract_cmh.R index 0b1ba0f19..a2adad75e 100644 --- a/R/process_extract_cmh.R +++ b/R/process_extract_cmh.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' CMH extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. @@ -44,9 +44,7 @@ process_extract_cmh <- function(data, # create blank diag 6 dplyr::mutate(diag6 = NA) - # Outfile -------------------------------------------- - - outfile <- cmh_clean %>% + cmh_processed <- cmh_clean %>% dplyr::select( "year", "recid", @@ -73,10 +71,11 @@ process_extract_cmh <- function(data, ) if (write_to_disk) { - # Save as rds file - outfile %>% - write_file(get_source_extract_path(year, "CMH", check_mode = "write")) + write_file( + cmh_processed, + get_source_extract_path(year, "CMH", check_mode = "write") + ) } - return(outfile) + return(cmh_processed) } diff --git a/R/process_extract_consultations.R b/R/process_extract_consultations.R index 7262c1df6..6dc175cb8 100644 --- a/R/process_extract_consultations.R +++ b/R/process_extract_consultations.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' GP OOH Consultations extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. diff --git a/R/process_extract_delayed_discharges.R b/R/process_extract_delayed_discharges.R index 29f37eb29..3c56807f9 100644 --- a/R/process_extract_delayed_discharges.R +++ b/R/process_extract_delayed_discharges.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' delayed discharges extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. diff --git a/R/process_extract_district_nursing.R b/R/process_extract_district_nursing.R index a1b3bf816..9d1df62a6 100644 --- a/R/process_extract_district_nursing.R +++ b/R/process_extract_district_nursing.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' District Nursing extract, it will return the final data -#' but also write this out an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. diff --git a/R/process_extract_gp_ooh.R b/R/process_extract_gp_ooh.R index 4add41cfa..2b536878a 100644 --- a/R/process_extract_gp_ooh.R +++ b/R/process_extract_gp_ooh.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' GP OoH extract, it will return the final data -#' but also write this out an rds. +#' and (optionally) write it to disk. #' #' @param year The year to process, in FY format. #' @param data_list A list containing the extracts. diff --git a/R/process_extract_home_care.R b/R/process_extract_home_care.R index 3fcf009eb..874ad899c 100644 --- a/R/process_extract_home_care.R +++ b/R/process_extract_home_care.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' (year specific) Home Care extract, it will return the final data -#' but also write this out as rds. +#' and (optionally) write it to disk. #' #' @inheritParams process_extract_care_home #' diff --git a/R/process_extract_homelessness.R b/R/process_extract_homelessness.R index a900cff9a..f4fb7d3e5 100644 --- a/R/process_extract_homelessness.R +++ b/R/process_extract_homelessness.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' homelessness extract, it will return the final data -#' and optionally write it out as rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process from [read_extract_homelessness()]. #' @param year The year to process, in FY format. diff --git a/R/process_extract_maternity.R b/R/process_extract_maternity.R index 04fa46ced..64fa4e205 100644 --- a/R/process_extract_maternity.R +++ b/R/process_extract_maternity.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' maternity extract, it will return the final data -#' but also write this out an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. @@ -63,10 +63,7 @@ process_extract_maternity <- function(data, year, write_to_disk = TRUE) { ) ) - - # Save outfile------------------------------------------------ - - outfile <- maternity_clean %>% + maternity_processed <- maternity_clean %>% dplyr::select( "year", "recid", @@ -113,12 +110,11 @@ process_extract_maternity <- function(data, year, write_to_disk = TRUE) { dplyr::arrange(.data$chi, .data$record_keydate1) if (write_to_disk) { - # Save as rds file - outfile %>% - write_file( - get_source_extract_path(year, "Maternity", check_mode = "write") - ) + write_file( + maternity_processed, + get_source_extract_path(year, "Maternity", check_mode = "write") + ) } - return(outfile) + return(maternity_processed) } diff --git a/R/process_extract_mental_health.R b/R/process_extract_mental_health.R index 76e7157e3..ffea63d28 100644 --- a/R/process_extract_mental_health.R +++ b/R/process_extract_mental_health.