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Main changes to dev #21

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wants to merge 103 commits into from
Closed

Main changes to dev #21

wants to merge 103 commits into from

Commits on Mar 8, 2024

  1. move temp_index to it's own file

    @PaulMelloy
    PaulMelloy committed Mar 8, 2024
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  2. move moisture_index to own file

    @PaulMelloy
    PaulMelloy committed Mar 8, 2024
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  3. auxilary functions, keep in dev

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  4. remove spore_rate and inf_rate for racca methods

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  5. remove racca method functionality from 'main'

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  6. remove auxillary functions and tests

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  7. remove extra line breaks

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  8. remove auxiually docs

    @PaulMelloy
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  9. wrap calculation with list DT

    @PaulMelloy
    PaulMelloy committed Mar 8, 2024
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  10. move packages to suggests

    @PaulMelloy
    PaulMelloy committed Mar 8, 2024
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  11. remove aux functions

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  12. amend tests without racca outputs

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  13. remove racca ref from vig

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  14. doc

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  15. Update README.md

    @ReneHeim
    ReneHeim authored Mar 8, 2024
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  16. deploy pkgdown site

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Commits on Mar 10, 2024

  1. Update title and DESCRIPTION use Ropen template

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  2. Merge branch 'main' of https://github.com/PaulMelloy/cercospoRa

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Commits on Mar 11, 2024

  1. logo and negative pm

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  2. github doc

    @PaulMelloy
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  3. fix image

    @PaulMelloy
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  4. missed !

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  5. add raw address

    @PaulMelloy
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  6. change theme

    @PaulMelloy
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  7. use_github_pages

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  8. try installing epiphytoolR on actions

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  9. extra repositories

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  10. try again for extra_packages and remotes Des

    @PaulMelloy
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  11. missing comma

    @PaulMelloy
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  12. another

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  13. no quotes

    @PaulMelloy
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  14. add logo

    @PaulMelloy
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  15. remove duplicated heading

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  16. transparent hex background

    @PaulMelloy
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  17. add some linebreaks

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  18. add more line breaks and sp

    @PaulMelloy
    PaulMelloy committed Mar 11, 2024
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Commits on Mar 12, 2024

  1. use renes logo

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Commits on Mar 13, 2024

  1. Initial commit

    @nathanokole
    nathanokole committed Mar 13, 2024
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  2. initial commit

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  3. generalize from two to several images

    @nathanokole
    nathanokole committed Mar 13, 2024
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Commits on Mar 14, 2024

  1. initial commit

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  2. minor edits

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  3. minor edits

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  4. documentation edits

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  5. documentation edits

    @nathanokole
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  6. minor edits

    @nathanokole
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  7. minor edits

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  8. minor udjustments

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  9. minor edits

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  10. Edit on the example

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  11. added package sf to description

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  12. add package sf to description

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  13. Merge pull request #14 from nathanokole/main 

    Addition of functions to deal with spatial data
    @PaulMelloy
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  14. ensure different to internal data Tm1

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  15. store randomised testing data

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  16. Update raster functions to terra

    @PaulMelloy
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  17. use internal data for testing

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  18. init test

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  19. init test

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  20. remove extra )

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  21. Increment version number to 0.0.0.9002

    @PaulMelloy
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  22. remove imports

    @PaulMelloy
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  23. Solve error in calc_r_x0

    @nathanokole
    nathanokole committed Mar 14, 2024
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  24. replace t by tm

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  25. fix issues due to raster to terra change

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  26. solve NA due to terra::rast

    @nathanokole
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  27. Example updates

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Commits on Mar 15, 2024

  1. Add lower limit to minpack.lm::nlsLM

    @nathanokole
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Commits on May 10, 2024

  1. use threshold from wolf paper

    Paul Melloy committed May 10, 2024
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  2. provide moisture index options method

    Paul Melloy committed May 10, 2024
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Commits on Jul 21, 2024

  1. add tests and check outputs

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Commits on Jul 22, 2024

  1. rh_threshold not parsed

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  2. updated expected outputs

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  3. tests for both moisture threshold methods

    @PaulMelloy
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  4. Threshold updated effect on expected values

    @PaulMelloy
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  5. incremented Roxy

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  6. ignore Rprofile

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Commits on Jul 24, 2024

  1. add pattern to file detection

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  2. add parameter for respective img dates see #18

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  3. amend test in line with function changes #18

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  4. set the raster name as image date return raster

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  5. replace img with param_r

    @PaulMelloy
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  6. use names

    @PaulMelloy
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  7. lint

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  8. adjust t0 assignment return object

    @PaulMelloy
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  9. update tests in line with code changes

    @PaulMelloy
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  10. Remove loop and use terra::app #19

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  11. fix example

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Commits on Jul 26, 2024

  1. return with t0 as posix

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Commits on Jul 27, 2024

  1. allow a vector to be supplied to c_closure 

    For calc_epidemic_onset_from_image()
    @PaulMelloy
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  2. delete white space

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  3. sapply to loop for c_closure image processing

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  4. use terra::app for function

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  5. correct example with full names

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  6. redoc passing all tests

    @PaulMelloy
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  7. alter tests to allow for new changes

    @PaulMelloy
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  8. update return documentation #17

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Commits on Jul 30, 2024

  1. updated vignette to show calc epidemic from LAI

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  2. move DIV and nasa power example to new vignette

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  3. As per discussion in issue #22

    @PaulMelloy
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  4. update licence to be explicit with CC-BY-SA

    @PaulMelloy
    PaulMelloy committed Jul 30, 2024
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  5. correct citation format

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Commits on Jul 31, 2024

  1. remove redundant commented code

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