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mlmed_ranking

Code for the paper "Matching Anticancer Compounds and Tumor Cell Lines by Neural Networks with Ranking Loss"

HowTo

  • To run all the experiments from the paper simply run 'run_experiments.sh'
    • This runs the PaccMann and NN baseline models on the data
  • To plot the results after running 'run_experiments.sh' look into the notebook 'plot_figures.ipynb'

Requirements

  • See requirements.txt