notes/warnings fixes in data.atmosphere package #5381

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Run time

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Job	Run time
sipnet (4.2)	9m 4s
sipnet (4.1)	8m 36s
check (check_base, 4.2)	6m 13s
check (check_base, 4.1)	5m 54s
test (4.2)	6m 48s
check (check_modules, 4.2)	12m 27s
test (4.1)	6m 11s
check (check_modules, 4.1)	12m 9s
check (check_models, 4.2)	7m 15s
check (check_models, 4.1)	7m 8s
	1h 21m 45s