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' mental health extract, it will return the final data -#' but also write this out an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. @@ -67,10 +67,7 @@ process_extract_mental_health <- function(data, year, write_to_disk = TRUE) { smrtype = add_smr_type(.data$recid) ) - - # Outfile --------------------------------------- - - outfile <- mh_clean %>% + mh_processed <- mh_clean %>% dplyr::arrange(.data$chi, .data$record_keydate1) %>% dplyr::select( "year", @@ -118,10 +115,11 @@ process_extract_mental_health <- function(data, year, write_to_disk = TRUE) { ) if (write_to_disk) { - outfile %>% - # Save as rds file - write_file(get_source_extract_path(year, "MH", check_mode = "write")) + write_file( + mh_processed, + get_source_extract_path(year, "MH", check_mode = "write") + ) } - return(outfile) + return(mh_processed) } diff --git a/R/process_extract_ooh_diagnosis.R b/R/process_extract_ooh_diagnosis.R index 128c6c772..f2afd634e 100644 --- a/R/process_extract_ooh_diagnosis.R +++ b/R/process_extract_ooh_diagnosis.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' GP OOH Diagnosis extract, it will return the final data -#' but also write this out an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. diff --git a/R/process_extract_ooh_outcomes.R b/R/process_extract_ooh_outcomes.R index 6a14bced5..f188e6de1 100644 --- a/R/process_extract_ooh_outcomes.R +++ b/R/process_extract_ooh_outcomes.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' GP OOH Outcomes extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. diff --git a/R/process_extract_outpatients.R b/R/process_extract_outpatients.R index 39b421ab4..341ee0f1a 100644 --- a/R/process_extract_outpatients.R +++ b/R/process_extract_outpatients.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' outpatients extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. @@ -49,11 +49,7 @@ process_extract_outpatients <- function(data, year, write_to_disk = TRUE) { ) ) - - ## save outfile --------------------------------------- - - outfile <- - outpatients_clean %>% + outpatients_processed <- outpatients_clean %>% dplyr::select( "year", "recid", @@ -89,12 +85,11 @@ process_extract_outpatients <- function(data, year, write_to_disk = TRUE) { ) if (write_to_disk) { - # Save as rds file - outfile %>% - write_file( - get_source_extract_path(year, "Outpatients", check_mode = "write") - ) + write_file( + outpatients_processed, + get_source_extract_path(year, "Outpatients", check_mode = "write") + ) } - return(outfile) + return(outpatients_processed) } diff --git a/R/process_extract_prescribing.R b/R/process_extract_prescribing.R index 776299d47..68c388b83 100644 --- a/R/process_extract_prescribing.R +++ b/R/process_extract_prescribing.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' prescribing extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process, in FY format. @@ -50,9 +50,10 @@ process_extract_prescribing <- function(data, year, write_to_disk = TRUE) { } if (write_to_disk) { - # Save as rds file - pis_clean %>% - write_file(get_source_extract_path(year, "PIS", check_mode = "write")) + write_file( + pis_clean, + get_source_extract_path(year, "PIS", check_mode = "write") + ) } return(pis_clean) diff --git a/R/process_extract_sds.R b/R/process_extract_sds.R index a58651749..bd9e93a3f 100644 --- a/R/process_extract_sds.R +++ b/R/process_extract_sds.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' (year specific) SDS extract, it will return the final data -#' but also write this out as rds. +#' and (optionally) write it to disk. #' #' @inheritParams process_extract_care_home #' diff --git a/R/process_lookup_ltc.R b/R/process_lookup_ltc.R index 5a80deaff..8ea33da48 100644 --- a/R/process_lookup_ltc.R +++ b/R/process_lookup_ltc.R @@ -24,13 +24,11 @@ process_lookup_ltc <- function(data, year, write_to_disk = TRUE) { .fn = ~ stringr::str_remove(.x, "_date_flag") ) - # Save Outfile--------------------------------------------- - if (write_to_disk) { - # Save .rds file - ltc_flags %>% - dplyr::arrange(.data$chi) %>% - write_file(get_ltcs_path(year, check_mode = "write")) + write_file( + ltc_flags, + get_ltcs_path(year, check_mode = "write") + ) } return(ltc_flags) diff --git a/R/process_lookup_postcode.R b/R/process_lookup_postcode.R index 69cc13bd8..f9f1d47f4 100644 --- a/R/process_lookup_postcode.R +++ b/R/process_lookup_postcode.