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Incompatible Windows region configuration breaks FragPipe 21.0 #1381

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B0NAN opened this issue Dec 20, 2023 · 5 comments
Closed

Incompatible Windows region configuration breaks FragPipe 21.0 #1381

B0NAN opened this issue Dec 20, 2023 · 5 comments

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@B0NAN
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B0NAN commented Dec 20, 2023

log_2023-12-20_17-22-38.txt

Hi,
I updated to the latest version of fragpipe etc and after that I was not able to search for HLA peptides (open search) any more. When I reinstalled fragpipe v20 it worked again.
Please find the log attached.

Best regards,
Benedikt

@fcyu
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fcyu commented Dec 20, 2023

Same issue as #1378. Can you change the windows configuration according to #1378 (comment) and try again?

Thanks,

Fengchao

@fcyu fcyu changed the title Error running HLA peptide files Incompatible Windows region configuration breaks FragPipe 21.0 Dec 20, 2023
@fcyu
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fcyu commented Dec 21, 2023

We have also tried to fix this problem in FragPipe 21.1. Could you try that version to see if it works for you?

Thanks,

Fengchao

@B0NAN
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B0NAN commented Dec 21, 2023

Dear Fengchao,
thank you for the update. However, FragPipe 21.1 had the same error. Now I adjusted the region settings according to your suggestion in #1378 (change region settings to USA, reboot), but the problem persists.
I am sending the log attached.
log_2023-12-21_11-40-18.txt
Best regards,
Benedikt

@B0NAN
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B0NAN commented Dec 21, 2023

Hi again.
I tried again with the default HLA search settings and then it worked. So the problem might have been in the modified method that I copied from the FragPipe 20.
So for me this problem is solved. Thank you for your support!
Cheers,
Benedikt

@fcyu
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fcyu commented Dec 21, 2023

Dear Fengchao, thank you for the update. However, FragPipe 21.1 had the same error. Now I adjusted the region settings according to your suggestion in #1378 (change region settings to USA, reboot), but the problem persists. I am sending the log attached. log_2023-12-21_11-40-18.txt Best regards, Benedikt

This error is due to a different reason. And it seems that you have figured it out.

Best,

Fengchao

@fcyu fcyu closed this as completed Dec 21, 2023
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