.gitignore

# Mac-related
.DS_Store


# Output files
*.bai
*.bam
*.gz


# Configuration files
*.ini


# Directories
bak/*

bin/drafts_pipeline-GB/*
bin/drafts_pipeline-KA/*
bin/miscellaneous_learning/*
bin/miscellaneous_not-used/*

data/*
data/drivers/
data/files_bam_test/
data/files_chain/
data/files_bam_test/hg38.chrom.sizes

doc/*

log/*

results/*
results/kga0/*
!results/kga0/drivers/
results/gangliuw/*
!results/gangliuw/drivers/

src/*

src_Kris/*

tmp/*

tmp.2/*


# History files
.Rhistory
.Rapp.history


# Session Data files
.RData


# User-specific files
.Ruserdata


# Example code in package build process
*-Ex.R


# Output files from R CMD build
/*.tar.gz


# Output files from R CMD check
/*.Rcheck/


# RStudio files
.Rproj.user/


# produced vignettes
vignettes/*.html
vignettes/*.pdf


# OAuth2 token, see https://github.com/hadley/httr/releases/tag/v0.3
.httr-oauth


# knitr and R markdown default cache directories
*_cache/
/cache/


# Temporary files created by R markdown
*.utf8.md
*.knit.md


# R Environment Variables
.Renviron