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-b, --bed BED file with repeat coordinates
-o, --out Output tsv path
--trid TRID of a specific repeat to analyze, should be in the BED file
-@ [default: 1]
-a, --sample-a Prefix of first sample VCF and spanning reads BAM files
-b, --sample-b Prefix of second sample VCF and spanning reads BAM files
they are both -b and using the abbreviation causes error: the argument '--bed <BED>' cannot be used multiple times
The text was updated successfully, but these errors were encountered:
-b, --bed BED file with repeat coordinates
-o, --out Output tsv path
--trid TRID of a specific repeat to analyze, should be in the BED file
-@ [default: 1]
-a, --sample-a Prefix of first sample VCF and spanning reads BAM files
-b, --sample-b Prefix of second sample VCF and spanning reads BAM files
they are both
-b
and using the abbreviation causeserror: the argument '--bed <BED>' cannot be used multiple times
The text was updated successfully, but these errors were encountered: