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<html>
<head>
<!-- Global site tag (gtag.js) - Google Analytics -->
<script async src="https://www.googletagmanager.com/gtag/js?id=UA-129307456-2"></script>
<script>
window.dataLayer = window.dataLayer || [];
function gtag() { dataLayer.push(arguments); }
gtag('js', new Date());
gtag('config', 'UA-129307456-2');
</script>
<meta charset="utf-8">
<meta name="viewport" content="width=device-width, initial-scale=1, shrink-to-fit=no">
<title>OpenRiskNet e-infrastructure</title>
<link href="https://fonts.googleapis.com/css?family=Work+Sans:400,500,700" rel="stylesheet">
<link rel="stylesheet" href="https://openrisknet.org/static/frontend/styles/main.css">
<link rel="stylesheet" href="custom.css">
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<meta name="theme-color" content="#ffffff">
</head>
<body>
<header>
<nav class="navbar fixed-top navbar-toggleable-md navbar-light">
<div class="container">
<div class="navbar-brand">
<a href="index.html">
<img src="https://openrisknet.org/static/images/orn-logo.png" alt="OpenRiskNet">
</a>
<br/>
<a href="index.html" class="tagline">Risk assessment e-infrastructure</a>
</div>
<div class="navbar-collapse d-none d-lg-block" id="navbar">
<ul class="navbar-nav mt-2 mt-lg-0">
<li class="nav-item">
<a class="nav-link" href="https://openrisknet.org/about/" target="_blank">About</a>
</li>
</ul>
</div>
</div>
</nav>
</header>
<main>
<div class="page-home">
<section class="section section--highlight-secondary">
<div class="container">
<div class="row">
<div class="col-md-12">
<div class="hero">
<div class="hero__heading">OpenRiskNet <nobr>e-infrastructure</nobr></div>
<p>Welcome to The OpenRiskNet reference site.<br>
This page provides a landing page for end users that lists the available resources. The page is manually updated
when new resources become available.</p>
</div>
</div>
</div>
</div>
</section>
<section class="section section--text-listing">
<div class="container">
<h2>Login and Policies</h2>
<p>You need to register to be able to log in and access some services and agree to our Terms of use and Privacy policy.</p>
<ul>
<li>
<a href="https://openrisknet.org/e-infrastructure/login-instructions/">Login instructions</a>
</li>
<li>
<a href="https://openrisknet.org/privacy-policy/">Privacy policy</a>
</li>
<li>
<a href="https://openrisknet.org/terms-of-use/">Terms of use</a>
</li>
<!---li>
<a href="https://openrisknet.org/ip-policy/">Intelectual properties policy</a>
</li --->
</ul>
<h2>OpenRiskNet and Thrid-Party Workflow Managers and Scripting Tools</h2>
<ul>
<li>
<a href="https://squonk-notebook.prod.openrisknet.org/portal">Squonk Computational Notebook</a>
</li>
<li>
<a href="https://jupyter.prod.openrisknet.org/">Jupyter Notebooks</a><br>Please note that the jupyter notebook containers are large and needs some time to be deployed. Please press the "refresh" button of your browser until the interface is appearing. <a href="https://github.com/OpenRiskNet/notebooks">Example workflows can be accessed here.</a>
</li>
</ul>
<h2>Graphical User Interface Access to OpenRiskNet Applications</h2>
<ul>
<li>
<a href="https://lazar.prod.openrisknet.org/predict">Lazar Toxicity Predictions</a>
</li>
<!---li>
<a href="http://www.jaqpot.org">Jaqpot Modeling and Analysis Services</a>
</li--->
</ul>
<h2>OpenRiskNet Data Sources</h2>
<ul>
<li>
<a href="http://nanomaterialdb-test.prod.openrisknet.org/ambit/">Nanomaterial database </a>
