From abd8f513523d5444c9f4dc5670c58ac6adc87539 Mon Sep 17 00:00:00 2001 From: Usman Rashid Date: Mon, 4 Nov 2024 13:58:34 +1300 Subject: [PATCH] Moved around test_full options --- conf/test_full.config | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/conf/test_full.config b/conf/test_full.config index 818e1c86..9ac77972 100644 --- a/conf/test_full.config +++ b/conf/test_full.config @@ -33,13 +33,13 @@ params { ncbi_fcs_gx_tax_id = 35717 // ncbi_fcs_gx_db_path = 'https://ftp.ncbi.nlm.nih.gov/genomes/TOOLS/FCS/database/r2023-01-24' + tidk_skip = false + tidk_repeat_seq = 'TTTGGG' + busco_skip = false busco_mode = 'genome' busco_lineage_datasets = 'fungi_odb10 hypocreales_odb10' - tidk_skip = false - tidk_repeat_seq = 'TTTGGG' - lai_skip = false kraken2_skip = true // Skipping this step as the dataset is humengous (126 GB). Please download the dataset manually @@ -47,10 +47,10 @@ params { hic = 'SRR8238190' + merqury_skip = false + synteny_skip = false synteny_mummer_skip = false synteny_plotsr_skip = false synteny_xref_assemblies = 'https://raw.githubusercontent.com/plant-food-research-open/assemblyqc/dev/assets/xrefsheet.csv' - - merqury_skip = false }