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Parsl Aligner

Parsl Aligner skeleton for initial handoff.

Requirements

  • Make sure you have Python3.5.

  • Install parsl package:

    pip3 install parsl
    

How to run:

  • Run the setup script to generate a mock fastq file

  • Start ipcluster with command:

    ipcluster start -n 2

  • Run the script:

    python3 par_align.py