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I draw the following molecule
HELM generated is correct PEPTIDE1{A.A.A.C.C.D.L.L.L.V.V.V.C.D.D}$$$$V2.0
I create a group and annotate it.
HELM generated looks fine. PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0
I clear the canvas contents
paste the generated HELM from above PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0 into the HELM box.
click apply
nothing happens
I move the bar to the resize the canvas and the following structure appears.
The fragments are correct and the annotations are retained, but they are not connected.
I click on the sequence tab and then back to the HELM tab and the HELM changes to PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$$$$V2.0 which reflects the canvas view i.e. is a set of 3 disconnected fragments.
The text was updated successfully, but these errors were encountered:
PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test Annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0
despite this being generated by the webeditor itself.
ClairePA
changed the title
Odd things happen with annotated groups
Annotating a group using the webeditor creates HELM the webeditor won't accept
Sep 25, 2018
Steps to reproduce:
I draw the following molecule
HELM generated is correct
PEPTIDE1{A.A.A.C.C.D.L.L.L.V.V.V.C.D.D}$$$$V2.0
I create a group and annotate it.
HELM generated looks fine.
PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0
PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$PEPTIDE1,PEPTIDE3,4:R2-1:R1|PEPTIDE3,PEPTIDE2,4:R2-1:R1$$$V2.0
into the HELM box.PEPTIDE1{A.A.A.C}|PEPTIDE2{L.V.V.V.C.D.D}|PEPTIDE3{C.D.L.L}"Test annotation"$$$$V2.0
which reflects the canvas view i.e. is a set of 3 disconnected fragments.The text was updated successfully, but these errors were encountered: