Dataset Objects

This page contains information about the dataset objects defined in datasets.py

classes:

• DataSet
  • contains any data relevant to the BEL Namespace and Annotation resource generator pipeline
  • methods
    • get_values - returns all non-obsolete values used as keys in the data dictionary
    • _str_ - returns identifying string for data object
• OrthologyDataSet
  • contains orthology relationship data
  • parent class - DataSet
  • get_orthologs(term_id) - returns set of orthologs associated with term_id
• NamespaceDataSet
  • contains data for BEL Namespaces and Annotations including ids, terms, synonyms, and equivalences
  • parent class - DataSet
  • methods
    • get_label(term_id) - returns the value to be used as the preferred label for an associated term_id
    • *get_name_(term_id) - returns the term name to use as a title (or None)
    • *get_species(term_id) - returns species associated with a term_id as NCBI tax ID, or None as applicable