[docs]
def interpolation_matrix_1d ( fine_grid , coarse_grid , k = 2 , periodic = False , pad = 1 , equidist_nested = True ):
"""
- Function to contruct the restriction matrix in 1d using barycentric interpolation
+ Function to construct the restriction matrix in 1d using barycentric interpolation
Args:
fine_grid (np.ndarray): a one dimensional 1d array containing the nodes of the fine grid
diff --git a/_modules/implementations/convergence_controller_classes/check_iteration_estimator.html b/_modules/implementations/convergence_controller_classes/check_iteration_estimator.html
index 42307dea6c..dd931a9bc5 100644
--- a/_modules/implementations/convergence_controller_classes/check_iteration_estimator.html
+++ b/_modules/implementations/convergence_controller_classes/check_iteration_estimator.html
@@ -47,7 +47,7 @@ Source code for implementations.convergence_controller_classes.check_iterati
class CheckIterationEstimatorNonMPI ( ConvergenceController ):
def __init__ ( self , controller , params , description , ** kwargs ):
"""
- Initalization routine
+ Initialization routine
Args:
controller (pySDC.Controller): The controller
diff --git a/_modules/implementations/datatype_classes/mesh.html b/_modules/implementations/datatype_classes/mesh.html
index 601fdb91a9..14519b4098 100644
--- a/_modules/implementations/datatype_classes/mesh.html
+++ b/_modules/implementations/datatype_classes/mesh.html
@@ -252,7 +252,7 @@ Source code for implementations.datatype_classes.mesh def
__getattr__ ( self , name ):
if name in self . components :
if self . shape [ 0 ] == len ( self . components ):
-
return self [ self . components . index ( name )]
+
return self [ self . components . index ( name )] . view ( mesh )
else :
raise AttributeError ( f 'Cannot access { name !r} in { type ( self ) !r} because the shape is unexpected.' )
else :
diff --git a/_modules/implementations/problem_classes/Brusselator.html b/_modules/implementations/problem_classes/Brusselator.html
index 4f950c9944..4f30c9af8e 100644
--- a/_modules/implementations/problem_classes/Brusselator.html
+++ b/_modules/implementations/problem_classes/Brusselator.html
@@ -71,6 +71,7 @@
Source code for implementations.problem_classes.Brusselator shape
= ( 2 ,) + ( self . init [ 0 ])
self . iU = 0
self . iV = 1
+
self . ncomp = 2 # needed for transfer class
self . init = ( shape , self . comm , np . dtype ( 'float' ))
def _eval_explicit_part ( self , u , t , f_expl ):
diff --git a/_modules/implementations/problem_classes/GrayScott_MPIFFT.html b/_modules/implementations/problem_classes/GrayScott_MPIFFT.html
index fa5249228a..c0fd08b451 100644
--- a/_modules/implementations/problem_classes/GrayScott_MPIFFT.html
+++ b/_modules/implementations/problem_classes/GrayScott_MPIFFT.html
@@ -120,6 +120,7 @@
Source code for implementations.problem_classes.GrayScott_MPIFFT shape
= ( 2 ,) + ( self . init [ 0 ])
self . iU = 0
self . iV = 1
+
self . ncomp = 2 # needed for transfer class
self . init = ( shape , self . comm , self . xp . dtype ( 'float' ))
self . _makeAttributeAndRegister ( 'Du' , 'Dv' , 'A' , 'B' , localVars = locals (), readOnly = True )
diff --git a/_modules/implementations/sweeper_classes/imex_1st_order.html b/_modules/implementations/sweeper_classes/imex_1st_order.html
index d81146f597..601f9be65f 100644
--- a/_modules/implementations/sweeper_classes/imex_1st_order.html
+++ b/_modules/implementations/sweeper_classes/imex_1st_order.html
@@ -85,16 +85,14 @@
Source code for implementations.sweeper_classes.imex_1st_order list of dtype_u: containing the integral as values
"""
- # get current level and problem description
L = self . level
+ P = L . prob
me = []
-
# integrate RHS over all collocation nodes
for m in range ( 1 , self . coll . num_nodes + 1 ):
- me . append ( L . dt * self . coll . Qmat [ m , 1 ] * ( L . f [ 1 ] . impl + L . f [ 1 ] . expl ))
- # new instance of dtype_u, initialize values with 0
- for j in range ( 2 , self . coll . num_nodes + 1 ):
+ me . append ( P . dtype_u ( P . init , val = 0.0 ))
+ for j in range ( 1 , self . coll . num_nodes + 1 ):
me [ m - 1 ] += L . dt * self . coll . Qmat [ m , j ] * ( L . f [ j ] . impl + L . f [ j ] . expl )
return me
diff --git a/_modules/implementations/transfer_classes/TransferMesh.html b/_modules/implementations/transfer_classes/TransferMesh.html
index dde4268327..9116383413 100644
--- a/_modules/implementations/transfer_classes/TransferMesh.html
+++ b/_modules/implementations/transfer_classes/TransferMesh.html
@@ -43,17 +43,16 @@
Source code for implementations.transfer_classes.TransferMesh import
pySDC.helpers.transfer_helper as th
from pySDC.core.Errors import TransferError
from pySDC.core.SpaceTransfer import space_transfer
-
from pySDC.implementations.datatype_classes.mesh import mesh , imex_mesh , comp2_mesh
[docs]
class mesh_to_mesh ( space_transfer ):
"""
-
Custon base_transfer class, implements Transfer.py
+
Custom base_transfer class, implements Transfer.py
This implementation can restrict and prolong between nd meshes with dirichlet-0 or periodic boundaries
-
via matrix-vector products
+
via matrix-vector products.
Attributes:
Rspace: spatial restriction matrix, dim. Nf x Nc
@@ -71,7 +70,7 @@
Source code for implementations.transfer_classes.TransferMesh """
# invoke super initialization
-
super ( mesh_to_mesh , self ) . __init__ ( fine_prob , coarse_prob , params )
+
super () . __init__ ( fine_prob , coarse_prob , params )
if self . params . rorder % 2 != 0 :
raise TransferError ( 'Need even order for restriction' )
@@ -196,51 +195,31 @@
Source code for implementations.transfer_classes.TransferMesh Args:
F: the fine level data (easier to access than via the fine attribute)
"""
- if isinstance ( F , mesh ):
- G = self . coarse_prob . dtype_u ( self . coarse_prob . init )
- if hasattr ( self . fine_prob , 'ncomp' ):
- for i in range ( self . fine_prob . ncomp ):
- tmpF = F [ ... , i ] . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G [ ... , i ] = tmpG . reshape ( self . coarse_prob . nvars )
- else :
- tmpF = F . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G [:] = tmpG . reshape ( self . coarse_prob . nvars )
- elif isinstance ( F , imex_mesh ):
- G = self . coarse_prob . dtype_f ( self . coarse_prob . init )
- if hasattr ( self . fine_prob , 'ncomp' ):
- for i in range ( self . fine_prob . ncomp ):
- tmpF = F . impl [ ... , i ] . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G . impl [ ... , i ] = tmpG . reshape ( self . coarse_prob . nvars )
- tmpF = F . expl [ ... , i ] . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G . expl [ ... , i ] = tmpG . reshape ( self . coarse_prob . nvars )
- else :
- tmpF = F . impl . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G . impl [:] = tmpG . reshape ( self . coarse_prob . nvars )
- tmpF = F . expl . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G . expl [:] = tmpG . reshape ( self . coarse_prob . nvars )
- elif isinstance ( F , comp2_mesh ):
- G = self . coarse_prob . dtype_f ( self . coarse_prob . init )
+ G = type ( F )( self . coarse_prob . init )
+
+ def _restrict ( fine , coarse ):
if hasattr ( self . fine_prob , 'ncomp' ):
for i in range ( self . fine_prob . ncomp ):
- tmpF = F . comp1 [ ... , i ] . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G . comp1 [ ... , i ] = tmpG . reshape ( self . coarse_prob . nvars )
- tmpF = F . comp2 [ ... , i ] . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G . comp2 [ ... , i ] = tmpG . reshape ( self . coarse_prob . nvars )
+ if fine . shape [ - 1 ] == self . fine_prob . ncomp :
+ tmpF = fine [ ... , i ] . flatten ()
+ tmpG = self . Rspace . dot ( tmpF )
+ coarse [ ... , i ] = tmpG . reshape ( self . coarse_prob . nvars )
+ elif fine . shape [ 0 ] == self . fine_prob . ncomp :
+ tmpF = fine [ i , ... ] . flatten ()
+ tmpG = self . Rspace . dot ( tmpF )
+ coarse [ i , ... ] = tmpG . reshape ( self . coarse_prob . nvars )
+ else :
+ raise TransferError ( 'Don \' t know how to restrict for this problem with multiple components' )
else :
- tmpF = F . comp1 . flatten ()
- tmpG = self . Rspace . dot ( tmpF )
- G . comp1 [:] = tmpG . reshape ( self . coarse_prob . nvars )
- tmpF = F . comp2 . flatten ()
+ tmpF = fine . flatten ()
tmpG = self . Rspace . dot ( tmpF )
- G . comp2 [:] = tmpG . reshape ( self . coarse_prob . nvars )
+ coarse [:] = tmpG . reshape ( self . coarse_prob . nvars )
+
+ if hasattr ( type ( F ), 'components' ):
+ for comp in F . components :
+ _restrict ( F . __getattr__ ( comp ), G . __getattr__ ( comp ))
+ elif type ( F ) . __name__ == 'mesh' :
+ _restrict ( F , G )
else :
raise TransferError ( 'Wrong data type for restriction, got %s ' % type ( F ))
return G
@@ -254,51 +233,32 @@
Source code for implementations.transfer_classes.TransferMesh Args:
G: the coarse level data (easier to access than via the coarse attribute)
"""
- if isinstance ( G , mesh ):
- F = self . fine_prob . dtype_u ( self . fine_prob . init )
- if hasattr ( self . fine_prob , 'ncomp' ):
- for i in range ( self . fine_prob . ncomp ):
- tmpG = G [ ... , i ] . flatten ()
- tmpF = self . Pspace . dot ( tmpG )
- F [ ... , i ] = tmpF . reshape ( self . fine_prob . nvars )
- else :
- tmpG = G . flatten ()
- tmpF = self . Pspace . dot ( tmpG )
- F [:] = tmpF . reshape ( self . fine_prob . nvars )
- elif isinstance ( G , imex_mesh ):
- F = self . fine_prob . dtype_f ( self . fine_prob . init )
- if hasattr ( self . fine_prob , 'ncomp' ):
- for i in range ( self . fine_prob . ncomp ):
- tmpG = G . impl [ ... , i ] . flatten ()
- tmpF = self . Pspace . dot ( tmpG )
- F . impl [ ... , i ] = tmpF . reshape ( self . fine_prob . nvars )
- tmpG = G . expl [ ... , i ] . flatten ()
- tmpF = self . Rspace . dot ( tmpG )
- F . expl [ ... , i ] = tmpF . reshape ( self . fine_prob . nvars )
- else :
- tmpG = G . impl . flatten ()
- tmpF = self . Pspace . dot ( tmpG )
- F . impl [:] = tmpF . reshape ( self . fine_prob . nvars )
- tmpG = G . expl . flatten ()
- tmpF = self . Pspace . dot ( tmpG )
- F . expl [:] = tmpF . reshape ( self . fine_prob . nvars )
- elif isinstance ( G , comp2_mesh ):
- F = self . fine_prob . dtype_f ( self . fine_prob . init )
+ F = type ( G )( self . fine_prob . init )
+
+ def _prolong ( coarse , fine ):
if hasattr ( self . fine_prob , 'ncomp' ):
for i in range ( self . fine_prob . ncomp ):
- tmpG = G . comp1 [ ... , i ] . flatten ()
- tmpF = self . Pspace . dot ( tmpG )
- F . comp1 [ ... , i ] = tmpF . reshape ( self . fine_prob . nvars )
- tmpG = G . comp2 [ ... , i ] . flatten ()
- tmpF = self . Rspace . dot ( tmpG )
- F . comp2 [ ... , i ] = tmpF . reshape ( self . fine_prob . nvars )
+ if coarse . shape [ - 1 ] == self . fine_prob . ncomp :
+ tmpG = coarse [ ... , i ] . flatten ()
+ tmpF = self . Pspace . dot ( tmpG )
+ fine [ ... , i ] = tmpF . reshape ( self . fine_prob . nvars )
+ elif coarse . shape [ 0 ] == self . fine_prob . ncomp :
+ tmpG = coarse [ i , ... ] . flatten ()
+ tmpF = self . Pspace . dot ( tmpG )
+ fine [ i , ... ] = tmpF . reshape ( self . fine_prob . nvars )
+ else :
+ raise TransferError ( 'Don \' t know how to prolong for this problem with multiple components' )
else :
- tmpG = G . comp1 . flatten ()
- tmpF = self . Pspace . dot ( tmpG )
- F . comp1 [:] = tmpF . reshape ( self . fine_prob . nvars )
- tmpG = G . comp2 . flatten ()
+ tmpG = coarse . flatten ()
tmpF = self . Pspace . dot ( tmpG )
- F . comp2 [:] = tmpF . reshape ( self . fine_prob . nvars )
+ fine [:] = tmpF . reshape ( self . fine_prob . nvars )
+ return fine
+
+ if hasattr ( type ( F ), 'components' ):
+ for comp in G . components :
+ _prolong ( G . __getattr__ ( comp ), F . __getattr__ ( comp ))
+ elif type ( G ) . __name__ == 'mesh' :
+ F [:] = _prolong ( G , F )
else :
raise TransferError ( 'Wrong data type for prolongation, got %s ' % type ( G ))
return F
diff --git a/_modules/implementations/transfer_classes/TransferMesh_FFT.html b/_modules/implementations/transfer_classes/TransferMesh_FFT.html
index 21ea11fc7b..5083d9f232 100644
--- a/_modules/implementations/transfer_classes/TransferMesh_FFT.html
+++ b/_modules/implementations/transfer_classes/TransferMesh_FFT.html
@@ -41,7 +41,6 @@
Source code for implementations.transfer_classes.TransferMesh_FFT from
pySDC.core.Errors import TransferError
from pySDC.core.SpaceTransfer import space_transfer
-
from pySDC.implementations.datatype_classes.mesh import mesh , imex_mesh
@@ -67,9 +66,9 @@
Source code for implementations.transfer_classes.TransferMesh_FFT params: parameters for the transfer operators
"""
# invoke super initialization
-
super ( mesh_to_mesh_fft , self ) . __init__ ( fine_prob , coarse_prob , params )
+
super () . __init__ ( fine_prob , coarse_prob , params )
-
self . ratio = int ( self . fine_prob . params . nvars / self . coarse_prob . params . nvars )
+
self . ratio = int ( self . fine_prob . nvars / self . coarse_prob . nvars )
[docs]
@@ -80,11 +79,11 @@
Source code for implementations.transfer_classes.TransferMesh_FFT Args:
F: the fine level data (easier to access than via the fine attribute)
"""
-
if isinstance ( F , mesh ):
-
G = mesh ( self . coarse_prob . init , val = 0.0 )
+
G = type ( F )( self . coarse_prob . init , val = 0.0 )
+
+
if type ( F ) . __name__ == 'mesh' :
G [:] = F [:: self . ratio ]
-
elif isinstance ( F , imex_mesh ):
-
G = imex_mesh ( self . coarse_prob . init , val = 0.0 )
+
elif type ( F ) . __name__ == 'imex_mesh' :
G . impl [:] = F . impl [:: self . ratio ]