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' postcode lookup, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param simd_path Path to SIMD lookup. #' @param locality_path Path to locality lookup. @@ -58,16 +58,14 @@ process_lookup_postcode <- function(spd_path = get_spd_path(), # Join data together ----------------------------------------------------- - data <- - dplyr::left_join(spd_file, simd_file, by = "pc7") %>% + data <- dplyr::left_join(spd_file, simd_file, by = "pc7") %>% dplyr::rename(postcode = "pc7") %>% dplyr::left_join(locality_file, by = "datazone2011") # Finalise output ----------------------------------------------------- - outfile <- - data %>% + slf_pc_lookup <- data %>% dplyr::select( "postcode", "lca", @@ -89,13 +87,12 @@ process_lookup_postcode <- function(spd_path = get_spd_path(), tidyselect::matches("ur2_\\d{4}$") ) - - # Save out ---------------------------------------------------------------- if (write_to_disk) { - outfile %>% - # Save .rds file - write_file(get_slf_postcode_path(check_mode = "write")) + write_file( + slf_pc_lookup, + get_slf_postcode_path(check_mode = "write") + ) } - return(outfile) + return(slf_pc_lookup) } diff --git a/R/process_lookup_sc_client.R b/R/process_lookup_sc_client.R index 1874c2b5a..87e6b107d 100644 --- a/R/process_lookup_sc_client.R +++ b/R/process_lookup_sc_client.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' social care client lookup, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param year The year to process @@ -108,10 +108,7 @@ process_lookup_sc_client <- function(data, year, write_to_disk = TRUE) { .fn = ~ paste0("sc_", .x) ) - - ## save outfile --------------------------------------- - outfile <- - client_clean %>% + sc_client_lookup <- client_clean %>% # reorder dplyr::select( "sending_location", @@ -125,10 +122,11 @@ process_lookup_sc_client <- function(data, year, write_to_disk = TRUE) { ) if (write_to_disk) { - # Save .rds file - outfile %>% - write_file(get_source_extract_path(year, "Client", check_mode = "write")) + write_file( + sc_client_lookup, + get_source_extract_path(year, "Client", check_mode = "write") + ) } - return(outfile) + return(sc_client_lookup) } diff --git a/R/process_lookup_sc_demographics.R b/R/process_lookup_sc_demographics.R index 4b0f7500f..8c363f547 100644 --- a/R/process_lookup_sc_demographics.R +++ b/R/process_lookup_sc_demographics.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' social care demographic lookup, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process. #' @param spd_path Path to the Scottish Postcode Directory. @@ -12,7 +12,10 @@ #' @return the final data as a [tibble][tibble::tibble-package]. #' @export #' @family process extracts -process_lookup_sc_demographics <- function(data, spd_path = get_spd_path(), write_to_disk = TRUE) { +process_lookup_sc_demographics <- function( + data, + spd_path = get_spd_path(), + write_to_disk = TRUE) { # Deal with postcodes --------------------------------------- # UK postcode regex - see https://ideal-postcodes.co.uk/guides/postcode-validation @@ -51,8 +54,7 @@ process_lookup_sc_demographics <- function(data, spd_path = get_spd_path(), writ )) # count number of na postcodes - na_postcodes <- - sc_demog %>% + na_postcodes <- sc_demog %>% dplyr::count(dplyr::across(tidyselect::contains("postcode"), ~ is.na(.x))) sc_demog <- sc_demog %>% @@ -97,17 +99,11 @@ process_lookup_sc_demographics <- function(data, spd_path = get_spd_path(), writ dplyr::count(.data$postcode_type) # count number of replaced postcode - compare with count above - na_replaced_postcodes <- - sc_demog %>% + na_replaced_postcodes <- sc_demog %>% dplyr::count(dplyr::across(tidyselect::ends_with("_postcode"), ~ is.na(.x))) - na_replaced_postcodes - na_postcodes - - ## save outfile --------------------------------------- - outfile <- - sc_demog %>% + sc_demog_lookup <- sc_demog %>% # group by sending location and ID dplyr::group_by(.data$sending_location, .data$social_care_id) %>% # arrange so latest submissions are last @@ -126,14 +122,12 @@ process_lookup_sc_demographics <- function(data, spd_path = get_spd_path(), writ ) %>% dplyr::ungroup() - - ## save file ## - if (write_to_disk) { - # Save .rds file - outfile %>% - write_file(get_sc_demog_lookup_path(check_mode = "write")) + write_file( + sc_demog_lookup, + get_sc_demog_lookup_path(check_mode = "write") + ) } - return(outfile) + return(sc_demog_lookup) } diff --git a/R/process_sc_all_alarms_telecare.R b/R/process_sc_all_alarms_telecare.R index 61bce41b6..620b14cee 100644 --- a/R/process_sc_all_alarms_telecare.R +++ b/R/process_sc_all_alarms_telecare.