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bel.ttl
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bel.ttl
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prefix bel: <http://www.selventa.com/bel/>
prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#>
prefix HGNC: <http://www.selventa.com/bel/entity/hgnc-approved-symbols>
prefix MESHCL: <http://www.selventa.com/bel/entity/mesh-cellular-locations>
bel:ProteinAbundance rdfs:subClassOf bel:Abundance .
bel:ModifiedProteinAbundance rdfs:subClassOf bel:ProteinAbundance .
bel:PhosphoProteinAbundance rdfs:subClassOf bel:ModifiedProteinAbundance . # maybe
bel:PhosphoSerineProteinAbundance rdfs:subClassOf bel:PhosphoProteinAbundance . # maybe
bel:PhosphoTyrosineProteinAbundance rdfs:subClassOf bel:PhosphoProteinAbundance . # maybe
bel:PhosphoThreonineProteinAbundance rdfs:subClassOf bel:PhosphoProteinAbundance . # maybe
bel:ProteinVariantAbundance rdfs:subClassOf bel:ProteinAbundance .
bel:ComplexAbundance rdfs:subClassOf bel:Abundance .
bel:CompositeAbundance rdfs:subclassOf bel:Abundance .
bel:RNAAbundance rdfs:subClassOf bel:Abundance .
bel:GeneAbundance rdfs:subClassOf bel:Abundance .
bel:microRNAAbundance rdfs:subClassOf bel:Abundance .
bel:BiologicalProcess rdfs:subClassOf bel:Process .
bel:Pathology rdfs:subClassOf bel:BiologicalProcess .
bel:Transformation rdfs:subClassOf bel:Process .
bel:Reaction rdfs:subClassOf bel:Transformation .
bel:Translocation rdfs:subClassOf bel:Transformation .
bel:CellSecretion rdfs:subClassOf bel:Translocation . # specific translocation, does this need to be its own type?
bel:Degradation rdfs:subClassOf bel:Transformation .
bel:AbundanceActivity rdfs:subClassOf bel:Process .
bel:proteinAbundance_HGNC_AKT1_pmod_P_S_473 a bel:ModifiedProteinAbundance;
bel:ModificationType bel:Phospho-Serine ; # can use bel vocabulary or adopt external
bel:ModificationPosition "473" ;
bel:hasChild bel:proteinAbundance_HGNC_AKT1 . # problem with broader/narrower
bel:proteinAbundance_HGNC_AKT1 bel:hasConcept HGNC:AKT1 .
bel:proteinAbundance_HGNC_AKT1_pmod_P_S_473 a bel:PhosphoSerineProteinAbundance ;
bel:ModificationPosition "473".
bel:complexAbundance_proteinAbundance_MGI_Fos_proteinAbundance_MGI_Jun a bel:ComplexAbundance ;
bel:hasChild bel:proteinAbundance_MGI_Fos, bel:proteinAbundance_MGI_Jun .
bel:tscript_proteinAbundance_HGNC_TP53 a bel:AbundanceActivity ;
bel:hasChild bel:proteinAbundance_HGNC_TP53 .
bel:proteinAbundance_HGNC_TP53 bel:hasConcept HGNC:TP53 .
bel:tloc_proteinAbundance_HGNC_NFE2L2_MESHCL_Cytoplasm_MESHCL_Cell_Nucleus a bel:Translocation ;
bel:hasInput bel:proteinAbundance_HGNC_NFE2L2_MESHCL_Cytoplasm ;
bel:hasOutput bel:proteinAbundance_HGNC_NFE2L2_MESHCL_Cell_Nucleus .
bel:proteinAbundance_HGNC_NFE2L2_MESHCL_Cell_Nucleus bel:hasChild bel:proteinAbundance_HGNC_NFE2L2 ;
bel:hasLocation MESHCL:Cell_Nucleus .
bel:sec_proteinAbundance_HGNC_IL6 a bel:CellSecretion ;
bel:hasInput bel:proteinAbundance_HGNC_IL6_MESHCL_Intracellular ;
bel:hasOutput bel:proteinAbundance_HGNC_IL6_MESHCL_Extracellular .