G . expl [:] = F . expl [:: self . ratio ]
else :
@@ -101,28 +100,21 @@
Source code for implementations.transfer_classes.TransferMesh_FFT Args:
G: the coarse level data (easier to access than via the coarse attribute)
"""
- if isinstance ( G , mesh ):
- F = mesh ( self . fine_prob . init , val = 0.0 )
- tmpG = np . fft . rfft ( G )
- tmpF = np . zeros ( self . fine_prob . init [ 0 ] // 2 + 1 , dtype = np . complex128 )
- halfG = int ( self . coarse_prob . init [ 0 ] / 2 )
- tmpF [ 0 : halfG ] = tmpG [ 0 : halfG ]
- tmpF [ - 1 ] = tmpG [ - 1 ]
- F [:] = np . fft . irfft ( tmpF ) * self . ratio
- elif isinstance ( G , imex_mesh ):
- F = imex_mesh ( G )
- tmpG_impl = np . fft . rfft ( G . impl )
- tmpF_impl = np . zeros ( self . fine_prob . init [ 0 ] // 2 + 1 , dtype = np . complex128 )
- halfG = int ( self . coarse_prob . init [ 0 ] / 2 )
- tmpF_impl [ 0 : halfG ] = tmpG_impl [ 0 : halfG ]
- tmpF_impl [ - 1 ] = tmpG_impl [ - 1 ]
- F . impl [:] = np . fft . irfft ( tmpF_impl ) * self . ratio
- tmpG_expl = np . fft . rfft ( G . expl )
- tmpF_expl = np . zeros ( self . fine_prob . init [ 0 ] // 2 + 1 , dtype = np . complex128 )
- halfG = int ( self . coarse_prob . init [ 0 ] / 2 )
- tmpF_expl [ 0 : halfG ] = tmpG_expl [ 0 : halfG ]
- tmpF_expl [ - 1 ] = tmpG_expl [ - 1 ]
- F . expl [:] = np . fft . irfft ( tmpF_expl ) * self . ratio
+ F = type ( G )( self . fine_prob . init , val = 0.0 )
+
+ def _prolong ( coarse ):
+ coarse_hat = np . fft . rfft ( coarse )
+ fine_hat = np . zeros ( self . fine_prob . init [ 0 ] // 2 + 1 , dtype = np . complex128 )
+ half_idx = self . coarse_prob . init [ 0 ] // 2
+ fine_hat [ 0 : half_idx ] = coarse_hat [ 0 : half_idx ]
+ fine_hat [ - 1 ] = coarse_hat [ - 1 ]
+ return np . fft . irfft ( fine_hat ) * self . ratio
+
+ if type ( G ) . __name__ == 'mesh' :
+ F [:] = _prolong ( G )
+ elif type ( G ) . __name__ == 'imex_mesh' :
+ F . impl [:] = _prolong ( G . impl )
+ F . expl [:] = _prolong ( G . expl )
else :
raise TransferError ( 'Unknown data type, got %s ' % type ( G ))
return F
diff --git a/_modules/implementations/transfer_classes/TransferMesh_MPIFFT.html b/_modules/implementations/transfer_classes/TransferMesh_MPIFFT.html
index 031f206bc3..38e699458c 100644
--- a/_modules/implementations/transfer_classes/TransferMesh_MPIFFT.html
+++ b/_modules/implementations/transfer_classes/TransferMesh_MPIFFT.html
@@ -47,7 +47,7 @@
Source code for implementations.transfer_classes.TransferMesh_MPIFFT [docs]
class fft_to_fft ( space_transfer ):
"""
- Custon base_transfer class, implements Transfer.py
+ Custom base_transfer class, implements Transfer.py
This implementation can restrict and prolong between PMESH datatypes meshes with FFT for periodic boundaries
@@ -63,7 +63,7 @@ Source code for implementations.transfer_classes.TransferMesh_MPIFFT params: parameters for the transfer operators
"""
# invoke super initialization
- super ( fft_to_fft , self ) . __init__ ( fine_prob , coarse_prob , params )
+ super () . __init__ ( fine_prob , coarse_prob , params )
assert self . fine_prob . spectral == self . coarse_prob . spectral
@@ -92,24 +92,38 @@ Source code for implementations.transfer_classes.TransferMesh_MPIFFT Args:
F: the fine level data (easier to access than via the fine attribute)
"""
- if isinstance ( F , mesh ):
+ G = type ( F )( self . coarse_prob . init )
+
+ def _restrict ( fine , coarse ):
if self . spectral :
- G = self . coarse_prob . dtype_u ( self . coarse_prob . init )
if hasattr ( self . fine_prob , 'ncomp' ):
for i in range ( self . fine_prob . ncomp ):
- tmpF = newDistArray ( self . fine_prob . fft , False )
- tmpF = self . fine_prob . fft . backward ( F [ ... , i ], tmpF )
- tmpG = tmpF [:: int ( self . ratio [ 0 ]), :: int ( self . ratio [ 1 ])]
- G [ ... , i ] = self . coarse_prob . fft . forward ( tmpG , G [ ... , i ])
+ if fine . shape [ - 1 ] == self . fine_prob . ncomp :
+ tmpF = newDistArray ( self . fine_prob . fft , False )
+ tmpF = self . fine_prob . fft . backward ( fine [ ... , i ], tmpF )
+ tmpG = tmpF [:: int ( self . ratio [ 0 ]), :: int ( self . ratio [ 1 ])]
+ coarse [ ... , i ] = self . coarse_prob . fft . forward ( tmpG , coarse [ ... , i ])
+ elif fine . shape [ 0 ] == self . fine_prob . ncomp :
+ tmpF = newDistArray ( self . fine_prob . fft , False )
+ tmpF = self . fine_prob . fft . backward ( fine [ i , ... ], tmpF )
+ tmpG = tmpF [:: int ( self . ratio [ 0 ]), :: int ( self . ratio [ 1 ])]
+ coarse [ i , ... ] = self . coarse_prob . fft . forward ( tmpG , coarse [ i , ... ])
+ else :
+ raise TransferError ( 'Don \' t know how to restrict for this problem with multiple components' )
else :
- tmpF = self . fine_prob . fft . backward ( F )
+ tmpF = self . fine_prob . fft . backward ( fine )
tmpG = tmpF [:: int ( self . ratio [ 0 ]), :: int ( self . ratio [ 1 ])]
- G [:] = self . coarse_prob . fft . forward ( tmpG , G )
+ coarse [:] = self . coarse_prob . fft . forward ( tmpG , coarse )
else :
- G = self . coarse_prob . dtype_u ( self . coarse_prob . init )
- G [:] = F [:: int ( self . ratio [ 0 ]), :: int ( self . ratio [ 1 ])]
+ coarse [:] = fine [:: int ( self . ratio [ 0 ]), :: int ( self . ratio [ 1 ])]
+
+ if hasattr ( type ( F ), 'components' ):
+ for comp in F . components :
+ _restrict ( F . __getattr__ ( comp ), G . __getattr__ ( comp ))
+ elif type ( F ) . __name__ == 'mesh' :
+ _restrict ( F , G )
else :
- raise TransferError ( 'Unknown data type, got %s ' % type ( F ))
+ raise TransferError ( 'Wrong data type for restriction, got %s ' % type ( F ))
return G
@@ -123,52 +137,39 @@
Source code for implementations.transfer_classes.TransferMesh_MPIFFT Args:
G: the coarse level data (easier to access than via the coarse attribute)
"""
- if isinstance ( G , mesh ):
- if self . spectral :
- F = self . fine_prob . dtype_u ( self . fine_prob . init )
- if hasattr ( self . fine_prob , 'ncomp' ):
- for i in range ( self . fine_prob . ncomp ):
- tmpF = self . fft_pad . backward ( G [ ... , i ])
- F [ ... , i ] = self . fine_prob . fft . forward ( tmpF , F [ ... , i ])
- else :
- tmpF = self . fft_pad . backward ( G )
- F [:] = self . fine_prob . fft . forward ( tmpF , F )
- else :
- F = self . fine_prob . dtype_u ( self . fine_prob . init )
- if hasattr ( self . fine_prob , 'ncomp' ):
- for i in range ( self . fine_prob . ncomp ):
- G_hat = self . coarse_prob . fft . forward ( G [ ... , i ])
- F [ ... , i ] = self . fft_pad . backward ( G_hat , F [ ... , i ])
- else :
- G_hat = self . coarse_prob . fft . forward ( G )
- F [:] = self . fft_pad . backward ( G_hat , F )
- elif isinstance ( G , imex_mesh ):
+ F = type ( G )( self . fine_prob . init )
+
+ def _prolong ( coarse , fine ):
if self . spectral :
- F = self . fine_prob . dtype_f ( self . fine_prob . init )
if hasattr ( self . fine_prob , 'ncomp' ):
for i in range ( self . fine_prob . ncomp ):
- tmpF = self . fft_pad . backward ( G . impl [ ... , i ])
- F . impl [ ... , i ] = self . fine_prob . fft . forward ( tmpF , F . impl [ ... , i ])
- tmpF = self . fft_pad . backward ( G . expl [ ... , i ])
- F . expl [ ... , i ] = self . fine_prob . fft . forward ( tmpF , F . expl [ ... , i ])
+ if coarse . shape [ - 1 ] == self . fine_prob . ncomp :
+ tmpF = self . fft_pad . backward ( coarse [ ... , i ])
+ fine [ ... , i ] = self . fine_prob . fft . forward ( tmpF , fine [ ... , i ])
+ elif coarse . shape [ 0 ] == self . fine_prob . ncomp :
+ tmpF = self . fft_pad . backward ( coarse [ i , ... ])
+ fine [ i , ... ] = self . fine_prob . fft . forward ( tmpF , fine [ i , ... ])
+ else :
+ raise TransferError ( 'Don \' t know how to prolong for this problem with multiple components' )
+
else :
- tmpF = self . fft_pad . backward ( G . impl )
- F . impl [:] = self . fine_prob . fft . forward ( tmpF , F . impl )
- tmpF = self . fft_pad . backward ( G . expl )
- F . expl [:] = self . fine_prob . fft . forward ( tmpF , F . expl )
+ tmpF = self . fft_pad . backward ( coarse )
+ fine [:] = self . fine_prob . fft . forward ( tmpF , fine )
else :
- F = self . fine_prob . dtype_f ( self . fine_prob . init )
if hasattr ( self . fine_prob , 'ncomp' ):
for i in range ( self . fine_prob . ncomp ):
- G_hat = self . coarse_prob . fft . forward ( G . impl [ ... , i ])
- F . impl [ ... , i ] = self . fft_pad . backward ( G_hat , F . impl [ ... , i ])
- G_hat = self . coarse_prob . fft . forward ( G . expl [ ... , i ])
- F . expl [ ... , i ] = self . fft_pad . backward ( G_hat , F . expl [ ... , i ])
+ G_hat = self . coarse_prob . fft . forward ( coarse [ ... , i ])
+ fine [ ... , i ] = self . fft_pad . backward ( G_hat , fine [ ... , i ])
else :
- G_hat = self . coarse_prob . fft . forward ( G . impl )
- F . impl [:] = self . fft_pad . backward ( G_hat , F . impl )
- G_hat = self . coarse_prob . fft . forward ( G . expl )
- F . expl [:] = self . fft_pad . backward ( G_hat , F . expl )
+ G_hat = self . coarse_prob . fft . forward ( coarse )
+ fine [:] = self . fft_pad . backward ( G_hat , fine )
+
+ if hasattr ( type ( F ), 'components' ):
+ for comp in F . components :
+ _prolong ( G . __getattr__ ( comp ), F . __getattr__ ( comp ))
+ elif type ( G ) . __name__ == 'mesh' :
+ _prolong ( G , F )
+
else :
raise TransferError ( 'Unknown data type, got %s ' % type ( G ))
diff --git a/coverage/class_index.html b/coverage/class_index.html
index 1928e5f341..6146027b8c 100644
--- a/coverage/class_index.html
+++ b/coverage/class_index.html
@@ -11,7 +11,7 @@
Coverage report:
- 80%
+ 81%
@@ -1595,10 +1595,10 @@
pySDC/implementations/problem_classes/Brusselator.py Brusselator 34
+ 35
6
22
- 82%
+ 83%
pySDC/implementations/problem_classes/Brusselator.py
pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion 53
+ 54
0
0
- 100%
+ 100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_linear pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_linear 25
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion 80
2
1
98%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear 80
2
1
@@ -2723,10 +2723,10 @@
pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order 62
+ 63
1
2
- 98%
+ 98%
pySDC/implementations/sweeper_classes/imex_1st_order.py
100%
- pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh 135
- 90
- 8
- 33%
+ pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh 92
+ 25
+ 10
+ 73%
pySDC/implementations/transfer_classes/TransferMesh.py (no class) 10
+ 9
0
0
- 100%
+ 100%
- pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft 33
- 33
+ pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft 23
+ 0
2
- 0%
+ 100%
pySDC/implementations/transfer_classes/TransferMesh_FFT.py (no class) 8
- 8
+ 7
0
- 0%
+ 0
+ 100%
pySDC/implementations/transfer_classes/TransferMesh_FFT2D.py
pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py fft_to_fft 64
- 24
- 2
- 62%
+ 58
+ 8
+ 4
+ 86%
pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py
Total
- 17230
- 3389
- 1760
- 80%
+ 17172
+ 3267
+ 1764
+ 81%
@@ -5325,7 +5325,7 @@
coverage.py v7.5.0 ,
- created at 2024-04-26 10:16 +0000
+ created at 2024-04-27 18:43 +0000
diff --git a/coverage/coverage-badge.svg b/coverage/coverage-badge.svg
index 2fc5e0dec2..54c626e737 100644
--- a/coverage/coverage-badge.svg
+++ b/coverage/coverage-badge.svg
@@ -1 +1 @@
-coverage: 77.43% coverage coverage 77.43% 77.43% coverage: 77.85% coverage coverage 77.85% 77.85%
Coverage report:
- 77%
+ 78%
@@ -4947,46 +4947,46 @@
pySDC/implementations/problem_classes/Brusselator.py Brusselator.__init__ 5
+ 6
0
0
- 100%
+ 100%
- pySDC/implementations/problem_classes/Brusselator.py Brusselator._eval_explicit_part pySDC/implementations/problem_classes/Brusselator.py Brusselator._eval_explicit_part 8
2
0
75%
- pySDC/implementations/problem_classes/Brusselator.py Brusselator.eval_f pySDC/implementations/problem_classes/Brusselator.py Brusselator.eval_f 6
0
0
100%
- pySDC/implementations/problem_classes/Brusselator.py Brusselator.solve_system pySDC/implementations/problem_classes/Brusselator.py Brusselator.solve_system 4
0
0
100%
- pySDC/implementations/problem_classes/Brusselator.py Brusselator.u_exact pySDC/implementations/problem_classes/Brusselator.py Brusselator.u_exact 9
2
0
78%
- pySDC/implementations/problem_classes/Brusselator.py Brusselator.u_exact.eval_rhs pySDC/implementations/problem_classes/Brusselator.py Brusselator.u_exact.eval_rhs 2
2
0
@@ -5659,110 +5659,110 @@
pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion.__init__ 9
+ 10
0
0
- 100%
+ 100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion.eval_f pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion.eval_f 22
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion.solve_system pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion.solve_system 11
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion.u_exact pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_diffusion.u_exact 11
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_linear.__init__ pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_linear.__init__ 3
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_linear.eval_f pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_imex_linear.eval_f 22
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.__init__ pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.__init__ 6
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.eval_f pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.eval_f 22
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.solve_system_1 pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.solve_system_1 2
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.solve_system_2 pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_diffusion.solve_system_2 50
2
1
96%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.__init__ pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.__init__ 6
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.eval_f pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.eval_f 22
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.solve_system_1 pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.solve_system_1 2
0
0
100%
- pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.solve_system_2 pySDC/implementations/problem_classes/GrayScott_MPIFFT.py grayscott_mi_linear.solve_system_2 50
2
1
@@ -8507,46 +8507,46 @@
pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.integrate 7
+ 8
0
0
- 100%
+ 100%
- pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.update_nodes pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.update_nodes 19
0
0
100%
- pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.compute_end_point pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.compute_end_point 10
1
0
90%
- pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.get_sweeper_mats pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.get_sweeper_mats 4
0
0
100%
- pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.get_scalar_problems_sweeper_mats pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.get_scalar_problems_sweeper_mats 9
0
2
100%
- pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.get_scalar_problems_manysweep_mat pySDC/implementations/sweeper_classes/imex_1st_order.py imex_1st_order.get_scalar_problems_manysweep_mat 6
0
0
@@ -8793,68 +8793,92 @@
100%
- pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.__init__ pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.__init__ 49
- 18
+ 7
6
- 63%
+ 86%
- pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.restrict 43
- 36
+ pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.restrict 8
+ 0
1
- 16%
+ 100%
- pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.prolong 43
- 36
+ pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.restrict._restrict 13
+ 9
+ 1
+ 31%
+
+
+ pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.prolong 8
+ 0
+ 1
+ 100%
+
+
+ pySDC/implementations/transfer_classes/TransferMesh.py mesh_to_mesh.prolong._prolong 14
+ 9
1
- 16%
+ 36%
pySDC/implementations/transfer_classes/TransferMesh.py (no function) 10
+ 9
0
0
- 100%
+ 100%
- pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft.__init__ 2
+ pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft.__init__ 2
0
- 0%
+ 0
+ 100%
- pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft.restrict 8
- 8
+ pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft.restrict 7
+ 0
1
- 0%
+ 100%
- pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft.prolong 23
- 23
+ pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft.prolong 8
+ 0
1
- 0%
+ 100%
+
+
+ pySDC/implementations/transfer_classes/TransferMesh_FFT.py mesh_to_mesh_fft.prolong._prolong 6
+ 0
+ 0
+ 100%
pySDC/implementations/transfer_classes/TransferMesh_FFT.py (no function) 8
