NAMESPACE

# Generated by roxygen2: do not edit by hand

export(Startrac.run)
export(calCloneLLR)
export(calIndex)
export(calTissueDist)
export(getSig)
export(loginfo)
export(pIndex)
export(plot)
export(plotTissueDist)
exportClasses(Startrac)
exportClasses(StartracOut)
import(data.table)
importFrom(ComplexHeatmap,Heatmap)
importFrom(RColorBrewer,brewer.pal)
importFrom(RhpcBLASctl,omp_set_num_threads)
importFrom(circlize,colorRamp2)
importFrom(data.table,as.data.table)
importFrom(data.table,dcast)
importFrom(data.table,melt)
importFrom(doParallel,registerDoParallel)
importFrom(ggplot2,aes)
importFrom(ggplot2,element_text)
importFrom(ggplot2,facet_wrap)
importFrom(ggplot2,geom_text)
importFrom(ggplot2,theme)
importFrom(ggpubr,ggbarplot)
importFrom(ggpubr,ggboxplot)
importFrom(grDevices,colorRampPalette)
importFrom(grid,gpar)
importFrom(methods,"slot<-")
importFrom(methods,new)
importFrom(methods,setClass)
importFrom(methods,setMethod)
importFrom(methods,setValidity)
importFrom(methods,slot)
importFrom(methods,validObject)
importFrom(parallel,detectCores)
importFrom(parallel,makeCluster)
importFrom(parallel,stopCluster)
importFrom(plyr,aaply)
importFrom(plyr,adply)
importFrom(plyr,laply)
importFrom(plyr,ldply)
importFrom(plyr,llply)
importFrom(sscVis,plotMatrix.simple)
importFrom(stats,chisq.test)
importFrom(utils,combn)
importFrom(utils,head)