diff --git a/api/Pipfile b/api/Pipfile index 710a5cb6f22..06f758cb9ef 100755 --- a/api/Pipfile +++ b/api/Pipfile @@ -11,6 +11,7 @@ opentrons-shared-data = { editable = true, path = "../shared-data/python" } opentrons = { editable = true, path = "." } opentrons-hardware = { editable = true, path = "./../hardware", extras=["FLEX"] } numpy = "==1.22.3" +performance-metrics = {file = "../performance-metrics", editable = true} [dev-packages] # atomicwrites and colorama are pytest dependencies on windows, diff --git a/api/Pipfile.lock b/api/Pipfile.lock index cc9f3163e51..7e1048c7dd0 100644 --- a/api/Pipfile.lock +++ b/api/Pipfile.lock @@ -1,7 +1,7 @@ { "_meta": { "hash": { - "sha256": "f0d4979ecb4f125cef848e0ce31e3a5e9cded69abaf773ad90d00016f6d2a65d" + "sha256": "62d417a08e553971cf1ac79139160c9f57fa05a4b1f3628c03638869a66ea70c" }, "pipfile-spec": 6, "requires": {}, @@ -56,11 +56,11 @@ }, "idna": { "hashes": [ - "sha256:9ecdbbd083b06798ae1e86adcbfe8ab1479cf864e4ee30fe4e46a003d12491ca", - 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"sha256:206f5a15f2af3dbaee80769fb7dc6f249695e940acca08dfb2a4769fe61e538b", + "sha256:2884ed22e7d8961de1c9a05142eb69a247f120291bc0206a00a7642f09b5b715" ], "markers": "python_version >= '3.8'", - "version": "==3.17.0" + "version": "==3.18.1" } } } diff --git a/api/src/opentrons/__init__.py b/api/src/opentrons/__init__.py index ac4e0c54262..64e74772265 100755 --- a/api/src/opentrons/__init__.py +++ b/api/src/opentrons/__init__.py @@ -21,8 +21,12 @@ ROBOT_FIRMWARE_DIR, ) from opentrons.util import logging_config +from opentrons_shared_data.robot.dev_types import RobotTypeEnum +from opentrons.config import get_performance_metrics_data_dir +from opentrons.config.feature_flags import enable_performance_metrics from opentrons.protocols.types import ApiDeprecationError from opentrons.protocols.api_support.types import APIVersion +from performance_metrics import RobotContextTracker from ._version import version @@ -55,6 +59,8 @@ def __dir__() -> List[str]: SMOOTHIE_HEX_RE = re.compile("smoothie-(.*).hex") +_robot_context_tracker: RobotContextTracker | None = None + def _find_smoothie_file() -> Tuple[Path, str]: resources: List[Path] = [] @@ -83,7 +89,6 @@ def _get_motor_control_serial_port() -> Any: # TODO(mc, 2021-08-01): raise a more informative exception than # IndexError if a valid serial port is not found port = get_ports_by_name(device_name=smoothie_id)[0] - log.info(f"Connecting to motor controller at port {port}") return port @@ -139,6 +144,22 @@ async def _create_thread_manager() -> ThreadManagedHardware: return thread_manager +def get_robot_context_tracker() -> RobotContextTracker: + global _robot_context_tracker + + if _robot_context_tracker: + return _robot_context_tracker + else: + robot_type = robot_configs.load().model + _robot_context_tracker = RobotContextTracker( + storage_dir=get_performance_metrics_data_dir(), + should_track=enable_performance_metrics( + RobotTypeEnum.robot_literal_to_enum(robot_type) + ), + ) + return _robot_context_tracker + + async def initialize() -> ThreadManagedHardware: """ Initialize the Opentrons hardware returning a hardware instance. diff --git a/api/src/opentrons/cli/analyze.py b/api/src/opentrons/cli/analyze.py index a42a4f5f868..b4f4f12ef32 100644 --- a/api/src/opentrons/cli/analyze.py +++ b/api/src/opentrons/cli/analyze.py @@ -28,6 +28,9 @@ ) from opentrons_shared_data.robot.dev_types import RobotType +from opentrons import get_robot_context_tracker + +_robot_context_tracker = get_robot_context_tracker() @click.command() @@ -63,6 +66,7 @@ def _get_input_files(files_and_dirs: Sequence[Path]) -> List[Path]: return results +@_robot_context_tracker.track_analysis() async def _analyze( files_and_dirs: Sequence[Path], json_output: Optional[AsyncPath], diff --git a/api/src/opentrons/config/__init__.py b/api/src/opentrons/config/__init__.py index ce867677777..a4571521211 100644 --- a/api/src/opentrons/config/__init__.py +++ b/api/src/opentrons/config/__init__.py @@ -284,6 +284,13 @@ class