DESCRIPTION

Package: moiraine
Title: Construction of Reproducible Pipelines for Testing and Comparing Multi-omics Integration Tools
Version: 1.0.0.9000
Authors@R: 
    c(person("Olivia", "Angelin-Bonnet", 
    email = "O.Angelin-Bonnet@massey.ac.nz",
    role = c("aut", "cre"), 
    comment = c(ORCID = "0000-0002-7708-2919")))
Description: A package to facilitate the construction of reproducible pipelines to evaluate 
  and compare multi-omics integration tools. Handles import of multi-omics datasets
  and associated metadata, datasets preparation (transformation, pre-filtering, etc),
   construction of input objects for several multi-omics integration packages
  (such as mixOmics or MOFA), as well as visualisation of the results and comparison
  of different integration tools.
URL: https://github.com/Plant-Food-Research-Open/moiraine, https://plant-food-research-open.github.io/moiraine/
BugReports: https://github.com/Plant-Food-Research-Open/moiraine/issues
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.1
Imports: 
    Biobase,
    circlize,
    ComplexHeatmap,
    dplyr,
    GGally,
    ggforce,
    ggnewscale,
    ggplot2,
    ggpubr,
    ggrepel,
    grid,
    methods,
    mixOmics,
    MOFA2,
    MultiDataSet,
    OmicsPLS,
    patchwork,
    pcaMethods,
    purrr,
    RColorBrewer,
    readr,
    rlang,
    scales,
    stats,
    stringi,
    stringr,
    tarchetypes,
    targets,
    textclean,
    tibble,
    tidyr,
    tidyselect,
    utils
Suggests: 
    bestNormalize,
    BiocParallel,
    cluster,
    corrplot,
    DESeq2,
    DT,
    gage,
    GenomicFeatures,
    ggbeeswarm,
    grDevices,
    hexbin,
    htmltools,
    kableExtra,
    knitr,
    plotly,
    rmarkdown,
    rtracklayer,
    testthat (>= 3.0.0),
    UpSetR,
    vsn
Config/testthat/edition: 3
Depends: 
    R (>= 2.10)
VignetteBuilder: knitr