</li>
<li>
<a href="https://data.douglasconnect.com/">Data Explorer serving ToxCast, ToxRefDB and TG-Gates data</a>
</li>
</ul>
<h2>Example Workflows based on OpenRiskNet Tools</h2>
<ul>
<li>
<a href="https://github.com/OpenRiskNet/notebooks/blob/master/BridgeDb/DataCure%2BAOPlink.ipynb">Jupyter Notebook: Access TG-Gates data for seleted compounds, select differentially expressed genes and identifier relevant pathways</a>
</li>
<li>
<a href="https://github.com/OpenRiskNet/notebooks/blob/master/DataCure/LTKB/LTKB_dataprep.ipynb">Jupyter Notebook: Cleaning LTKB data prior to generating predictive models</a>
</li>
</ul>
<h2>API Definitions for OpenRiskNet Applications and Data</h2>
<h3> Model Generation</h3>
<ul>
<!--li>
<a href="http://modelingweb.prod.openrisknet.org/">Modeling Web</a>
</li-->
<li>
<a href="https://jguweka.prod.openrisknet.org/">JGU WEKA REST Service</a>
</li>
<li>
<a href="https://api-jaqpot.prod.openrisknet.org/jaqpot/swagger/">Jaqpot Modeling and Analysis Services</a>
</li>
</ul>
<h3>Trained Models</h3>
<ul>
<li>
<a href="https://lazar.prod.openrisknet.org/">Lazar Toxicity Predictions</a>
</li>
<li>
<a href="http://cplogd.prod.openrisknet.org/">LogP Predictor</a>
</li>
<li>
<a href="http://metpred.prod.openrisknet.org/">Metabolic Site Predictor</a>
</li>
</ul>
<h3>Helper Tools</h3>
<ul>
<li>
<a href="http://chemidconvert.prod.openrisknet.org/v1/ui/">Chemical ID Converter Service</a>
</li>
</ul>
<h3>Data and Knowledge Sources</h3>
<ul>
<li>
<a href="http://bridgedb.prod.openrisknet.org/swagger/">BridgeDb identifier mapping service </a> (Includes Homo sapiens, Mus musculus, Rattus norvegicus and metabolites)
</li>
<li>
<a href="http://bridgedbfull-swagger.prod.openrisknet.org/swagger/">BridgeDb identifier mapping service </a> (Includes all BridgeDb mapping files)
</li>
<li>
<a href="http://enanomapper.github.io/API/">eNanoMapper database </a>
</li>
<li>
<a href="https://toxcast-api.cloud.douglasconnect.com/beta/ui/">ToxCast</a>
</li>
<li>
<a href="https://toxrefdb-api.cloud.douglasconnect.com/beta/ui/">ToxRefDB</a>
</li>
</ul>
<h2>Site management</h2>
<p>You will need administrative privileges to access these sites.</p>
<ul>
<li>
<a href="https://prod.openrisknet.org">OpenShift Console</a>
</li>
<li>
<a href="https://sso.prod.openrisknet.org/auth/admin">SSO Console</a>
</li>
<li>
<a href="http://registry.prod.openrisknet.org/">The OpenRiskNet Registry application</a>
</li>
</ul>
<h2>Other Resources</h2>
<ul>
<li>
<a href="https://openrisknet.freshdesk.com/support/home">Virtual Help Desk</a>
</li>
<li>
<a href="https://github.com/OpenRiskNet">Project GitHub repositories</a>
</li>
<li>
<a href="https://github.com/OpenRiskNet/landing_page">GitHub repo for this web site</a>
</li>
<li>
<a href="https://openrisknet.org/">Main OpenRiskNet web site</a>
</li>
<li>
<a href="https://openrisknet.org/e-infrastructure/services/">OpenRiskNet catalogue of services</a>
</li>
</ul>
</div>
</section>
</div>
</main>
<footer>
<div class="container">
<div class="row">
<div class="col-lg-6 offset-lg-3 col-md-8 offset-md-2">
OpenRiskNet is a 3 year project funded by the European Commission within Horizon2020 EINFRA-22-2016 Programme (Grant Agreement
731075; start date 1 December 2016).
</div>
</div>
<div class="row">
<div class="col-md-12 eu-logo">
<img src="https://openrisknet.org/static/images/eu.png">
</div>
</div>
</div>
</footer>
</body>
</html>