ConfigElement(NamedTuple): ConfigElementType.DIR, "The dir where module calibration is stored", ), + ConfigElement( + "performance_metrics_dir", + "Performance Metrics Directory", + Path("performance_metrics_data"), + ConfigElementType.DIR, + "The dir where performance metrics are stored", + ), ) #: The available configuration file elements to modify. All of these can be #: changed by editing opentrons.json, where the keys are the name elements, @@ -602,3 +609,7 @@ def get_tip_length_cal_path() -> Path: def get_custom_tiprack_def_path() -> Path: return get_opentrons_path("custom_tiprack_dir") + + +def get_performance_metrics_data_dir() -> Path: + return get_opentrons_path("performance_metrics_dir") diff --git a/api/tests/opentrons/cli/test_cli.py b/api/tests/opentrons/cli/test_cli.py index eae5aa31ccc..7592fa940d0 100644 --- a/api/tests/opentrons/cli/test_cli.py +++ b/api/tests/opentrons/cli/test_cli.py @@ -1,4 +1,6 @@ """Test cli execution.""" + + import json import tempfile import textwrap @@ -9,8 +11,15 @@ import pytest from click.testing import CliRunner +from opentrons import get_robot_context_tracker + -from opentrons.cli.analyze import analyze +# Enable tracking for the RobotContextTracker +# This must come before the import of the analyze CLI +context_tracker = get_robot_context_tracker() +context_tracker._should_track = True + +from opentrons.cli.analyze import analyze # noqa: E402 def _list_fixtures(version: int) -> Iterator[Path]: @@ -242,3 +251,24 @@ def test_python_error_line_numbers( assert result.json_output is not None [error] = result.json_output["errors"] assert error["detail"] == expected_detail + + +def test_tracking_of_analyis_with_robot_context_tracker(tmp_path: Path) -> None: + """Test that the RobotContextTracker tracks analysis.""" + protocol_source = textwrap.dedent( + """ + requirements = {"apiLevel": "2.15"} + + def run(protocol): + pass + """ + ) + + protocol_source_file = tmp_path / "protocol.py" + protocol_source_file.write_text(protocol_source, encoding="utf-8") + + before_analysis = len(context_tracker._storage) + + _get_analysis_result([protocol_source_file]) + + assert len(context_tracker._storage) == before_analysis + 1 diff --git a/performance-metrics/src/performance_metrics/__init__.py b/performance-metrics/src/performance_metrics/__init__.py index a92b39b6d7b..b5f2e760c19 100644 --- a/performance-metrics/src/performance_metrics/__init__.py +++ b/performance-metrics/src/performance_metrics/__init__.py @@ -1 +1,5 @@ """Opentrons performance metrics library.""" + +from .robot_context_tracker import RobotContextTracker + +__all__ = ["RobotContextTracker"] diff --git a/performance-metrics/src/performance_metrics/constants.py b/performance-metrics/src/performance_metrics/constants.py new file mode 100644 index 00000000000..79a285c1431 --- /dev/null +++ b/performance-metrics/src/performance_metrics/constants.py @@ -0,0 +1,14 @@ +"""Performance metrics constants.""" + +from enum import Enum +from pathlib import Path + + +class PerformanceMetricsFilename(Enum): + """Performance metrics filenames.""" + + ROBOT_CONTEXT = "robot_context.csv" + + def get_storage_file_path(self, base_path: Path) -> Path: + """Builds the full path to the file.""" + return base_path / self.value diff --git a/performance-metrics/src/performance_metrics/robot_context_tracker.py b/performance-metrics/src/performance_metrics/robot_context_tracker.py index 188129046ff..73449ca53ec 100644 --- a/performance-metrics/src/performance_metrics/robot_context_tracker.py +++ b/performance-metrics/src/performance_metrics/robot_context_tracker.py @@ -9,6 +9,7 @@ from typing import Callable, TypeVar from typing_extensions import ParamSpec from collections import deque +from performance_metrics.constants import PerformanceMetricsFilename from performance_metrics.datashapes import ( RawContextData, RobotContextState, @@ -21,13 +22,15 @@ class RobotContextTracker: """Tracks and stores robot context and execution duration for different operations.""" - def __init__(self, storage_file_path: Path, should_track: bool = False) -> None: + def __init__(self, storage_dir: Path, should_track: bool = False) -> None: """Initializes the RobotContextTracker with an empty storage list.""" self._storage: deque[RawContextData] = deque() - self._storage_file_path = storage_file_path + self.storage_file_path = ( + PerformanceMetricsFilename.ROBOT_CONTEXT.get_storage_file_path(storage_dir) + ) self._should_track = should_track - def track(self, state: RobotContextState) -> Callable: # type: ignore + def _track(self, state: RobotContextState) -> Callable: # type: ignore """Decorator factory for tracking the execution duration and state of robot operations. Args: @@ -63,13 +66,21 @@ def wrapper(*args: P.args, **kwargs: P.kwargs) -> R: return inner_decorator + def track_analysis(self) -> Callable: # type: ignore + """Decorator for tracking the analysis of a protocol.""" + return self._track(RobotContextState.ANALYZING_PROTOCOL) + + def track_startup(self) -> Callable: # type: ignore + """Decorator for tracking the startup of the robot.""" + return self._track(RobotContextState.STARTING_UP) + def store(self) -> None: """Returns the stored context data and clears the storage list.""" stored_data = self._storage.copy() self._storage.clear() rows_to_write = [context_data.csv_row() for context_data in stored_data] - os.makedirs(self._storage_file_path.parent, exist_ok=True) - with open(self._storage_file_path, "a") as storage_file: + os.makedirs(self.storage_file_path.parent, exist_ok=True) + with open(self.storage_file_path, "a") as storage_file: writer = csv.writer(storage_file) writer.writerow(RawContextData.headers()) writer.writerows(rows_to_write) diff --git a/performance-metrics/tests/performance_metrics/test_robot_context_tracker.py b/performance-metrics/tests/performance_metrics/test_robot_context_tracker.py index d78d5054fe6..78f81996540 100644 --- a/performance-metrics/tests/performance_metrics/test_robot_context_tracker.py +++ b/performance-metrics/tests/performance_metrics/test_robot_context_tracker.py @@ -18,29 +18,36 @@ @pytest.fixture def robot_context_tracker(tmp_path: Path) -> RobotContextTracker: """Fixture to provide a fresh instance of RobotContextTracker for each test.""" - return RobotContextTracker(storage_file_path=tmp_path, should_track=True) + return RobotContextTracker(tmp_path, should_track=True) + + +def test_file_path(tmp_path: Path, robot_context_tracker: RobotContextTracker) -> None: + """Tests the storage file path for the RobotContextTracker.""" + assert ( + robot_context_tracker.storage_file_path == tmp_path / "robot_context.csv" + ), "Storage file path should be correctly set." def test_robot_context_tracker(robot_context_tracker: RobotContextTracker) -> None: """Tests the tracking of various robot context states through RobotContextTracker.""" - @robot_context_tracker.track(state=RobotContextState.STARTING_UP) + @robot_context_tracker._track(state=RobotContextState.STARTING_UP) def starting_robot() -> None: sleep(STARTING_TIME) - @robot_context_tracker.track(state=RobotContextState.CALIBRATING) + @robot_context_tracker._track(state=RobotContextState.CALIBRATING) def calibrating_robot() -> None: sleep(CALIBRATING_TIME) - @robot_context_tracker.track(state=RobotContextState.ANALYZING_PROTOCOL) + @robot_context_tracker._track(state=RobotContextState.ANALYZING_PROTOCOL) def analyzing_protocol() -> None: sleep(ANALYZING_TIME) - @robot_context_tracker.track(state=RobotContextState.RUNNING_PROTOCOL) + @robot_context_tracker._track(state=RobotContextState.RUNNING_PROTOCOL) def running_protocol() -> None: sleep(RUNNING_TIME) - @robot_context_tracker.track(state=RobotContextState.SHUTTING_DOWN) + @robot_context_tracker._track(state=RobotContextState.SHUTTING_DOWN) def shutting_down_robot() -> None: sleep(SHUTTING_DOWN_TIME) @@ -78,11 +85,11 @@ def test_multiple_operations_single_state( ) -> None: """Tests tracking multiple operations within a single robot context state.""" - @robot_context_tracker.track(state=RobotContextState.RUNNING_PROTOCOL) + @robot_context_tracker._track(state=RobotContextState.RUNNING_PROTOCOL) def