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Dataset Objects

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Natalie Catlett edited this page Sep 17, 2015 · 15 revisions

This page contains information about the dataset objects defined in datasets.py

classes:

  • DataSet
    • contains any data relevant to the BEL Namespace and Annotation resource generator pipeline
    • methods
      • get_values - returns all non-obsolete values used as keys in the data dictionary
      • _str_ - returns identifying string for data object
  • OrthologyDataSet
    • contains orthology relationship data
    • parent class - DataSet
    • get_orthologs(term_id) - returns set of orthologs associated with term_id
  • NamespaceDataSet
    • contains data for BEL Namespaces and Annotations including ids, terms, synonyms, and equivalences
    • parent class - DataSet
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