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' all Alarms Telecare extract, it will return the final data -#' but also write this out as a rds. +#' and (optionally) write it to disk. #' #' @inheritParams process_sc_all_care_home #' @@ -121,9 +121,10 @@ process_sc_all_alarms_telecare <- function( tibble::as_tibble() if (write_to_disk) { - # Save .rds file ---- - qtr_merge %>% - write_file(get_sc_at_episodes_path(check_mode = "write")) + write_file( + qtr_merge, + get_sc_at_episodes_path(check_mode = "write") + ) } return(qtr_merge) diff --git a/R/process_sc_all_care_home.R b/R/process_sc_all_care_home.R index a11f275e8..c41e1a1d5 100644 --- a/R/process_sc_all_care_home.R +++ b/R/process_sc_all_care_home.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' all Care Home extract, it will return the final data -#' but also write this out as a rds. +#' and (optionally) write it to disk. #' #' @param data The extract to process #' @param sc_demog_lookup The Social Care Demographics lookup produced by diff --git a/R/process_sc_all_home_care.R b/R/process_sc_all_home_care.R index b812d492b..5f2b4db49 100644 --- a/R/process_sc_all_home_care.R +++ b/R/process_sc_all_home_care.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' all home care extract, it will return the final data -#' but also write this out as a rds. +#' and (optionally) write it to disk. #' #' @inheritParams process_sc_all_care_home #' diff --git a/R/process_sc_all_sds.R b/R/process_sc_all_sds.R index 068215a28..c17f74f28 100644 --- a/R/process_sc_all_sds.R +++ b/R/process_sc_all_sds.R @@ -1,7 +1,7 @@ #' Process the all SDS extract #' @description This will read and process the #' all SDS extract, it will return the final data -#' but also write this out as a rds. +#' and (optionally) write it to disk. #' #' @inheritParams process_sc_all_care_home #' @@ -119,12 +119,11 @@ process_sc_all_sds <- function( # change the data format from data.table to data.frame tibble::as_tibble() - - # Save outfile------------------------------------------------ if (write_to_disk) { - # Save .rds file - final_data %>% - write_file(get_sc_sds_episodes_path(check_mode = "write")) + write_file( + final_data, + get_sc_sds_episodes_path(check_mode = "write") + ) } return(final_data) diff --git a/R/read_extract_gp_ooh.R b/R/read_extract_gp_ooh.R index 98606eb8a..3a711c2f8 100644 --- a/R/read_extract_gp_ooh.R +++ b/R/read_extract_gp_ooh.R @@ -2,7 +2,7 @@ #' #' @description This will read and process the #' GP OoH extract, it will return the final data -#' but also write this out as an rds. +#' and (optionally) write it to disk. #' #' @param year The year to process, in FY format. #' @param diagnosis_path Path to diagnosis BOXI extract location. diff --git a/man/process_costs_ch_rmd.Rd b/man/process_costs_ch_rmd.Rd index 520898c9e..b990564b7 100644 --- a/man/process_costs_ch_rmd.Rd +++ b/man/process_costs_ch_rmd.Rd @@ -15,5 +15,5 @@ a \link[tibble:tibble-package]{tibble} containing the final cost data. \description{ This will read and process the care homes cost lookup, it will return the final data -but also write this out as a rds. +and write it to disk. } diff --git a/man/process_costs_dn_rmd.Rd b/man/process_costs_dn_rmd.Rd index bde475d5a..46bcd93dd 100644 --- a/man/process_costs_dn_rmd.Rd +++ b/man/process_costs_dn_rmd.Rd @@ -15,5 +15,5 @@ a \link[tibble:tibble-package]{tibble} containing the final cost data. \description{ This will read and process the District Nursing cost lookup, it will return the final data -but also write this out as a rds. +and write it to disk. } diff --git a/man/process_costs_gp_ooh_rmd.Rd b/man/process_costs_gp_ooh_rmd.Rd index fd71066c0..f5c611f11 100644 --- a/man/process_costs_gp_ooh_rmd.Rd +++ b/man/process_costs_gp_ooh_rmd.Rd @@ -15,5 +15,5 @@ a \link[tibble:tibble-package]{tibble} containing the final cost data. \description{ This will read and process the GP ooh cost lookup, it will return the final data -but also write this out as a rds. +and write it to disk. } diff --git a/man/process_costs_hc_rmd.Rd b/man/process_costs_hc_rmd.Rd index b15c311da..c3448bcbc 100644 --- a/man/process_costs_hc_rmd.Rd +++ b/man/process_costs_hc_rmd.Rd @@ -15,5 +15,5 @@ a \link[tibble:tibble-package]{tibble} containing the final cost data. \description{ This will read and process the Home Care cost lookup, it will return the final data -but also write this out as a rds. +and write it to disk. } diff --git a/man/process_extract_acute.Rd b/man/process_extract_acute.Rd index af6b85bfe..88264cf3d 100644 --- a/man/process_extract_acute.Rd +++ b/man/process_extract_acute.