Skip to content

Actions: Plant-Food-Research-Open/assemblyqc

nf-core linting

Actions

Loading...
Loading

Show workflow options

Create status badge

Loading
218 workflow runs
218 workflow runs

Filter by Event

Filter by Status

Filter by Branch

Filter by Actor

Now detecting duplicate sequences with SEQKIT/RMDUP
nf-core linting #68: Commit f1d5642 pushed by GallVp
May 27, 2024 08:48 1m 3s dev
dev
May 27, 2024 08:48 1m 3s
Added JAD labels to tests/stub
nf-core linting #67: Commit cab93a3 pushed by GallVp
May 27, 2024 06:09 1m 13s dev
dev
May 27, 2024 06:09 1m 13s
Fixed a typo
nf-core linting #66: Commit 57518fc pushed by GallVp
May 27, 2024 05:41 1m 0s dev
dev
May 27, 2024 05:41 1m 0s
Fixed merqury/merqury import path
nf-core linting #65: Commit 38cdee7 pushed by GallVp
May 27, 2024 05:36 59s dev
dev
May 27, 2024 05:36 59s
Upgraded locally merqury
nf-core linting #64: Commit 5d3fe26 pushed by GallVp
May 27, 2024 05:31 58s dev
dev
May 27, 2024 05:31 58s
Added plotsr
nf-core linting #63: Commit c955ad4 pushed by GallVp
May 27, 2024 05:28 1m 4s dev
dev
May 27, 2024 05:28 1m 4s
Updated docs and removed meryl patches
nf-core linting #62: Commit 5ff4458 pushed by GallVp
May 22, 2024 10:13 1m 12s dev
dev
May 22, 2024 10:13 1m 12s
Added stub to merqury
nf-core linting #61: Commit eb3cf6f pushed by GallVp
May 22, 2024 04:45 1m 2s dev
dev
May 22, 2024 04:45 1m 2s
Locally patched MERQURY, MERYL/COUNT and MERYL/UNIONSUM
nf-core linting #60: Commit dd743dd pushed by GallVp
May 22, 2024 04:08 1m 11s dev
dev
May 22, 2024 04:08 1m 11s
Nowing using a single FETCHNGS workflow to download sra
nf-core linting #59: Commit e4bbd31 pushed by GallVp
May 18, 2024 09:12 1m 9s dev
dev
May 18, 2024 09:12 1m 9s
Added module stubs to enable merquryfk in stub test
nf-core linting #58: Commit 56777e0 pushed by GallVp
May 18, 2024 08:36 1m 17s dev
dev
May 18, 2024 08:36 1m 17s
Added mixed2x test for MERQURY.FK
nf-core linting #57: Commit 1e57c36 pushed by GallVp
May 17, 2024 10:38 1m 17s dev
dev
May 17, 2024 10:38 1m 17s
Replaced local NCBI_FCS_ADAPTOR with nf-core module
nf-core linting #56: Commit 32efaaf pushed by GallVp
May 17, 2024 01:19 2m 0s dev
dev
May 17, 2024 01:19 2m 0s
Replaced local BUSCO module with FASTA_GXF_BUSCO_PLOT
nf-core linting #55: Commit 77e752a pushed by GallVp
May 16, 2024 23:46 58s dev
dev
May 16, 2024 23:46 58s
Replaced GFF3_VALIDATE sub-workflow with GFF3_GT_GFF3_GFF3VALIDATOR_STAT
nf-core linting #54: Commit 22ca108 pushed by GallVp
May 16, 2024 02:47 1m 13s dev
dev
May 16, 2024 02:47 1m 13s
Fixed linting issues
nf-core linting #53: Commit 62e5896 pushed by GallVp
May 16, 2024 02:25 1m 21s dev
dev
May 16, 2024 02:25 1m 21s
Updated nf-core/template to 2.14.1
nf-core linting #52: Commit 30af6d3 pushed by GallVp
May 16, 2024 02:14 1m 27s dev
dev
May 16, 2024 02:14 1m 27s
Now fasta ids are sorted in natural order for
nf-core linting #51: Commit 50a0b5f pushed by GallVp
May 6, 2024 04:31 1m 6s dev
dev
May 6, 2024 04:31 1m 6s
Updated fcs-adaptor to 0.5.0
nf-core linting #50: Commit eaa0cf9 pushed by GallVp
May 6, 2024 01:15 1m 26s dev
dev
May 6, 2024 01:15 1m 26s
Now pipeline can continue if contamination is detected
nf-core linting #49: Commit 7e9872e pushed by GallVp
May 6, 2024 00:18 1m 35s dev
dev
May 6, 2024 00:18 1m 35s
Updated CHANGELOG
nf-core linting #48: Commit e64b0a9 pushed by GallVp
May 2, 2024 00:55 1m 14s dev
dev
May 2, 2024 00:55 1m 14s
Updated fasta_ltrretriever_lai to fix [ meta, [] ] bug
nf-core linting #47: Commit 0cc8a8a pushed by GallVp
May 2, 2024 00:53 1m 34s dev
dev
May 2, 2024 00:53 1m 34s
Added the ability to create linear synteny plot in addition to the ci…
nf-core linting #46: Commit 5660e89 pushed by GallVp
May 2, 2024 00:50 1m 15s dev
dev
May 2, 2024 00:50 1m 15s
Added a custom BUNDLELINKS module which respects direction when bundl…
nf-core linting #45: Commit 4c5998b pushed by GallVp
May 1, 2024 02:39 1m 15s dev
dev
May 1, 2024 02:39 1m 15s
RUNASSEMBLYVISUALIZER is now single threaded for successful execution…
nf-core linting #44: Commit a537e1c pushed by GallVp
May 1, 2024 01:15 1m 4s dev
dev
May 1, 2024 01:15 1m 4s