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CLI adaptive settings for charge change transformations #1053

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@jthorton jthorton commented Dec 13, 2024

Fixes #1000 by adding adaptive settings based on if the transformation involves a net charge change, for the default RBFE protocol only.
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🚨 API breaking changes detected! 🚨

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codecov bot commented Dec 13, 2024

Codecov Report

Attention: Patch coverage is 97.82609% with 1 line in your changes missing coverage. Please review.

Project coverage is 92.83%. Comparing base (431fad0) to head (ae232ac).
Report is 1 commits behind head on main.

Files with missing lines Patch % Lines
...ork_planner/relative_alchemical_network_planner.py 94.11% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1053      +/-   ##
==========================================
+ Coverage   92.81%   92.83%   +0.02%     
==========================================
  Files         134      135       +1     
  Lines       10003    10049      +46     
==========================================
+ Hits         9284     9329      +45     
- Misses        719      720       +1     
Flag Coverage Δ
fast-tests 92.83% <97.82%> (+0.02%) ⬆️

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🚨 API breaking changes detected! 🚨

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@atravitz atravitz left a comment

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Just a few questions/comments

openfecli/tests/commands/test_plan_rbfe_network.py Outdated Show resolved Hide resolved
openfe/utils/ligand_utils.py Outdated Show resolved Hide resolved
openfe/utils/ligand_utils.py Outdated Show resolved Hide resolved
@jthorton jthorton requested a review from atravitz December 18, 2024 10:42
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No API break detected ✅

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Support net charge params on CLI
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