Lemur Pod in K8s crashing

[ncpe20012003]

Here are the logs:
Waiting for db to become available
Attempt to connect to db.. try #1
?column?

    1

(1 row)

db ready!

Creating lemurdb...
ERROR: database "lemur" already exists
Creating the lemur user...
ERROR: role "lemur" already exists
Changing postgres password...
GRANT
Done changing postgres password...
ALTER ROLE
DONE CREATING lemurdb...
/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_sqlalchemy/init.py:814: UserWarning: Neither SQLALCHEMY_DATABASE_URI nor SQLALCHEMY_BINDS is set. Defaulting SQLALCHEMY_DATABASE_URI to "sqlite:///:memory:".
'Neither SQLALCHEMY_DATABASE_URI nor SQLALCHEMY_BINDS is set. '
[2020-01-30 05:25:52,564] WARNING in managers: Plugin 'DigiCertCISIssuerPlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
Plugin 'DigiCertCISIssuerPlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
[2020-01-30 05:25:52,564] WARNING in managers: Plugin 'DigiCertCISSourcePlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
Plugin 'DigiCertCISSourcePlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
[2020-01-30 05:25:52,564] WARNING in managers: Plugin 'DigiCertIssuerPlugin' may not work correctly. Required variable 'DIGICERT_API_KEY' is not set in Lemur's conf.
Plugin 'DigiCertIssuerPlugin' may not work correctly. Required variable 'DIGICERT_API_KEY' is not set in Lemur's conf.
Traceback (most recent call last):
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1246, in _execute_context
cursor, statement, parameters, context
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/default.py", line 581, in do_execute
cursor.execute(statement, parameters)
sqlite3.OperationalError: near "EXTENSION": syntax error

The above exception was the direct cause of the following exception:

Traceback (most recent call last):
File "manage.py", line 591, in
main()
File "manage.py", line 587, in main
manager.run()
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_script/init.py", line 417, in run
result = self.handle(argv[0], argv[1:])
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_script/init.py", line 386, in handle
res = handle(*args, **config)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_script/commands.py", line 216, in call
return self.run(*args, **kwargs)
File "manage.py", line 198, in run
create()
File "manage.py", line 148, in create
database.db.engine.execute(text("CREATE EXTENSION IF NOT EXISTS pg_trgm"))
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 2182, in execute
return connection.execute(statement, *multiparams, **params)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 982, in execute
return meth(self, multiparams, params)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/sql/elements.py", line 287, in _execute_on_connection
return connection._execute_clauseelement(self, multiparams, params)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1101, in _execute_clauseelement
distilled_params,
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1250, in _execute_context
e, statement, parameters, cursor, context
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1476, in _handle_dbapi_exception
util.raise_from_cause(sqlalchemy_exception, exc_info)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/util/compat.py", line 398, in raise_from_cause
reraise(type(exception), exception, tb=exc_tb, cause=cause)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/util/compat.py", line 152, in reraise
raise value.with_traceback(tb)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/base.py", line 1246, in _execute_context
cursor, statement, parameters, context
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/sqlalchemy/engine/default.py", line 581, in do_execute
cursor.execute(statement, parameters)
sqlalchemy.exc.OperationalError: (sqlite3.OperationalError) near "EXTENSION": syntax error
[SQL: CREATE EXTENSION IF NOT EXISTS pg_trgm]
(Background on this error at: http://sqlalche.me/e/e3q8)
/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_sqlalchemy/init.py:814: UserWarning: Neither SQLALCHEMY_DATABASE_URI nor SQLALCHEMY_BINDS is set. Defaulting SQLALCHEMY_DATABASE_URI to "sqlite:///:memory:".
'Neither SQLALCHEMY_DATABASE_URI nor SQLALCHEMY_BINDS is set. '
[2020-01-30 05:25:55,086] WARNING in managers: Plugin 'DigiCertCISIssuerPlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
Plugin 'DigiCertCISIssuerPlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
[2020-01-30 05:25:55,086] WARNING in managers: Plugin 'DigiCertCISSourcePlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
Plugin 'DigiCertCISSourcePlugin' may not work correctly. Required variable 'DIGICERT_CIS_API_KEY' is not set in Lemur's conf.
[2020-01-30 05:25:55,086] WARNING in managers: Plugin 'DigiCertIssuerPlugin' may not work correctly. Required variable 'DIGICERT_API_KEY' is not set in Lemur's conf.
Plugin 'DigiCertIssuerPlugin' may not work correctly. Required variable 'DIGICERT_API_KEY' is not set in Lemur's conf.
Traceback (most recent call last):
File "manage.py", line 591, in
main()
File "manage.py", line 587, in main
manager.run()
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_script/init.py", line 417, in run
result = self.handle(argv[0], argv[1:])
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_script/init.py", line 386, in handle
res = handle(*args, **config)
File "/usr/local/src/lemur/venv/lib/python3.6/site-packages/flask_script/commands.py", line 216, in call
return self.run(*args, **kwargs)
File "manage.py", line 425, in run
validate_conf(current_app, REQUIRED_VARIABLES)
File "/usr/local/src/lemur/lemur/common/utils.py", line 241, in validate_conf
"Required variable '{var}' is not set in Lemur's conf.".format(var=var)
lemur.exceptions.InvalidConfiguration: Required variable 'LEMUR_SECURITY_TEAM_EMAIL' is not set in Lemur's conf.

What am I missing?

[mkrelle]

Not a fix, but for comparison; under the environment below, build progresses without the SQLALCHEMY errors and successfully runs.

CentOS Linux release 7.7.1908
docker version 19.03.5, build 633a0ea
docker-compose version 1.25.4, build unknown
Modified /web/Dockerfile as per #45