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NAMESPACE
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NAMESPACE
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# Generated by roxygen2: do not edit by hand
export(add_features_metadata)
export(add_metabo)
export(add_omics_set)
export(add_pheno)
export(add_samples_metadata)
export(check_feature_sets)
export(check_input_multidataset)
export(check_is_multidataset)
export(check_missing_values)
export(comparison_heatmap_corr)
export(comparison_plot_correlation)
export(compute_consensus_importance)
export(compute_samples_silhouette)
export(consensus_importance_metric)
export(create_moiraine_pipeline)
export(create_multiomics_set)
export(create_omics_set)
export(create_omics_set_factory)
export(diablo_generate_design_matrix)
export(diablo_get_optim_ncomp)
export(diablo_get_pairwise_pls_corr)
export(diablo_get_params)
export(diablo_get_wa_coord)
export(diablo_pairwise_pls_factory)
export(diablo_plot)
export(diablo_plot_circos)
export(diablo_plot_perf)
export(diablo_plot_tune)
export(diablo_plot_var)
export(diablo_predefined_design_matrix)
export(diablo_run)
export(diablo_table_optim_keepX)
export(diablo_tune)
export(evaluate_feature_selection_table)
export(evaluate_method_enrichment)
export(feature_preselection_cov_factory)
export(feature_preselection_mad_factory)
export(feature_preselection_splsda_factory)
export(get_complete_data)
export(get_dataset_matrix)
export(get_datasets)
export(get_features)
export(get_features_labels)
export(get_features_metadata)
export(get_features_weight_correlation)
export(get_filtered_dataset_splsda)
export(get_filtered_dataset_variability)
export(get_input_mefisto)
export(get_input_mixomics_supervised)
export(get_input_mixomics_unsupervised)
export(get_input_mofa)
export(get_input_mofa2)
export(get_input_omicspls)
export(get_input_spls)
export(get_input_splsda)
export(get_latent_dimensions)
export(get_output)
export(get_output_diablo)
export(get_output_mofa2)
export(get_output_pca)
export(get_output_so2pls)
export(get_output_spls)
export(get_output_splsda)
export(get_pca_arguments)
export(get_samples)
export(get_samples_metadata)
export(get_samples_metadata_combined)
export(get_samples_score_correlation)
export(get_selected_features)
export(get_table_transformations)
export(get_top_features)
export(get_transformed_data)
export(ggpairs_custom)
export(hclust_matrix_rows)
export(import_dataset_csv)
export(import_dataset_csv_factory)
export(import_fmetadata_csv)
export(import_fmetadata_csv_factory)
export(import_fmetadata_gff)
export(import_fmetadata_gff_factory)
export(import_smetadata_csv)
export(import_smetadata_csv_factory)
export(is_equal_or_null)
export(join_features_metadata)
export(join_samples_metadata)
export(make_feature_sets_from_df)
export(make_feature_sets_from_fm)
export(mofa_get_weights)
export(mofa_plot_cor_covariates)
export(n_features)
export(n_samples)
export(options_list_as_tibble)
export(pca_complete_data_factory)
export(perf_splsda)
export(plot_correlation_matrix)
export(plot_correlation_matrix_full)
export(plot_data_covariate)
export(plot_data_heatmap)
export(plot_density_data)
export(plot_feature_preselection_cov)
export(plot_feature_preselection_mad)
export(plot_feature_preselection_splsda)
export(plot_features_weight_covariate)
export(plot_features_weight_distr)
export(plot_features_weight_pair)
export(plot_features_weight_set)
export(plot_meansd_data)
export(plot_samples_coordinates_pca)
export(plot_samples_score)
export(plot_samples_score_covariate)
export(plot_samples_score_pair)
export(plot_samples_upset)
export(plot_screeplot_pca)
export(plot_top_features)
export(plot_variance_explained)
export(plot_x_continuous)
export(plot_x_discrete)
export(plot_x_wrapper)
export(reduce_feature_sets_data)
export(replace_dataset)
export(round_dataset)
export(run_pairwise_pls)
export(run_pca)
export(run_pca_matrix)
export(run_splsda)
export(select_features_cov)
export(select_features_cov_matrix)
export(select_features_mad)
export(select_features_mad_matrix)
export(show_consensus_metrics)
export(so2pls_compare_samples_joint_components)
export(so2pls_crossval_o2m)
export(so2pls_crossval_o2m_adjR2)
export(so2pls_crossval_sparsity)
export(so2pls_get_components)
export(so2pls_get_optim_keep)
export(so2pls_get_optim_ncomp)
export(so2pls_get_optim_ncomp_adj)
export(so2pls_get_variance_explained)
export(so2pls_get_wa_coord)
export(so2pls_o2m)
export(so2pls_plot_cv)
export(so2pls_plot_cv_adj)
export(so2pls_plot_cv_sparsity)
export(so2pls_plot_joint_components_coefficients)
export(so2pls_plot_samples_joint_components)
export(so2pls_plot_samples_specific_components)
export(so2pls_plot_summary)
export(so2pls_print_cv_adj)
export(so2pls_print_cv_sparsity)
export(so2pls_screeplot)
export(spls_get_optim_ncomp)
export(spls_get_params)
export(spls_get_wa_coord)
export(spls_plot_tune)
export(spls_plot_var)
export(spls_run)
export(spls_tune)
export(subset_features)
export(transform_bestNormalise_auto)
export(transform_bestNormalise_manual)
export(transform_dataset)
export(transform_logx)
export(transform_vsn)
export(transform_vst)
export(transformation_datasets_factory)
export(zero_to_half_min)
exportClasses(MetabolomeSet)
exportClasses(PhenotypeSet)
exportMethods(add_metabo)
exportMethods(add_pheno)
import(methods)
importClassesFrom(Biobase,ExpressionSet)
importClassesFrom(Biobase,SnpSet)
importClassesFrom(Biobase,eSet)
importClassesFrom(MultiDataSet,MultiDataSet)
importFrom(dplyr,sym)
importFrom(ggplot2,aes)