From 99d05f50a59536eea15256ce06477d14c5b92af1 Mon Sep 17 00:00:00 2001
From: Malik <malik.hassanaly@gmail.com>
Date: Tue, 13 Feb 2024 13:53:12 -0700
Subject: [PATCH 1/2] fix spelling

---
 .codespell-ignore-words     |  3 +++
 .codespellrc                |  3 +++
 README.md                   |  6 +++---
 bird/meshing/_mesh_tools.py | 10 +++++-----
 4 files changed, 14 insertions(+), 8 deletions(-)
 create mode 100644 .codespell-ignore-words
 create mode 100644 .codespellrc

diff --git a/.codespell-ignore-words b/.codespell-ignore-words
new file mode 100644
index 00000000..42d9b5cf
--- /dev/null
+++ b/.codespell-ignore-words
@@ -0,0 +1,3 @@
+nd
+inh
+lastR
diff --git a/.codespellrc b/.codespellrc
new file mode 100644
index 00000000..d06c5471
--- /dev/null
+++ b/.codespellrc
@@ -0,0 +1,3 @@
+[codespell]
+skip = .git,OFsolvers,build,__pycache__,data_conditional_mean,Figures,assets
+ignore-words = .codespell-ignore-words
diff --git a/README.md b/README.md
index 17474491..c5823e88 100644
--- a/README.md
+++ b/README.md
@@ -29,7 +29,7 @@ python applications/write_stir_tank_mesh.py -i $inp -o $out
 
 Generates a blockMeshDict
 
-Then activate openFoam environement (tested with OpenFoam9) and mesh with
+Then activate openFoam environment (tested with OpenFoam9) and mesh with
 
 ```bash
 blockMesh -dict system/blockMeshDict
@@ -73,7 +73,7 @@ optional arguments:
 
 ```
 
-### Block cyclindrical meshing
+### Block cylindrical meshing
 
 Generates `blockMeshDict` in `system`
 
@@ -85,7 +85,7 @@ mesh_temp=bird/meshing/block_cyl_mesh_templates/sideSparger
 python applications/write_block_cyl_mesh.py -i $mesh_temp/input.json -t $mesh_temp/topology.json -o $caseFolder/system
 ```
 
-Then activate openFoam environement (tested with OpenFoam9) and mesh with
+Then activate openFoam environment (tested with OpenFoam9) and mesh with
 
 ```bash
 cd $caseFolder
diff --git a/bird/meshing/_mesh_tools.py b/bird/meshing/_mesh_tools.py
index 1be2ac86..61618b2f 100644
--- a/bird/meshing/_mesh_tools.py
+++ b/bird/meshing/_mesh_tools.py
@@ -351,12 +351,12 @@ def radialCoarsening(
     #            "ERROR: cannot smooth radial transition without grading list"
     #        )
 
-    #    Length = R[lastR] - R[lastR - 1]
-    #    deltaE = ((R[lastR - 1] - R[lastR - 2])) / NR[lastR - 1]
-    #    gradR[lastR] = 1 / (
-    #        bissection(Length / deltaE, stretch_fun, NR[lastR])
+    #    Length = R[last_R] - R[last_R - 1]
+    #    deltaE = ((R[last_R - 1] - R[last_R - 2])) / NR[last_R - 1]
+    #    gradR[last_R] = 1 / (
+    #        bissection(Length / deltaE, stretch_fun, NR[last_R])
     #    )
-    #    if (gradR[lastR] > 2 or gradR[lastR] < 0.5) and abs(
+    #    if (gradR[last_R] > 2 or gradR[last_R] < 0.5) and abs(
     #        ratio - 1
     #    ) <= 1e-12:
     #        print(

From 62da68e54104deb638dd4df5a290579634dfbf06 Mon Sep 17 00:00:00 2001
From: Malik <malik.hassanaly@gmail.com>
Date: Tue, 13 Feb 2024 13:58:17 -0700
Subject: [PATCH 2/2] enable codespell in ci

---
 .github/linters/formatting.sh | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/.github/linters/formatting.sh b/.github/linters/formatting.sh
index 624df4d5..ef284b74 100644
--- a/.github/linters/formatting.sh
+++ b/.github/linters/formatting.sh
@@ -11,7 +11,8 @@ format () {
 
         black --line-length 79 --target-version 'py310' --include  '\.pyi?$' $1
         isort --profile 'black' --multi-line 3 --trailing-comma --force-grid-wrap 0 --line-length 79 --use-parentheses $1
-    fi; 
+    fi;
+    codespell $1 
 }