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the acute extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_ae.Rd b/man/process_extract_ae.Rd index 58878e689..b2f6954b7 100644 --- a/man/process_extract_ae.Rd +++ b/man/process_extract_ae.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the A&E extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_alarms_telecare.Rd b/man/process_extract_alarms_telecare.Rd index a6e61365d..5e37847b3 100644 --- a/man/process_extract_alarms_telecare.Rd +++ b/man/process_extract_alarms_telecare.Rd @@ -29,7 +29,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the (year specific) Alarms Telecare extract, it will return the final data -but also write this out as rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_care_home.Rd b/man/process_extract_care_home.Rd index f058ca787..03c1cd705 100644 --- a/man/process_extract_care_home.Rd +++ b/man/process_extract_care_home.Rd @@ -32,7 +32,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the (year specific) Care Home extract, it will return the final data -but also write this out as rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_cmh.Rd b/man/process_extract_cmh.Rd index 147651f37..52086848a 100644 --- a/man/process_extract_cmh.Rd +++ b/man/process_extract_cmh.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the CMH extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_delayed_discharges.Rd b/man/process_extract_delayed_discharges.Rd index ddc41ec46..f9a6b7439 100644 --- a/man/process_extract_delayed_discharges.Rd +++ b/man/process_extract_delayed_discharges.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the delayed discharges extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_district_nursing.Rd b/man/process_extract_district_nursing.Rd index 4d9383c2e..f2f466440 100644 --- a/man/process_extract_district_nursing.Rd +++ b/man/process_extract_district_nursing.Rd @@ -27,7 +27,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the District Nursing extract, it will return the final data -but also write this out an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_gp_ooh.Rd b/man/process_extract_gp_ooh.Rd index 8217f0d6f..f96e1dcf2 100644 --- a/man/process_extract_gp_ooh.Rd +++ b/man/process_extract_gp_ooh.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the GP OoH extract, it will return the final data -but also write this out an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_home_care.Rd b/man/process_extract_home_care.Rd index 4fef5ac14..8dc1ec6a7 100644 --- a/man/process_extract_home_care.Rd +++ b/man/process_extract_home_care.Rd @@ -24,7 +24,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the (year specific) Home Care extract, it will return the final data -but also write this out as rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_homelessness.Rd b/man/process_extract_homelessness.Rd index 7531f8f22..9b6eb9463 100644 --- a/man/process_extract_homelessness.Rd +++ b/man/process_extract_homelessness.Rd @@ -31,7 +31,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the homelessness extract, it will return the final data -and optionally write it out as rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_maternity.Rd b/man/process_extract_maternity.Rd index cd01e6931..8ff8d7014 100644 --- a/man/process_extract_maternity.Rd +++ b/man/process_extract_maternity.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the maternity extract, it will return the final data -but also write this out an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_mental_health.Rd b/man/process_extract_mental_health.Rd index 7159aae8b..4a7519d2d 100644 --- a/man/process_extract_mental_health.Rd +++ b/man/process_extract_mental_health.