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Add gfastats #126

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GallVp opened this issue Sep 16, 2024 · 2 comments · Fixed by #145
Closed

Add gfastats #126

GallVp opened this issue Sep 16, 2024 · 2 comments · Fixed by #145
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@GallVp
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enhancement New feature or request
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2.2.0

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@GallVp
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GallVp commented Sep 16, 2024

Description of feature
@GallVp GallVp added the enhancement New feature or request label Sep 16, 2024
@GallVp GallVp added this to the 2.2 milestone Sep 16, 2024
@GallVp GallVp self-assigned this Sep 16, 2024
@GallVp
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GallVp commented Sep 16, 2024

Some of the gap statistics are missing from ASSEMBLATHON STATS such as,

gaps in scaffolds: 0

Total gap length in scaffolds: 0
Average gap length in scaffolds: 0.00
Gap N50 in scaffolds: 0
Gap auN in scaffolds: 0.00
Gap L50 in scaffolds: 0
Largest gap in scaffolds: 0
Smallest gap in scaffolds: 0

@christinawu2008
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This is required for red assemblies, AWS testing...

@GallVp GallVp linked a pull request Oct 25, 2024 that will close this issue
Added gfastats #145
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@GallVp GallVp closed this as completed Nov 5, 2024
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enhancement New feature or request
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2.2.0
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Added gfastats Plant-Food-Research-Open/assemblyqc
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@GallVp @christinawu2008