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pfr_assemblyqc: please use the latest Nextflow version on pP #180

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CeciliaDeng opened this issue Nov 19, 2024 · 1 comment
Open

pfr_assemblyqc: please use the latest Nextflow version on pP #180

CeciliaDeng opened this issue Nov 19, 2024 · 1 comment
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awaiting-feedback Waiting for input from user bug Something isn't working

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@CeciliaDeng
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Description of the bug

For pfr users:

The nextflow version needs to be updated in the pfr_assemblyqc, Otherwise, the following error may happen:

Failed requirement - Plugin [email protected] requires Nextflow version >=23.10.0 (current 23.04.4)

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@CeciliaDeng CeciliaDeng added the bug Something isn't working label Nov 19, 2024
@GallVp
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GallVp commented Nov 19, 2024

Can you please share your launch command? Which pipeline version are you using? The latest version of the pipeline (https://github.com/Plant-Food-Research-Open/assemblyqc/releases/tag/2.2.0) uses Nextflow 24.04.3 as can be seen in the pfr_assemblyqc file,

ml nextflow/24.04.3

Is it possible that you have tried to use the old launch script with the new version of the pipeline?

@GallVp GallVp added the awaiting-feedback Waiting for input from user label Nov 19, 2024
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