- 8
+ 7
0
- 0%
+ 0
+ 100%
pySDC/implementations/transfer_classes/TransferMesh_FFT2D.py
pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py fft_to_fft.restrict 15
+ 8
0
1
- 100%
+ 100%
- pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py fft_to_fft.prolong 41
- 24
+ pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py fft_to_fft.restrict._restrict 17
+ 5
1
- 41%
+ 71%
+
+
+ pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py fft_to_fft.prolong 8
+ 0
+ 1
+ 100%
+
+
+ pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py fft_to_fft.prolong._prolong 17
+ 3
+ 1
+ 82%
pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py
Total
- 26135
- 5899
- 2841
- 77%
+ 26077
+ 5777
+ 2845
+ 78%
@@ -16453,7 +16493,7 @@
coverage.py v7.5.0 ,
- created at 2024-04-26 10:16 +0000
+ created at 2024-04-27 18:43 +0000
diff --git a/coverage/index.html b/coverage/index.html
index 3f7996ec43..8617e4b511 100644
--- a/coverage/index.html
+++ b/coverage/index.html
@@ -11,7 +11,7 @@
Coverage report:
- 77%
+ 78%
@@ -541,10 +541,10 @@
pySDC/implementations/problem_classes/Brusselator.py 43
+ 44
6
24
- 86%
+ 86%
pySDC/implementations/problem_classes/BuckConverter.py
pySDC/implementations/problem_classes/GrayScott_MPIFFT.py 266
+ 267
4
2
- 98%
+ 99%
pySDC/implementations/problem_classes/HarmonicOscillator.py
pySDC/implementations/sweeper_classes/imex_1st_order.py 72
+ 73
1
2
- 99%
+ 99%
pySDC/implementations/sweeper_classes/imex_1st_order_MPI.py
pySDC/implementations/transfer_classes/TransferMesh.py 145
- 90
- 8
- 38%
+ 101
+ 25
+ 10
+ 75%
pySDC/implementations/transfer_classes/TransferMesh_FFT.py 41
- 41
+ 30
+ 0
2
- 0%
+ 100%
pySDC/implementations/transfer_classes/TransferMesh_FFT2D.py
pySDC/implementations/transfer_classes/TransferMesh_MPIFFT.py 72
- 24
- 2
- 67%
+ 66
+ 8
+ 4
+ 88%
pySDC/implementations/transfer_classes/TransferMesh_NoCoarse.py
Total
- 26135
- 5899
- 2844
- 77%
+ 26077
+ 5777
+ 2848
+ 78%
@@ -2386,7 +2386,7 @@
coverage.py v7.5.0 ,
- created at 2024-04-26 10:16 +0000
+ created at 2024-04-27 18:43 +0000
diff --git a/coverage/status.json b/coverage/status.json
index 1ab5f348c6..30aeb34df2 100644
--- a/coverage/status.json
+++ b/coverage/status.json
@@ -1 +1 @@
-{"note":"This file is an internal implementation detail to speed up HTML report generation. Its format can change at any time. 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+ created at 2024-04-27 18:43 +0000
» next
coverage.py v7.5.0 ,
- created at 2024-04-26 10:16 +0000
+ created at 2024-04-27 18:43 +0000
diff --git a/coverage/z_21a23c20069de70c_HookClass_pde_py.html b/coverage/z_21a23c20069de70c_HookClass_pde_py.html
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+++ b/coverage/z_21a23c20069de70c_HookClass_pde_py.html
@@ -65,7 +65,7 @@
» next
coverage.py v7.5.0 ,
- created at 2024-04-26 10:16 +0000
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» next
coverage.py v7.5.0 ,
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index dfb37bbc02..0c06ef17e7 100644
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@@ -65,7 +65,7 @@
» next
coverage.py v7.5.0 ,
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+ created at 2024-04-27 18:43 +0000
» next
coverage.py v7.5.0 ,
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diff --git a/coverage/z_3017878c2b4bc866_cupy_mesh_py.html b/coverage/z_3017878c2b4bc866_cupy_mesh_py.html
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+++ b/coverage/z_3017878c2b4bc866_cupy_mesh_py.html
@@ -65,7 +65,7 @@
» next
coverage.py v7.5.0 ,
- created at 2024-04-26 10:16 +0000
+ created at 2024-04-27 18:43 +0000
» next
coverage.py v7.5.0 ,
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+ created at 2024-04-27 18:43 +0000
diff --git a/coverage/z_3017878c2b4bc866_fenics_mesh_py.html b/coverage/z_3017878c2b4bc866_fenics_mesh_py.html
index e3d39ee986..f2dcba0d01 100644
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+++ b/coverage/z_3017878c2b4bc866_fenics_mesh_py.html
@@ -65,7 +65,7 @@
» next
coverage.py v7.5.0 ,
- created at 2024-04-26 10:16 +0000
+ created at 2024-04-27 18:43 +0000
» next
coverage.py v7.5.0 ,
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