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Steps to install PathVisio on M1 Mac (ventura 13.4.1) (suggestions) #195

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hiromasaono opened this issue Jun 28, 2023 · 1 comment
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@hiromasaono
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Thank you for maintaining a nice tool!
I tried to install PathVisio on M1 Mac (arm-64, ventura 13.4.1) but could not handle the existing documentation (especially the Java 8 setup), so I share the steps that worked. (It would be great if you could add it to the documentation if possible.)

Installing PathVisio (M1 Mac, Ventura 13.4.1)

Installing Java 8

  • In case JDK is not installed:
    • Running java -version in the terminal will display an error message.
The operation couldn’t be completed. Unable to locate a Java Runtime.
Please visit http://www.java.com for information on installing Java.
  • Download and install Java 8 (LTS) provided by Azul.
  • Running java -version in the terminal should display the following:
openjdk version "1.8.0_372"
OpenJDK Runtime Environment (Zulu 8.70.0.23-CA-macos-aarch64) (build 1.8.0_372-b07)
OpenJDK 64-Bit Server VM (Zulu 8.70.0.23-CA-macos-aarch64) (build 25.372-b07, mixed mode)

Downloading PathVisio

Launching PathVisio

  • Run the pathvisio.sh file in the pathvisio-3.3.0 directory from the terminal.
$ cd /Applications/pathvisio-3.3.0
$ sh pathvisio.sh

Alternatively, double-click the pathvisio.jar file to launch PathVisio.

@mkutmon
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mkutmon commented Aug 22, 2023

Dear @hiromasaono! Thanks so much for reporting this. Did you try the .dmg file for MacOSX? It should have Java 8 packaged within the installer, so a separate installation of Java should not be required anymore. Or did you have issues with using the .dmg installer?

@hiromasaono
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Dear @mkutmon !
Thank you very much for your comments.
I first tried to install with the .dmg file for MacOSX, but had Java issues, so I tried the method I posted above and it worked fine.

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