first_operation() -> None: sleep(RUNNING_TIME) - @robot_context_tracker.track(state=RobotContextState.RUNNING_PROTOCOL) + @robot_context_tracker._track(state=RobotContextState.RUNNING_PROTOCOL) def second_operation() -> None: sleep(RUNNING_TIME) @@ -104,7 +111,7 @@ def test_exception_handling_in_tracked_function( ) -> None: """Ensures exceptions in tracked operations are handled correctly.""" - @robot_context_tracker.track(state=RobotContextState.SHUTTING_DOWN) + @robot_context_tracker._track(state=RobotContextState.SHUTTING_DOWN) def error_prone_operation() -> None: sleep(SHUTTING_DOWN_TIME) raise RuntimeError("Simulated operation failure") @@ -126,7 +133,7 @@ async def test_async_operation_tracking( ) -> None: """Tests tracking of an asynchronous operation.""" - @robot_context_tracker.track(state=RobotContextState.ANALYZING_PROTOCOL) + @robot_context_tracker._track(state=RobotContextState.ANALYZING_PROTOCOL) async def async_analyzing_operation() -> None: await asyncio.sleep(ANALYZING_TIME) @@ -146,7 +153,7 @@ async def test_async_operation_timing_accuracy( ) -> None: """Tests the timing accuracy of an async operation tracking.""" - @robot_context_tracker.track(state=RobotContextState.RUNNING_PROTOCOL) + @robot_context_tracker._track(state=RobotContextState.RUNNING_PROTOCOL) async def async_running_operation() -> None: await asyncio.sleep(RUNNING_TIME) @@ -165,7 +172,7 @@ async def test_exception_in_async_operation( ) -> None: """Ensures exceptions in tracked async operations are correctly handled.""" - @robot_context_tracker.track(state=RobotContextState.SHUTTING_DOWN) + @robot_context_tracker._track(state=RobotContextState.SHUTTING_DOWN) async def async_error_prone_operation() -> None: await asyncio.sleep(SHUTTING_DOWN_TIME) raise RuntimeError("Simulated async operation failure") @@ -187,11 +194,11 @@ async def test_concurrent_async_operations( ) -> None: """Tests tracking of concurrent async operations.""" - @robot_context_tracker.track(state=RobotContextState.CALIBRATING) + @robot_context_tracker._track(state=RobotContextState.CALIBRATING) async def first_async_calibrating() -> None: await asyncio.sleep(CALIBRATING_TIME) - @robot_context_tracker.track(state=RobotContextState.CALIBRATING) + @robot_context_tracker._track(state=RobotContextState.CALIBRATING) async def second_async_calibrating() -> None: await asyncio.sleep(CALIBRATING_TIME) @@ -210,7 +217,7 @@ def test_no_tracking(tmp_path: Path) -> None: """Tests that operations are not tracked when tracking is disabled.""" robot_context_tracker = RobotContextTracker(tmp_path, should_track=False) - @robot_context_tracker.track(state=RobotContextState.STARTING_UP) + @robot_context_tracker._track(state=RobotContextState.STARTING_UP) def operation_without_tracking() -> None: sleep(STARTING_TIME) @@ -223,18 +230,17 @@ def operation_without_tracking() -> None: async def test_storing_to_file(tmp_path: Path) -> None: """Tests storing the tracked data to a file.""" - file_path = tmp_path / "test_file.csv" - robot_context_tracker = RobotContextTracker(file_path, should_track=True) + robot_context_tracker = RobotContextTracker(tmp_path, should_track=True) - @robot_context_tracker.track(state=RobotContextState.STARTING_UP) + @robot_context_tracker._track(state=RobotContextState.STARTING_UP) def starting_robot() -> None: sleep(STARTING_TIME) - @robot_context_tracker.track(state=RobotContextState.CALIBRATING) + @robot_context_tracker._track(state=RobotContextState.CALIBRATING) def calibrating_robot() -> None: sleep(CALIBRATING_TIME) - @robot_context_tracker.track(state=RobotContextState.ANALYZING_PROTOCOL) + @robot_context_tracker._track(state=RobotContextState.ANALYZING_PROTOCOL) def analyzing_protocol() -> None: sleep(ANALYZING_TIME) @@ -244,7 +250,7 @@ def analyzing_protocol() -> None: robot_context_tracker.store() - with open(file_path, "r") as file: + with open(robot_context_tracker.storage_file_path, "r") as file: lines = file.readlines() assert ( len(lines) == 4