diff --git a/docs/usage.md b/docs/usage.md index 3090d3c5..8590c615 100644 --- a/docs/usage.md +++ b/docs/usage.md @@ -129,7 +129,7 @@ The data for these examples comes from: [umd.edu](https://obj.umiacs.umd.edu/mar All the modules have been tested to work on a single machine with 10 CPUs + 32 GBs of memory, except NCBI FCS GX and Kraken2. Their minimum requirements are: - NCBI FCS GX: 1 CPU + 512 GBs memory -- Kraken2: 1 CPU + 250 GBs memory +- Kraken2: 1 CPU + 256 GBs memory ## Running the pipeline diff --git a/tests/README.md b/tests/README.md index 6f09f846..a9af91a8 100644 --- a/tests/README.md +++ b/tests/README.md @@ -20,7 +20,7 @@ The GitHub [CI action](../.github/workflows/ci.yml) included with the pipeline c ## Testing with a Large Dataset at Plant&Food -Before each release, the functionality of the entire pipeline is tested with a large dataset on the on-prem SLURM-based HPC at The New Zealand Institute of Plant and Food Research. +Before each release, the functionality of the entire pipeline is tested with a large dataset on the on-prem SLURM-based HPC at The New Zealand Institute for Plant and Food Research. ## Testing Merqury Datasets diff --git a/tests/hicparam/main.nf.test.snap b/tests/hicparam/main.nf.test.snap index feebbdbc..db89beee 100644 --- a/tests/hicparam/main.nf.test.snap +++ b/tests/hicparam/main.nf.test.snap @@ -68,7 +68,7 @@ "pigz": "2.3.4" }, "Workflow": { - "plant-food-research-open/assemblyqc": "v2.2.0dev" + "plant-food-research-open/assemblyqc": "v2.2.0" } }, "stable paths": [ diff --git a/tests/invalid/main.nf.test.snap b/tests/invalid/main.nf.test.snap index 9aa72f46..c29b15ad 100644 --- a/tests/invalid/main.nf.test.snap +++ b/tests/invalid/main.nf.test.snap @@ -35,7 +35,7 @@ "pigz": "2.3.4" }, "Workflow": { - "plant-food-research-open/assemblyqc": "v2.2.0dev" + "plant-food-research-open/assemblyqc": "v2.2.0" } }, "stable paths": [ diff --git a/tests/minimal/main.nf.test.snap b/tests/minimal/main.nf.test.snap index 44a5d9fc..8e139a7e 100644 --- a/tests/minimal/main.nf.test.snap +++ b/tests/minimal/main.nf.test.snap @@ -35,7 +35,7 @@ "pigz": "2.3.4" }, "Workflow": { - "plant-food-research-open/assemblyqc": "v2.2.0dev" + "plant-food-research-open/assemblyqc": "v2.2.0" } }, "stable paths": [ diff --git a/tests/noltr/main.nf.test.snap b/tests/noltr/main.nf.test.snap index 75ee9f5f..d1580b9d 100644 --- a/tests/noltr/main.nf.test.snap +++ b/tests/noltr/main.nf.test.snap @@ -50,7 +50,7 @@ "seqkit": "v2.8.0" }, "Workflow": { - "plant-food-research-open/assemblyqc": "v2.2.0dev" + "plant-food-research-open/assemblyqc": "v2.2.0" } }, "stable paths": [ diff --git a/tests/orthofinder/main.nf.test.snap b/tests/orthofinder/main.nf.test.snap index 633b6c30..4d34b485 100644 --- a/tests/orthofinder/main.nf.test.snap +++ b/tests/orthofinder/main.nf.test.snap @@ -41,7 +41,7 @@ "pigz": "2.3.4" }, "Workflow": { - "plant-food-research-open/assemblyqc": "v2.2.0dev" + "plant-food-research-open/assemblyqc": "v2.2.0" } }, "stable paths": [ @@ -80,4 +80,4 @@ }, "timestamp": "2024-11-01T14:11:21.865104" } -} \ No newline at end of file +} diff --git a/tests/stub/main.nf.test.snap b/tests/stub/main.nf.test.snap index 74b3740e..d2e05d4c 100644 --- a/tests/stub/main.nf.test.snap +++ b/tests/stub/main.nf.test.snap @@ -230,7 +230,7 @@ "untar": 1.34 }, "Workflow": { - "plant-food-research-open/assemblyqc": "v2.2.0dev" + "plant-food-research-open/assemblyqc": "v2.2.0" } }, "stable paths": [ diff --git a/tests/tiny/main.nf.test.snap b/tests/tiny/main.nf.test.snap index 60dfdbbe..b937e1d4 100644 --- a/tests/tiny/main.nf.test.snap +++ b/tests/tiny/main.nf.test.snap @@ -29,7 +29,7 @@ "pigz": "2.3.4" }, "Workflow": { - "plant-food-research-open/assemblyqc": "v2.2.0dev" + "plant-food-research-open/assemblyqc": "v2.2.0" } }, "stable paths": [