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the mental health extract, it will return the final data -but also write this out an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_ooh_consultations.Rd b/man/process_extract_ooh_consultations.Rd index d682197ca..029d951cb 100644 --- a/man/process_extract_ooh_consultations.Rd +++ b/man/process_extract_ooh_consultations.Rd @@ -17,7 +17,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the GP OOH Consultations extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_ooh_diagnosis.Rd b/man/process_extract_ooh_diagnosis.Rd index 2a962989a..864d4029f 100644 --- a/man/process_extract_ooh_diagnosis.Rd +++ b/man/process_extract_ooh_diagnosis.Rd @@ -17,7 +17,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the GP OOH Diagnosis extract, it will return the final data -but also write this out an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_ooh_outcomes.Rd b/man/process_extract_ooh_outcomes.Rd index 5b220e04a..186525ca3 100644 --- a/man/process_extract_ooh_outcomes.Rd +++ b/man/process_extract_ooh_outcomes.Rd @@ -17,7 +17,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the GP OOH Outcomes extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_outpatients.Rd b/man/process_extract_outpatients.Rd index c5e10abc8..721809c1e 100644 --- a/man/process_extract_outpatients.Rd +++ b/man/process_extract_outpatients.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the outpatients extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_prescribing.Rd b/man/process_extract_prescribing.Rd index cf294d95c..55b9eb242 100644 --- a/man/process_extract_prescribing.Rd +++ b/man/process_extract_prescribing.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the prescribing extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_extract_sds.Rd b/man/process_extract_sds.Rd index 7e8e44a38..14fe9cd0b 100644 --- a/man/process_extract_sds.Rd +++ b/man/process_extract_sds.Rd @@ -24,7 +24,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the (year specific) SDS extract, it will return the final data -but also write this out as rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_lookup_postcode.Rd b/man/process_lookup_postcode.Rd index 6ad56e5b3..19520b4e8 100644 --- a/man/process_lookup_postcode.Rd +++ b/man/process_lookup_postcode.Rd @@ -27,7 +27,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the postcode lookup, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_lookup_sc_client.Rd b/man/process_lookup_sc_client.Rd index e48426419..5daa569b3 100644 --- a/man/process_lookup_sc_client.Rd +++ b/man/process_lookup_sc_client.Rd @@ -20,7 +20,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the social care client lookup, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_lookup_sc_demographics.Rd b/man/process_lookup_sc_demographics.Rd index 6c00b4352..60478ab18 100644 --- a/man/process_lookup_sc_demographics.Rd +++ b/man/process_lookup_sc_demographics.Rd @@ -24,7 +24,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the social care demographic lookup, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_sc_all_alarms_telecare.Rd b/man/process_sc_all_alarms_telecare.Rd index 7e21407f9..8bbc1dce0 100644 --- a/man/process_sc_all_alarms_telecare.Rd +++ b/man/process_sc_all_alarms_telecare.Rd @@ -21,7 +21,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the all Alarms Telecare extract, it will return the final data -but also write this out as a rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_sc_all_care_home.Rd b/man/process_sc_all_care_home.Rd index 691fe51db..2c5d2c4ce 100644 --- a/man/process_sc_all_care_home.Rd +++ b/man/process_sc_all_care_home.Rd @@ -36,7 +36,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the all Care Home extract, it will return the final data -but also write this out as a rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_sc_all_home_care.Rd b/man/process_sc_all_home_care.Rd index d498514db..9a0b999af 100644 --- a/man/process_sc_all_home_care.Rd +++ b/man/process_sc_all_home_care.Rd @@ -21,7 +21,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the all home care extract, it will return the final data -but also write this out as a rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/process_sc_all_sds.Rd b/man/process_sc_all_sds.Rd index f2d6d8a1c..cca9d0fe5 100644 --- a/man/process_sc_all_sds.Rd +++ b/man/process_sc_all_sds.Rd @@ -21,7 +21,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the all SDS extract, it will return the final data -but also write this out as a rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: diff --git a/man/read_extract_gp_ooh.Rd b/man/read_extract_gp_ooh.Rd index eae6c52dc..73e6672d9 100644 --- a/man/read_extract_gp_ooh.Rd +++ b/man/read_extract_gp_ooh.Rd @@ -26,7 +26,7 @@ the final data as a \link[tibble:tibble-package]{tibble}. \description{ This will read and process the GP OoH extract, it will return the final data -but also write this out as an rds. +and (optionally) write it to disk. } \seealso{ Other process extracts: