From 0218abf2ae20ada7a73a49c9a86833276024c466 Mon Sep 17 00:00:00 2001 From: RussTreadon-NOAA <26926959+RussTreadon-NOAA@users.noreply.github.com> Date: Thu, 21 Nov 2024 17:29:51 -0500 Subject: [PATCH 1/5] update jcb-gdas and soca hashes (#1380) --- parm/jcb-gdas | 2 +- sorc/soca | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/parm/jcb-gdas b/parm/jcb-gdas index c41e7d7ac..77fdc329d 160000 --- a/parm/jcb-gdas +++ b/parm/jcb-gdas @@ -1 +1 @@ -Subproject commit c41e7d7aca3f4053b177709adaa66488f3643980 +Subproject commit 77fdc329d45b54529499f4033851e50e1dee0697 diff --git a/sorc/soca b/sorc/soca index 7f2ddb61b..44c4d6e53 160000 --- a/sorc/soca +++ b/sorc/soca @@ -1 +1 @@ -Subproject commit 7f2ddb61bc86796c83dfcd4801c91bffd829ffb4 +Subproject commit 44c4d6e53efa774bbaa038b0ecc4c34e3a33c9df From 9ab7994a0caf6b201613dd7e7ceae482ffa600e0 Mon Sep 17 00:00:00 2001 From: Cory Martin Date: Fri, 22 Nov 2024 08:38:54 -0500 Subject: [PATCH 2/5] Comment out rescale section for aero B (#1382) Closes #1381 This PR comments out the species dependent rescaling factor YAML section until we have the corresponding workflow changes added --- parm/aero/berror/aero_diagb.yaml.j2 | 38 ++++++++++++++--------------- 1 file changed, 19 insertions(+), 19 deletions(-) diff --git a/parm/aero/berror/aero_diagb.yaml.j2 b/parm/aero/berror/aero_diagb.yaml.j2 index a2b0ea95f..c62947f1e 100644 --- a/parm/aero/berror/aero_diagb.yaml.j2 +++ b/parm/aero/berror/aero_diagb.yaml.j2 @@ -76,25 +76,25 @@ variables: - mass_fraction_of_sea_salt003_in_air - mass_fraction_of_sea_salt004_in_air -global rescale: - geometry: - fms initialization: - namelist filename: ./fv3jedi/fmsmpp.nml - field table filename: ./fv3jedi/field_table - akbk: ./fv3jedi/akbk.nc4 - layout: - - {{ layout_x }} - - {{ layout_y }} - nxp: {{ npx_rescale }} - npy: {{ npy_rescale }} - npz: {{ npz_ges }} - field metadata override: ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml - rescale stddev: - filetype: fms restart - skip coupler file: true - dateapath: ./stddev - filename_trcr: rescale.fv_tracer.res.nc - filename_cplr: rescale.coupler.res +#global rescale: +# geometry: +# fms initialization: +# namelist filename: ./fv3jedi/fmsmpp.nml +# field table filename: ./fv3jedi/field_table +# akbk: ./fv3jedi/akbk.nc4 +# layout: +# - {{ layout_x }} +# - {{ layout_y }} +# npx: {{ npx_rescale }} +# npy: {{ npy_rescale }} +# npz: {{ npz_ges }} +# field metadata override: ./fv3jedi/fv3jedi_fieldmetadata_restart.yaml +# rescale stddev: +# filetype: fms restart +# skip coupler file: true +# dateapath: ./stddev +# filename_trcr: rescale.fv_tracer.res.nc +# filename_cplr: rescale.coupler.res number of halo points: {{ aero_diagb_n_halo }} number of neighbors: {{ aero_diagb_n_neighbors }} From 40ed1a75ea2561c0b08f468640d466d903fea5cf Mon Sep 17 00:00:00 2001 From: KatherineLukens-NOAA <59662895+KatherineLukens-NOAA@users.noreply.github.com> Date: Fri, 22 Nov 2024 15:06:10 -0500 Subject: [PATCH 3/5] Add marine verification figure display capability (HTML) (#1383) This PR adds the capability to display marine verification figures via an internal HTML document. The `README` file lists the steps one should follow to utilize the `*.html` file. The files that should be reviewed are: ``` index_vrfy_marine.html README ``` --- .../fig_gallery/marine_vrfy_display/README | 29 + .../marine_vrfy_display/default.css | 724 +++++++++++++++ .../fig_gallery/marine_vrfy_display/fonts.css | 422 +++++++++ .../index_vrfy_marine.html | 862 ++++++++++++++++++ 4 files changed, 2037 insertions(+) create mode 100644 utils/soca/fig_gallery/marine_vrfy_display/README create mode 100644 utils/soca/fig_gallery/marine_vrfy_display/default.css create mode 100644 utils/soca/fig_gallery/marine_vrfy_display/fonts.css create mode 100644 utils/soca/fig_gallery/marine_vrfy_display/index_vrfy_marine.html diff --git a/utils/soca/fig_gallery/marine_vrfy_display/README b/utils/soca/fig_gallery/marine_vrfy_display/README new file mode 100644 index 000000000..dde23647d --- /dev/null +++ b/utils/soca/fig_gallery/marine_vrfy_display/README @@ -0,0 +1,29 @@ +################################################ +# README for index_vrfy_marine.html +################################################ + +To use, follow these steps: + +---------------------------- + +1. Login to Hera via X2Go and type on the command line: + + firefox index_vrfy_marine.html + +2. In the webpage, + a. Enter the path to your main verification directory. See 2b for info on what to include in this path. + b. Are your figures in your COMROOT or from HPSS? + If COMROOT, the main path should include everything BEFORE /gdas.YearMonthDay subdirectories. + If HPSS, the main path should include everything BEFORE /YearMonthDayHour subdirectories. + Enter COMROOT or HPSS. + c. Enter the date and cycle time you wish to display. + +3. Refresh the webpage tab by clicking the refresh button. You should still see your entered path and date/time. + +4. Navigate the dropdown menu on the left and click to display figures. + +---------------------------- +NOTES: + N1: If you wish to look at figures from a different experiment or for a different date/time, repeat Steps 2-4. + +################################################ diff --git a/utils/soca/fig_gallery/marine_vrfy_display/default.css b/utils/soca/fig_gallery/marine_vrfy_display/default.css new file mode 100644 index 000000000..9eee9a476 --- /dev/null +++ b/utils/soca/fig_gallery/marine_vrfy_display/default.css @@ -0,0 +1,724 @@ + html, body + { + height: 100%; + } + + body + { + margin: 0px; + padding: 0px; + background: #202020; + font-family: 'Source Sans Pro', sans-serif; + font-size: 12pt; + font-weight: 300; + color: #444444; + } + + + h1, h2, h3 + { + margin: 0; + padding: 0; + font-weight: 600; + color: #333333; + } + + p, ol, ul + { + margin-top: 0; + } + + ol, ul + { + padding: 0; + list-style: none; + } + + p + { + line-height: 180%; + } + + strong + { + } + + a + { + color: #2980b9; + } + + a:hover + { + text-decoration: none; + } + + .container + { + overflow: hidden; + margin: 0em auto; + width: 1350px; + } + +/*********************************************************************************/ +/* Image Style */ +/*********************************************************************************/ + + .image + { + display: inline-block; + } + + .image img + { + display: block; + width: 100%; + } + + .image-full + { + display: block; + width: 100%; + margin: 0 0 2em 0; + } + + .image-left + { + float: left; + margin: 0 2em 2em 0; + } + + .image-centered + { + display: block; + margin: 0 0 2em 0; + } + + .image-centered img + { + margin: 0 auto; + width: auto; + } + +/*********************************************************************************/ +/* List Styles */ +/*********************************************************************************/ + + ul.style1 + { + margin: 0 auto; + padding: 0; + width: 80%; + overflow: hidden; + list-style: none; + text-align: left; + color: #6c6c6c + } + + ul.style1 li + { + padding: 1.6em 0em 0em 0em; + margin: 0 0 2.5em 0; + border-top: 1px solid rgba(0,0,0,.1); + } + + ul.style1 li:first-child + { + border-top: none; + } + + ul.style1 p + { + margin: 0; + } + + ul.style1 a + { + display: block; + text-decoration: none; + color: #2D2D2D; + } + + ul.style1 a:hover + { + text-decoration: underline; + } + + ul.style1 h3 + { + padding: 1em 0em 5px 0em; + text-transform: uppercase; + font-size: 1em; + font-weight: 400; + } + + ul.style1 .first + { + padding-top: 0; + background: none; + } + + ul.style1 .date + { + float: left; + position: relative; + width: 80px; + height: 70px; + margin: 0.5em 1.5em 0em 0.5em; + padding: 1.5em 0em 1.5em 0em; + box-shadow: 0px 0px 0px 5px rgba(255,255,255,0.1); + line-height: normal; + text-align: center; + text-transform: uppercase; + text-shadow: 0px 1px 0px rgba(0,0,0,.2); + font-size: 1em; + font-weight: 400; + border-right: 1px solid rgba(0,0,0,.1); + } + + ul.style1 .date:after + { + content: ''; + display: block; + position: absolute; + left: 0; + top: 0; + width: 100%; + height: 100%; + border-radius: 6px; + } + + ul.style1 .date b + { + margin: 0; + padding: 0; + display: block; + margin-top: -5px; + font-size: 1.8em; + font-weight: 700; + } + + ul.style1 .date a + { + } + + ul.style1 .date a:hover + { + text-decoration: none; + } + + +/*********************************************************************************/ +/* Social Icon Styles */ +/*********************************************************************************/ + + ul.contact + { + margin: 0; + padding: 2em 0em 0em 0em; + list-style: none; + } + + ul.contact li + { + display: inline-block; + padding: 0em 0.30em; + font-size: 1em; + } + + ul.contact li span + { + display: none; + margin: 0; + padding: 0; + } + + ul.contact li a + { + color: #FFF; + } + + ul.contact li a:before + { + display: inline-block; + background: #3f3f3f; + width: 40px; + height: 40px; + line-height: 40px; + border-radius: 20px; + text-align: center; + color: #FFFFFF; + } + + ul.contact li a.icon-twitter:before { background: #2DAAE4; } + ul.contact li a.icon-facebook:before { background: #39599F; } + ul.contact li a.icon-dribbble:before { background: #C4376B; } + ul.contact li a.icon-tumblr:before { background: #31516A; } + ul.contact li a.icon-rss:before { background: #F2600B; } + +/*********************************************************************************/ +/* Button Style */ +/*********************************************************************************/ + + .button + { + display: inline-block; + padding: 1em 3em 1em 2em; + letter-spacing: 0.20em; + text-decoration: none; + text-transform: uppercase; + font-weight: 400; + font-size: 0.90em; + color: #FFF; + } + + .button:before + { + display: inline-block; + background: #FFC31F; + margin-right: 1em; + width: 40px; + height: 40px; + line-height: 40px; + border-radius: 20px; + text-align: center; + color: #272925; + } + +/*********************************************************************************/ +/* 4-column */ +/*********************************************************************************/ + + .box1, + .box2, + .box3, + .box4 + { + width: 235px; + } + + .box1, + .box2, + .box3, + { + float: left; + margin-right: 20px; + } + + .box4 + { + float: right; + } + +/*********************************************************************************/ +/* 3-column */ +/*********************************************************************************/ + + .boxA, + .boxB, + .boxC + { + width: 320px; + } + + .boxA, + .boxB, + { + float: left; + margin-right: 20px; + } + + .boxC + { + float: right; + } + +/*********************************************************************************/ +/* 2-column */ +/*********************************************************************************/ + + .tbox1, + .tbox2 + { + width: 575px; + } + + .tbox1 + { + float: left; + } + + .tbox2 + { + float: right; + } + +/*********************************************************************************/ +/* Heading Titles */ +/*********************************************************************************/ + + .title + { + margin-bottom: 3em; + } + + .title h2 + { + text-transform: lowercase; + font-size: 2.8em; + } + + .title .byline + { + font-size: 1.3em; + color: #6F6F6F; + } + +/*********************************************************************************/ +/* Header */ +/*********************************************************************************/ + + #header + { + position: relative; + float: left; + width: 225px; + padding: 3em 0em; + } + +/*********************************************************************************/ +/* Logo */ +/*********************************************************************************/ + + #logo + { + text-align: center; + margin-bottom: 4em; + } + + #logo h1 + { + display: block; + } + + #logo a + { + text-decoration: none; + color: #FFF; + } + + #logo span + { + padding-right: 0.5em; + text-transform: uppercase; + font-size: 0.90em; + color: rgba(255,255,255,0.3); + } + + #logo span a + { + color: rgba(255,255,255,0.5); + } + + #logo img + { + display: inline-block; + margin-bottom: 1em; + border-radius: 50%; + } + +/*********************************************************************************/ +/* Menu */ +/*********************************************************************************/ + + #menu + { + } + + #menu ul + { + } + + #menu li + { + border-top: 1px solid rgba(255,255,255,0.4); + } + + #menu li a, #menu li span + { + display: block; + padding: 1em 1em; + text-align: center; + text-decoration: none; + text-transform: uppercase; + font-weight: 700; + color: rgba(255,255,255,1); + } + + #menu ul li a:hover { + background-color: #2980b9; + border-left: solid 10px #ffffff; + } + + #menu li:hover a, #menu li.active a, #menu li.active span + { + } + + #menu .current_page_item a + { + background: #2980b9; + color: rgba(255,255,255,1); + } + + #menu .icon + { + } + +/*********************************************************************************/ +/* Dropdown */ +/*********************************************************************************/ + .dropbtn { + position: relative; + display: block; + padding: 1em 1em; + width: 100%; + text-align: center; + text-decoration: none; + text-transform: uppercase; + font-family: 'Source Sans Pro', sans-serif; + font-size: 12pt; + font-weight: 700; + color: rgba(255,255,255,1); + background-color: #112e51; + border-top: 1px solid rgba(255,255,255,0.4); + border-left: none; + border-bottom: none; + border-right: none; + cursor: pointer; + } + + #active { + background-color: #2980b9; + color: rgba(255,255,255,1); + } + + .dropbtn:hover { + background-color: #2980b9; + border-left: solid 10px #ffffff; + } + + .dropbtn:focus { + background-color: #2980b9; + border-left: solid 10px #ffffff; + + } + + .dropdown { + position: relative; + display: block; + width: 100%; + } + + /* NESTED DROPDOWNS */ + /* The dropdown content (submenus) */ + .dropdown-content { + display: none; + left: 100%; + top: -50%; + position: absolute; + background-color: #112e51; + min-width: 160px; + z-index: 1; + } + + /*.dropdown-content a { + display: block; + color: rgba(255,255,255,1); + padding: 1em 1em; + border: 1px solid rgba(255,255,255,0.4); + text-align: center; + text-decoration: none; + } + + /* Show the dropdown menu on hover */ + .dropdown:hover .dropdown-content { + display: block; + } + + /* Style for submenu items */ + .dropdown-content div { + padding: 10px; + color: white; + cursor: pointer; + } + + .dropdown-content div:hover { + background-color: #575757; + } + + /* Style for deeper nested dropdown */ + .dropdown-content .dropdown-content { + top: -75%; + left: 100%; + display: none; + position: absolute; + } + + /* Show deeper nested dropdown when hovered over */ + .dropdown-content div:hover .dropdown-content { + display: block; + } + + /* Display dropdown menu when hovering over a parent menu */ + div:hover > .dropdown-menu { + display: block; + } + + /* Style for nested dropdowns */ + /* Ensure only one level of dropdown is visible at a time */ + div > .dropdown-menu > div { + position: relative; + } + + /* Hide the submenus by default */ + .dropdown-menu > .dropdown-menu { + display: none; + left: 100%; /* Position submenu to the right */ + top: 5; + position: absolute; + } + + /* Show only the submenu when hovering over the parent */ + div > .dropdown-menu > div:hover > .dropdown-menu { + display: block; + } + + /* END NESTED DROPDOWNS */ + + .show {display: block;} + +/*********************************************************************************/ +/* Banner */ +/*********************************************************************************/ + + #banner + { + margin-bottom: 0em; + } + +/*********************************************************************************/ +/* Page */ +/*********************************************************************************/ + + #page + { + background: #112e51; +/* background: #2a2a2a; */ + } + +/*********************************************************************************/ +/* Main */ +/*********************************************************************************/ + + #main + { + overflow: hidden; + float: right; + width: 1125px; + padding: 1em 0px 5em 0px; + background: #FFF; + border-top: 6px solid #2980b9; + text-align: center; + } + +/*********************************************************************************/ +/* Featured */ +/*********************************************************************************/ + + #featured + { + overflow: hidden; + margin-bottom: 3em; + padding-top: 5em; + border-top: 1px solid rgba(0,0,0,0.08); + } + +/*********************************************************************************/ +/* Sidebar */ +/*********************************************************************************/ + + #sidebar + { + } + +/*********************************************************************************/ +/* Footer */ +/*********************************************************************************/ + + #footer + { + overflow: hidden; + padding: 0em 0em; + border-top: 1px solid rgba(0,0,0,0.08); + font-weight: bolder; + } + +/*********************************************************************************/ +/* Welcome */ +/*********************************************************************************/ + + #welcome + { + overflow: hidden; + padding: 0em 1em; + border-top: 1px solid rgba(0,0,0,0.08); + font-weight: bolder; + } + +/*********************************************************************************/ +/* Contact */ +/*********************************************************************************/ + + #contact + { + overflow: hidden; + padding: 0em 0em; + border-top: 1px solid rgba(0,0,0,0.08); + font-weight: bolder; + } + +/*********************************************************************************/ +/* Copyright */ +/*********************************************************************************/ + + #copyright + { + overflow: hidden; + padding: 1em 0em; + border-top: 1px solid rgba(0,0,0,0.08); + } + + #copyright span + { + display: block; + letter-spacing: 0.20em; + line-height: 2.5em; + text-align: center; + text-transform: uppercase; + font-size: 0.8em; + font-weight: normal; + color: rgba(0,0,0,0.7); + } + + #copyright a + { + text-decoration: none; + color: rgba(0,0,0,0.9); + } + + .fa + { + display: block; + color: #000; + background: red; + } diff --git a/utils/soca/fig_gallery/marine_vrfy_display/fonts.css b/utils/soca/fig_gallery/marine_vrfy_display/fonts.css new file mode 100644 index 000000000..f90cc4360 --- /dev/null +++ b/utils/soca/fig_gallery/marine_vrfy_display/fonts.css @@ -0,0 +1,422 @@ +@charset 'UTF-8'; + +@font-face{font-family:'FontAwesome';src:url('font/fontawesome-webfont.eot?v=4.0.1');src:url('font/fontawesome-webfont.eot?#iefix&v=4.0.1') format('embedded-opentype'),url('font/fontawesome-webfont.woff?v=4.0.1') format('woff'),url('font/fontawesome-webfont.ttf?v=4.0.1') format('truetype'),url('font/fontawesome-webfont.svg?v=4.0.1#fontawesomeregular') format('svg');font-weight:normal;font-style:normal} + +/*********************************************************************************/ +/* Icons */ +/* Powered by Font Awesome by Dave Gandy | http://fontawesome.io */ +/* Licensed under the SIL OFL 1.1 (font), MIT (CSS) */ +/*********************************************************************************/ + + .fa + { + text-decoration: none; + } + + .fa:before + { + display:inline-block; + font-family: FontAwesome; + font-size: 1.25em; + text-decoration: none; + font-style: normal; + font-weight: normal; + line-height: 1; + -webkit-font-smoothing:antialiased; + -moz-osx-font-smoothing:grayscale; + } + + .fa-lg{font-size:1.3333333333333333em;line-height:.75em;vertical-align:-15%} + .fa-2x{font-size:2em} + .fa-3x{font-size:3em} + .fa-4x{font-size:4em} + .fa-5x{font-size:5em} + .fa-fw{width:1.2857142857142858em;text-align:center} + .fa-ul{padding-left:0;margin-left:2.142857142857143em;list-style-type:none}.fa-ul>li{position:relative} + .fa-li{position:absolute;left:-2.142857142857143em;width:2.142857142857143em;top:.14285714285714285em;text-align:center}.fa-li.fa-lg{left:-1.8571428571428572em} + .fa-border{padding:.2em .25em .15em;border:solid .08em #eee;border-radius:.1em} + .pull-right{float:right} + .pull-left{float:left} + .fa.pull-left{margin-right:.3em} + .fa.pull-right{margin-left:.3em} + .fa-spin{-webkit-animation:spin 2s infinite linear;-moz-animation:spin 2s infinite linear;-o-animation:spin 2s infinite linear;animation:spin 2s infinite linear} + @-moz-keyframes spin{0%{-moz-transform:rotate(0deg)} 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100644 index 000000000..31372866c --- /dev/null +++ b/utils/soca/fig_gallery/marine_vrfy_display/index_vrfy_marine.html @@ -0,0 +1,862 @@ + + + + + +GFS Experiment Verification + + + + + + + + + + + + +
+ +
+

Marine Figures

+

Add path to main verification directory:

+
+ + + +
+

Are the figures in your COMROOT or from HPSS? For example:

+ If COMROOT, the MAIN path should include everything before /gdas.YearMonthDay subdirectories. +
+ If HPSS, the MAIN path should include everything before /YearMonthDayHour subdirectories. +
+ + + +
+ +

Choose a date and cycle time:

+ + +
+ + + +
+
+ + + +
+
+ + + +
+
+ + + +
+ + +
+ + +
+ + + +
+

This page displays verification for the Global Forecast System (GFS) developer experiments.

+

DISCLAIMER: This web page is not "operational" and therefore not subject to 24-hr monitoring by NCEP's Central Operations staff.

+
+ +
+


CONTACT INFORMATION +

+ + + + + + + + +
+ +
+ + From 7a01c5eb323fd14187ebe002f026f0e0115f5973 Mon Sep 17 00:00:00 2001 From: DavidNew-NOAA <134300700+DavidNew-NOAA@users.noreply.github.com> Date: Mon, 25 Nov 2024 18:35:13 -0500 Subject: [PATCH 4/5] Add more CI to GW-CI (#1365) This PR is a companion to GW PR [#3120](https://github.com/NOAA-EMC/global-workflow/pull/3120). It does a couple things: 1. 5 GW CI tests are added/extended as CTests in GDASApp, running through to the fcst jobs in the first full-cycle. These CI tests are: ```C96C48_hybatmDA```, ```C96C48_ufs_hybatmDA```, ```C96C48_hybatmaerosnowDA```, ```C48mx500_3DVarAOWCDA```, and ```C48mx500_hybAOWCDA```. 2. Test references are added for ```C96C48_ufs_hybatmDA``` and ```C48mx500_3DVarAOWCDA```, so that we're actually testing the output. 3. These CTests are turned on by default in a workflow build, rather than having to mess with the ```CMakeCache.txt``` file and re-running make. This will allow us to use these tests in nightly testing. 4. ```test/gw-ci/CMakeLists.txt``` is refactored quite a bit. 5. There are 89 CTests, but for 5 CI tests, but I added task dependencies, so they can be run in parallel. The primary motivation for this PR is that we can run CI for our nightly testing of GDASApp. Also, anyone with a PR can easily do CI testing through CTests. --------- Co-authored-by: Russ-Treadon-NOAA --- ci/hera.sh | 1 + ci/orion.sh | 1 + ci/run_ci.sh | 2 +- ci/run_gw_ci.sh | 2 +- parm/atm/jcb-base.yaml.j2 | 5 + parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 | 10 + parm/atm/jcb-prototype_3dvar.yaml.j2 | 7 + parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 | 10 + parm/atm/jcb-prototype_lgetkf.yaml.j2 | 7 + .../atm/jcb-prototype_lgetkf_observer.yaml.j2 | 7 + parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 | 7 + parm/jcb-algorithms | 2 +- parm/soca/marine-jcb-3dfgat.yaml.j2 | 7 + parm/soca/marine-jcb-base.yaml | 4 + test/CMakeLists.txt | 7 - test/atm/global-workflow/CMakeLists.txt | 139 +++--- test/atm/global-workflow/config.yaml | 3 + .../jcb-prototype_3dvar-fv3inc.yaml.j2 | 10 + .../jcb-prototype_3dvar.yaml.j2 | 4 +- .../jcb-prototype_lgetkf-fv3inc.yaml.j2 | 10 + .../jcb-prototype_lgetkf.yaml.j2 | 4 +- .../jcb-prototype_lgetkf_observer.yaml.j2 | 4 +- .../jcb-prototype_lgetkf_solver.yaml.j2 | 4 +- test/fv3jedi/CMakeLists.txt | 23 - .../testinput/gdasapp_fv3jedi_fv3inc.yaml | 65 --- .../testoutput/gdasapp_fv3jedi_fv3inc.ref | 41 -- test/gw-ci/CMakeLists.txt | 453 ++++++++++++++---- test/gw-ci/run_exp.sh | 54 ++- .../C48mx500_3DVarAOWCDA_3dfgat.ref | 54 +++ .../C96C48_ufs_hybatmDA_3dvar-fv3inc.ref | 41 ++ .../C96C48_ufs_hybatmDA_3dvar.ref | 124 +++++ .../C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref | 82 ++++ .../C96C48_ufs_hybatmDA_lgetkf_observer.ref | 126 +++++ .../C96C48_ufs_hybatmDA_lgetkf_solver.ref | 180 +++++++ test/testreference/atm_jjob_3dvar-fv3inc.ref | 41 ++ .../atm_jjob_3dvar.ref} | 0 test/testreference/atm_jjob_lgetkf-fv3inc.ref | 123 +++++ .../atm_jjob_lgetkf.ref} | 0 .../atm_jjob_lgetkf_observer.ref} | 0 .../atm_jjob_lgetkf_solver.ref} | 0 ush/CMakeLists.txt | 1 - ush/jediinc2fv3.py | 187 -------- utils/fv3jedi/fv3jedi_fv3inc.h | 22 +- 43 files changed, 1369 insertions(+), 505 deletions(-) create mode 100644 parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 create mode 100644 parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 create mode 100644 test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 create mode 100644 test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 delete mode 100644 test/fv3jedi/CMakeLists.txt delete mode 100644 test/fv3jedi/testinput/gdasapp_fv3jedi_fv3inc.yaml delete mode 100644 test/fv3jedi/testoutput/gdasapp_fv3jedi_fv3inc.ref create mode 100644 test/testreference/C48mx500_3DVarAOWCDA_3dfgat.ref create mode 100644 test/testreference/C96C48_ufs_hybatmDA_3dvar-fv3inc.ref create mode 100644 test/testreference/C96C48_ufs_hybatmDA_3dvar.ref create mode 100644 test/testreference/C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref create mode 100644 test/testreference/C96C48_ufs_hybatmDA_lgetkf_observer.ref create mode 100644 test/testreference/C96C48_ufs_hybatmDA_lgetkf_solver.ref create mode 100644 test/testreference/atm_jjob_3dvar-fv3inc.ref rename test/{atm/global-workflow/3dvar.ref => testreference/atm_jjob_3dvar.ref} (100%) create mode 100644 test/testreference/atm_jjob_lgetkf-fv3inc.ref rename test/{atm/global-workflow/lgetkf.ref => testreference/atm_jjob_lgetkf.ref} (100%) rename test/{atm/global-workflow/lgetkf_observer.ref => testreference/atm_jjob_lgetkf_observer.ref} (100%) rename test/{atm/global-workflow/lgetkf_solver.ref => testreference/atm_jjob_lgetkf_solver.ref} (100%) delete mode 100755 ush/jediinc2fv3.py diff --git a/ci/hera.sh b/ci/hera.sh index ec3858370..8a9518f8b 100644 --- a/ci/hera.sh +++ b/ci/hera.sh @@ -6,3 +6,4 @@ export SALLOC_ACCOUNT=$SLURM_ACCOUNT export SBATCH_ACCOUNT=$SLURM_ACCOUNT export SLURM_QOS=debug export PATH=$PATH:/home/role.jedipara/bin +export NTASKS_TESTS=12 diff --git a/ci/orion.sh b/ci/orion.sh index 1232d2828..8c2cf9a5f 100644 --- a/ci/orion.sh +++ b/ci/orion.sh @@ -8,3 +8,4 @@ export SLURM_QOS=debug export SLURM_EXCLUSIVE=user export OMP_NUM_THREADS=1 ulimit -s unlimited +export NTASKS_TESTS=12 diff --git a/ci/run_ci.sh b/ci/run_ci.sh index 1b5f27231..917f70e90 100755 --- a/ci/run_ci.sh +++ b/ci/run_ci.sh @@ -61,7 +61,7 @@ module use $GDAS_MODULE_USE module load GDAS/$TARGET echo "---------------------------------------------------" >> $outfile rm -rf log.ctest -ctest -R gdasapp --output-on-failure &>> log.ctest +ctest -j${NTASKS_TESTS} -R gdasapp --output-on-failure &>> log.ctest ctest_status=$? npassed=$(cat log.ctest | grep "tests passed") if [ $ctest_status -eq 0 ]; then diff --git a/ci/run_gw_ci.sh b/ci/run_gw_ci.sh index ba1874107..d3b7de9d0 100755 --- a/ci/run_gw_ci.sh +++ b/ci/run_gw_ci.sh @@ -62,7 +62,7 @@ module use $repodir/sorc/gdas.cd/modulefiles module load GDAS/$TARGET echo "---------------------------------------------------" >> $outfile rm -rf log.ctest -ctest -R gdasapp --output-on-failure &>> log.ctest +ctest -j${NTASKS_TESTS} -R gdasapp --output-on-failure &>> log.ctest ctest_status=$? npassed=$(cat log.ctest | grep "tests passed") if [ $ctest_status -eq 0 ]; then diff --git a/parm/atm/jcb-base.yaml.j2 b/parm/atm/jcb-base.yaml.j2 index d7e1e5907..39c626a84 100644 --- a/parm/atm/jcb-base.yaml.j2 +++ b/parm/atm/jcb-base.yaml.j2 @@ -27,6 +27,11 @@ final_prints_frequency: PT3H number_of_outer_loops: 2 analysis_variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] +# Testing +# ------- + +do_testing: {{ DO_TEST_MODE | default(false, true) }} + # Model things # ------------ # Geometry diff --git a/parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 b/parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 new file mode 100644 index 000000000..f7f6db57a --- /dev/null +++ b/parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 @@ -0,0 +1,10 @@ +# Algorithm +# --------- +algorithm: fv3jedi_fv3inc_variational + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_3dvar-fv3inc.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_3dvar-fv3inc.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/parm/atm/jcb-prototype_3dvar.yaml.j2 b/parm/atm/jcb-prototype_3dvar.yaml.j2 index 4330a87bd..b89b65105 100644 --- a/parm/atm/jcb-prototype_3dvar.yaml.j2 +++ b/parm/atm/jcb-prototype_3dvar.yaml.j2 @@ -30,3 +30,10 @@ observations: # - scatwind_ascat_metop-a # - snowcvr # - abi_g16 + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_3dvar.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_3dvar.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 b/parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 new file mode 100644 index 000000000..9845103df --- /dev/null +++ b/parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 @@ -0,0 +1,10 @@ +# Algorithm +# --------- +algorithm: fv3jedi_fv3inc_lgetkf + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf-fv3inc.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/parm/atm/jcb-prototype_lgetkf.yaml.j2 b/parm/atm/jcb-prototype_lgetkf.yaml.j2 index 2ed04df3b..04f9faafd 100644 --- a/parm/atm/jcb-prototype_lgetkf.yaml.j2 +++ b/parm/atm/jcb-prototype_lgetkf.yaml.j2 @@ -38,3 +38,10 @@ observations: - satwnd.viirs_npp # - scatwind_ascat_metop-a # - snowcvr + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 b/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 index 4b800ac8f..39e682415 100644 --- a/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 +++ b/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 @@ -44,3 +44,10 @@ atmosphere_obsdataout_prefix: diag_lobs_ # Distribution type distribution_type: RoundRobin + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf_observer.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf_observer.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 b/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 index b5123dde9..7abccdd6e 100644 --- a/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 +++ b/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 @@ -47,3 +47,10 @@ atmosphere_obsdataout_prefix: diag_solv_ # Distribution type distribution_type: Halo + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf_solver.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf_solver.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/parm/jcb-algorithms b/parm/jcb-algorithms index 43d8ff6ba..0f4423943 160000 --- a/parm/jcb-algorithms +++ b/parm/jcb-algorithms @@ -1 +1 @@ -Subproject commit 43d8ff6ba14baf9402ee58d0f3351a143c21211b +Subproject commit 0f4423943e1c2bdd4b9d0a4218e30df83c5e2c66 diff --git a/parm/soca/marine-jcb-3dfgat.yaml.j2 b/parm/soca/marine-jcb-3dfgat.yaml.j2 index acdfa002d..59d0b9ff5 100644 --- a/parm/soca/marine-jcb-3dfgat.yaml.j2 +++ b/parm/soca/marine-jcb-3dfgat.yaml.j2 @@ -3,3 +3,10 @@ algorithm: 3dfgat # Observations observations: !INC ${OBS_LIST_SHORT} + +# Testing things +# -------------- +test_reference_filename: '{{HOMEgfs}}/sorc/gdas.cd/test/testreference/C48mx500_3DVarAOWCDA_3dfgat.ref' +test_output_filename: '{{HOMEgfs}}/sorc/gdas.cd/build/gdas/test/testoutput/C48mx500_3DVarAOWCDA_3dfgat.test.out' +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/parm/soca/marine-jcb-base.yaml b/parm/soca/marine-jcb-base.yaml index 3a9d40223..1b55dc7d2 100644 --- a/parm/soca/marine-jcb-base.yaml +++ b/parm/soca/marine-jcb-base.yaml @@ -26,6 +26,10 @@ final_prints_frequency: PT3H number_of_outer_loops: 1 analysis_variables: [sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness, sea_water_salinity, sea_water_potential_temperature, eastward_sea_water_velocity, northward_sea_water_velocity, sea_surface_height_above_geoid] +# Testing +# ------- + +do_testing: '{{ DO_TEST_MODE | default(false, true) }}' # Model things # ------------ diff --git a/test/CMakeLists.txt b/test/CMakeLists.txt index cae0d55ec..a31f5443e 100644 --- a/test/CMakeLists.txt +++ b/test/CMakeLists.txt @@ -24,7 +24,6 @@ file(ARCHIVE_EXTRACT INPUT ${CMAKE_CURRENT_BINARY_DIR}/${TAR} DESTINATION ${CMAKE_CURRENT_BINARY_DIR}) # list of test binary/data files to install list(APPEND test_data - ${CMAKE_CURRENT_BINARY_DIR}/testdata/atminc_compress.nc4 ${CMAKE_CURRENT_BINARY_DIR}/testdata/adt.nc ${CMAKE_CURRENT_BINARY_DIR}/testdata/sst.nc ${CMAKE_CURRENT_BINARY_DIR}/testdata/sss.nc @@ -120,11 +119,6 @@ add_test(NAME test_gdasapp_check_yaml_keys # WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/) # commented out above test because it does not really do as advertised with all these templates which are not valid yaml -# test for ush/jediinc2fv3.py -add_test(NAME test_gdasapp_jedi_increment_to_fv3 - COMMAND ${Python3_EXECUTABLE} ${PROJECT_SOURCE_DIR}/ush/jediinc2fv3.py ${PROJECT_BINARY_DIR}/test/testdata/atmges_compress.nc4 ${PROJECT_BINARY_DIR}/test/testdata/atminc_compress.nc4 ${PROJECT_BINARY_DIR}/test/testoutput/fv_increment.nc - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/) - # high level tests that require the global-workflow # TODO(AFE) see GDASApp issue #1213 #if (WORKFLOW_TESTS) @@ -136,7 +130,6 @@ add_test(NAME test_gdasapp_jedi_increment_to_fv3 #endif() if (${BUILD_GDASBUNDLE}) - add_subdirectory(fv3jedi) # fv3jedi tests add_subdirectory(snow) # snow da tests add_subdirectory(gw-ci) # subset of the global-workflow ci tests endif() diff --git a/test/atm/global-workflow/CMakeLists.txt b/test/atm/global-workflow/CMakeLists.txt index 925a73677..daa5b8edf 100644 --- a/test/atm/global-workflow/CMakeLists.txt +++ b/test/atm/global-workflow/CMakeLists.txt @@ -1,63 +1,86 @@ # test for creating an experiment directory within the global-workflow file(MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) -add_test(NAME test_gdasapp_setup_atm_cycled_exp - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/setup_workflow_exp.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_var_init - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_init.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_var_run - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_run.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_var_inc - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_inc.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_var_final - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_final.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_ens_init - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_ens_letkf - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_letkf.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_ens_init_split - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init_split.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_ens_obs - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_obs.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_ens_sol - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_sol.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) +ecbuild_add_test(TARGET test_gdasapp_setup_atm_cycled_exp + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/setup_workflow_exp.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_init + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_init.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_setup_atm_cycled_exp) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_run + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_run.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_var_init) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_inc + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_inc.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_var_run) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_var_final + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_var_final.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_var_inc) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_init + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_setup_atm_cycled_exp) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_letkf + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_letkf.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_ens_init) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_init_split + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_init_split.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_ens_letkf) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_obs + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_obs.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_ens_init_split) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_sol + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_sol.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_ens_obs) -add_test(NAME test_gdasapp_atm_jjob_ens_inc - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_inc.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) - -add_test(NAME test_gdasapp_atm_jjob_ens_final - COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_final.sh - ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun) +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_inc + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_inc.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_ens_sol) + +ecbuild_add_test(TARGET test_gdasapp_atm_jjob_ens_final + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/atm/global-workflow/jjob_ens_final.sh + ARGS ${PROJECT_BINARY_DIR} ${PROJECT_SOURCE_DIR} + WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/atm/global-workflow/testrun + TEST_DEPENDS test_gdasapp_atm_jjob_ens_inc) diff --git a/test/atm/global-workflow/config.yaml b/test/atm/global-workflow/config.yaml index d8bf2e4c2..d6d4b0343 100644 --- a/test/atm/global-workflow/config.yaml +++ b/test/atm/global-workflow/config.yaml @@ -8,9 +8,11 @@ base: DUMPDIR: "@dumpdir@" STMP: "@bindir@/test/atm/global-workflow/testrun" PTMP: "@bindir@/test/atm/global-workflow/testrun" + DO_TEST_MODE: "YES" atmanl: JCB_ALGO_YAML_VAR: "@srcdir@/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2" + JCB_ALGO_YAML_FV3INC: "@srcdir@/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2" STATICB_TYPE: "identity" ATMRES_ANL: "C48" LAYOUT_X_ATMANL: 1 @@ -20,5 +22,6 @@ atmensanl: JCB_ALGO_YAML_LETKF: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2" JCB_ALGO_YAML_OBS: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2" JCB_ALGO_YAML_SOL: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2" + JCB_ALGO_YAML_FV3INC: "@srcdir@/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2" LAYOUT_X_ATMENSANL: 1 LAYOUT_Y_ATMENSANL: 1 diff --git a/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 b/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 new file mode 100644 index 000000000..9686fbbce --- /dev/null +++ b/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 @@ -0,0 +1,10 @@ +# Algorithm +# --------- +algorithm: fv3jedi_fv3inc_variational + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_3dvar-fv3inc.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_3dvar-fv3inc.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 b/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 index e16f86ecc..7465a4274 100644 --- a/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 @@ -17,7 +17,7 @@ atmosphere_obsdatain_suffix: ".{{ current_cycle | to_YMDH }}.nc" # Testing things # -------------- -test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/3dvar.ref -test_output_filename: ./3dvar.out +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_3dvar.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_3dvar.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 new file mode 100644 index 000000000..cd11e771d --- /dev/null +++ b/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 @@ -0,0 +1,10 @@ +# Algorithm +# --------- +algorithm: fv3jedi_fv3inc_lgetkf + +# Testing things +# -------------- +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf-fv3inc.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf-fv3inc.test.out +test_float_relative_tolerance: 1.0e-3 +test_float_absolute_tolerance: 1.0e-5 diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 index b83b7d695..e6b1f9593 100644 --- a/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 @@ -22,7 +22,7 @@ atmosphere_obsdatain_suffix: ".{{ current_cycle | to_YMDH }}.nc" # Testing things # -------------- -test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/lgetkf.ref -test_output_filename: ./lgetkf.out +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 index ec1182019..ac0fcd7dd 100644 --- a/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 @@ -28,7 +28,7 @@ distribution_type: RoundRobin # Testing things # -------------- -test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/lgetkf_observer.ref -test_output_filename: ./lgetkf_observer.out +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf_observer.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf_observer.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 index a6ad34751..2c3bd2aae 100644 --- a/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 @@ -28,7 +28,7 @@ distribution_type: Halo # Testing things # -------------- -test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/atm/global-workflow/lgetkf_solver.ref -test_output_filename: ./lgetkf_solver.out +test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf_solver.ref +test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf_solver.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 diff --git a/test/fv3jedi/CMakeLists.txt b/test/fv3jedi/CMakeLists.txt deleted file mode 100644 index 9b75510b9..000000000 --- a/test/fv3jedi/CMakeLists.txt +++ /dev/null @@ -1,23 +0,0 @@ -# Subdirectories -file(MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/test/fv3jedi/testinput) -file(MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/test/fv3jedi/testoutput) -file(MAKE_DIRECTORY ${PROJECT_BINARY_DIR}/test/fv3jedi/fv3jedi) - -# Test YAMLs -file(CREATE_LINK ${PROJECT_SOURCE_DIR}/test/fv3jedi/testinput/gdasapp_fv3jedi_fv3inc.yaml ${PROJECT_BINARY_DIR}/test/fv3jedi/testinput/gdasapp_fv3jedi_fv3inc.yaml SYMBOLIC) - -# Test reference files -file(CREATE_LINK ${PROJECT_SOURCE_DIR}/test/fv3jedi/testoutput/gdasapp_fv3jedi_fv3inc.ref ${PROJECT_BINARY_DIR}/test/fv3jedi/testoutput/gdasapp_fv3jedi_fv3inc.ref SYMBOLIC) - -# FV3 files -file(CREATE_LINK ${PROJECT_SOURCE_DIR}/parm/io/fv3jedi_fieldmetadata_fv3inc.yaml ${PROJECT_BINARY_DIR}/test/fv3jedi/fv3jedi/fv3jedi_fieldmetadata_fv3inc.yaml SYMBOLIC) -file(CREATE_LINK ${PROJECT_SOURCE_DIR}/parm/io/fv3jedi_fieldmetadata_history.yaml ${PROJECT_BINARY_DIR}/test/fv3jedi/fv3jedi/fv3jedi_fieldmetadata_history.yaml SYMBOLIC) -file(CREATE_LINK ${PROJECT_SOURCE_DIR}/sorc/fv3-jedi/test/Data/fv3files/akbk127.nc4 ${PROJECT_BINARY_DIR}/test/fv3jedi/fv3jedi/akbk127.nc4 SYMBOLIC) -file(CREATE_LINK ${PROJECT_SOURCE_DIR}/sorc/fv3-jedi/test/Data/fv3files/fmsmpp.nml ${PROJECT_BINARY_DIR}/test/fv3jedi/fv3jedi/fmsmpp.nml SYMBOLIC) -file(CREATE_LINK ${PROJECT_SOURCE_DIR}/sorc/fv3-jedi/test/Data/fv3files/field_table_gfdl ${PROJECT_BINARY_DIR}/test/fv3jedi/fv3jedi/field_table_gfdl SYMBOLIC) - -# Tests -add_test(NAME test_gdasapp_fv3jedi_fv3inc - COMMAND srun -n6 ${CMAKE_BINARY_DIR}/bin/fv3jedi_fv3inc.x ${PROJECT_BINARY_DIR}/test/fv3jedi/testinput/gdasapp_fv3jedi_fv3inc.yaml - WORKING_DIRECTORY ${PROJECT_BINARY_DIR}/test/fv3jedi) - diff --git a/test/fv3jedi/testinput/gdasapp_fv3jedi_fv3inc.yaml b/test/fv3jedi/testinput/gdasapp_fv3jedi_fv3inc.yaml deleted file mode 100644 index 7ee403ccc..000000000 --- a/test/fv3jedi/testinput/gdasapp_fv3jedi_fv3inc.yaml +++ /dev/null @@ -1,65 +0,0 @@ -variable change: - variable change name: Model2GeoVaLs - input variables: &bkgvars [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr,hgtsfc] - output variables: &fv3incrvars [ua,va,t,sphum,ice_wat,liq_wat,o3mr,delp,delz] -jedi increment variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] -fv3 increment variables: *fv3incrvars -background geometry: - fms initialization: - namelist filename: ./fv3jedi/fmsmpp.nml - field table filename: ./fv3jedi/field_table_gfdl - akbk: ./fv3jedi/akbk127.nc4 - layout: - - '1' - - '1' - npx: '13' - npy: '13' - npz: '127' - field metadata override: ./fv3jedi/fv3jedi_fieldmetadata_history.yaml -jedi increment geometry: - fms initialization: - namelist filename: ./fv3jedi/fmsmpp.nml - field table filename: ./fv3jedi/field_table_gfdl - akbk: ./fv3jedi/akbk127.nc4 - layout: - - '1' - - '1' - npx: '13' - npy: '13' - npz: '127' - field metadata override: ./fv3jedi/fv3jedi_fieldmetadata_history.yaml -fv3 increment geometry: - fms initialization: - namelist filename: ./fv3jedi/fmsmpp.nml - field table filename: ./fv3jedi/field_table_gfdl - akbk: ./fv3jedi/akbk127.nc4 - layout: - - '1' - - '1' - npx: '13' - npy: '13' - npz: '127' - field metadata override: ./fv3jedi/fv3jedi_fieldmetadata_fv3inc.yaml -members: -- background input: - filetype: cube sphere history - datapath: ../testdata/ - provider: ufs - datetime: '2021-07-31T12:00:00Z' - filename: gdas.t06z.atmf006.nc - state variables: *bkgvars - jedi increment input: - filetype: cube sphere history - datapath: ../testdata/ - filename: atminc.20210731.120000.nc4 - provider: ufs - fv3 increment output: - filetype: cube sphere history - filename: atminc.20210731_120000.nc4 - provider: ufs - -test: - reference filename: testoutput/gdasapp_fv3jedi_fv3inc.ref - test output filename: testoutput/gdasapp_fv3jedi_fv3inc.test.out - float relative tolerance: 1.0e-3 - diff --git a/test/fv3jedi/testoutput/gdasapp_fv3jedi_fv3inc.ref b/test/fv3jedi/testoutput/gdasapp_fv3jedi_fv3inc.ref deleted file mode 100644 index a4be55d39..000000000 --- a/test/fv3jedi/testoutput/gdasapp_fv3jedi_fv3inc.ref +++ /dev/null @@ -1,41 +0,0 @@ -Background State: - ----------------------------------------------------------------------------------------------------- -State print | number of fields = 9 | cube sphere face size: C12 -eastward_wind | Min:-7.6655158996582031e+01 Max:+1.3484048461914062e+02 RMS:+2.4474819956360815e+01 -northward_wind | Min:-5.7591831207275391e+01 Max:+6.1521602630615234e+01 RMS:+9.0604680778982232e+00 -air_temperature | Min:+1.6467715454101562e+02 Max:+3.1937854003906250e+02 RMS:+2.5118590413162758e+02 -surface_pressure | Min:+5.6141089843750000e+04 Max:+1.0346660156250000e+05 RMS:+9.8890740204548158e+04 -specific_humidity | Min:+1.2364032020428795e-09 Max:+2.1250871941447258e-02 RMS:+5.1335857648077696e-03 -cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+5.9844314819201827e-04 RMS:+1.2911033014274613e-05 -cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.1054204078391194e-03 RMS:+3.7434027002184771e-05 -ozone_mass_mixing_ratio | Min:+8.6089233519714981e-09 Max:+1.6528036212548614e-05 RMS:+4.4014999048943556e-06 -sfc_geopotential_height_times_grav | Min:-3.9759671688079834e+00 Max:+4.8742519531250000e+03 RMS:+6.2112179267749525e+02 ----------------------------------------------------------------------------------------------------- -JEDI Increment: - ----------------------------------------------------------------------------------------------------- -Increment print | number of fields = 8 | cube sphere face size: C12 -eastward_wind | Min:-4.3422836419308410e+00 Max:+1.2320940067737499e+01 RMS:+3.0957235443709130e-01 -northward_wind | Min:-4.1090470888107049e+00 Max:+5.4552721209750796e+00 RMS:+3.1062842460180656e-01 -air_temperature | Min:-5.2980343087781989e-01 Max:+5.1811022097894011e-01 RMS:+3.5920751813835923e-02 -surface_pressure | Min:-1.3399192319669237e+02 Max:+6.8315024915413233e+01 RMS:+1.5538727344814935e+01 -specific_humidity | Min:-2.8092260972819617e-04 Max:+2.9434075393080551e-04 RMS:+1.6532405760382759e-05 -cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 -cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 -ozone_mass_mixing_ratio | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 ----------------------------------------------------------------------------------------------------- -FV3 Increment: - ----------------------------------------------------------------------------------------------------- -Increment print | number of fields = 9 | cube sphere face size: C12 -eastward_wind | Min:-4.3422836419308410e+00 Max:+1.2320940067737499e+01 RMS:+3.0957235443709130e-01 -northward_wind | Min:-4.1090470888107049e+00 Max:+5.4552721209750796e+00 RMS:+3.1062842460180656e-01 -air_temperature | Min:-5.2980343087781989e-01 Max:+5.1811022097894011e-01 RMS:+3.5920751813835923e-02 -specific_humidity | Min:-2.8092260972819617e-04 Max:+2.9434075393080551e-04 RMS:+1.6532405760382759e-05 -cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 -cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 -ozone_mass_mixing_ratio | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 -air_pressure_thickness | Min:-2.9992886080290191e+00 Max:+1.5291703492039233e+00 RMS:+1.7535872214547940e-01 -layer_thickness | Min:-4.6699236754648155e-01 Max:+7.4693987323735200e-01 RMS:+3.1162055487823255e-02 ----------------------------------------------------------------------------------------------------- diff --git a/test/gw-ci/CMakeLists.txt b/test/gw-ci/CMakeLists.txt index 4f1a969e3..5a07090d0 100644 --- a/test/gw-ci/CMakeLists.txt +++ b/test/gw-ci/CMakeLists.txt @@ -1,11 +1,220 @@ +# Function that adds a test for a given GW task +function(add_task task_name test_prefix is_full_cycle HALF_CYCLE FULL_CYCLE pslot WORKING_DIRECTORY PROJECT_SOURCE_DIR) + + # Get subtask names if task is a metatask + if("${task_name}" STREQUAL "gdas_fcst") + set(subtask_names_list + "gdas_fcst_seg0") + elseif("${task_name}" STREQUAL "enkfgdas_fcst") + if("${pslot}" STREQUAL "C48mx500_hybAOWCDA") + set(subtask_names_list + "enkfgdas_fcst_mem001" + "enkfgdas_fcst_mem002" + "enkfgdas_fcst_mem003") + else() + set(subtask_names_list + "enkfgdas_fcst_mem001" + "enkfgdas_fcst_mem002") + endif() + elseif("${task_name}" STREQUAL "gdas_atmos_prod") + set(subtask_names_list + "gdas_atmos_prod_f000" + "gdas_atmos_prod_f001" + "gdas_atmos_prod_f002" + "gdas_atmos_prod_f003" + "gdas_atmos_prod_f004" + "gdas_atmos_prod_f005" + "gdas_atmos_prod_f006" + "gdas_atmos_prod_f007" + "gdas_atmos_prod_f008" + "gdas_atmos_prod_f009") + elseif("${task_name}" STREQUAL "enkfgdas_epmn") + set(subtask_names_list + "enkfgdas_epos001" + "enkfgdas_epos002" + "enkfgdas_epos003" + "enkfgdas_epos004" + "enkfgdas_epos005" + "enkfgdas_epos006") + elseif("${task_name}" STREQUAL "enkfgdas_ecmn") + if ("${pslot}" STREQUAL "C96C48_ufs_hybatmDA") + set(subtask_names_list + "enkfgdas_ecen000") + else() + set(subtask_names_list + "enkfgdas_ecen000" + "enkfgdas_ecen001" + "enkfgdas_ecen002") + endif() + else() + set(subtask_names_list ${task_name}) + endif() + + # Convert list to comma-delimited string + string(JOIN "," subtask_names ${subtask_names_list}) + + # Get task dependencies + set(TEST_DEPENDS) + if(NOT ${is_full_cycle}) + if("${task_name}" STREQUAL "gdas_fcst") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_stage_ic_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_atmos_prod") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_fcst_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_fcst") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_stage_ic_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_echgres") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_fcst_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_fcst_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_epmn") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_fcst_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_aeroanlgenb") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_fcst_${HALF_CYCLE}") + else() + list(APPEND TEST_DEPENDS "${test_prefix}") + endif() + else() + if("${task_name}" STREQUAL "gdas_prep") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_fcst_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_atmos_prod_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_anal") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_epmn_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prep_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_prepatmiodaobs") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prep_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_atmanlinit") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_epmn_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prepatmiodaobs_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_atmanlvar") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_atmanlinit_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_atmanlfv3inc") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_atmanlvar_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_atmanlfinal") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_atmanlfv3inc_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_aeroanlinit") + list(APPEND TEST_DEPENDS "${test_prefix}_aeroanlgenb_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prep_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_aeroanlvar") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_aeroanlinit_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_aeroanlfinal") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_aeroanlvar_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_snowanl") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prep_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_sfcanl") + if("${pslot}" STREQUAL "C96C48_ufs_hybatmDA") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_atmanlfinal_${FULL_CYCLE}") + elseif("${pslot}" STREQUAL "C96C48_hybatmaerosnowDA") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_anal_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_snowanal_${FULL_CYCLE}") + else() + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_anal_${FULL_CYCLE}") + endif() + elseif("${task_name}" STREQUAL "gdas_analcalc") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_echgres_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_sfcanl_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_fcst") + if("${pslot}" STREQUAL "C96C48_hybatmaerosnowDA") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_sfcanl_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_aeroanlfinal_${FULL_CYCLE}") + elseif("${pslot}" STREQUAL "C48mx500_3DVarAOWCDA") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_sfcanl_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_marineanlfinal_${FULL_CYCLE}") + else() + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_sfcanl_${FULL_CYCLE}") + endif() + elseif("${task_name}" STREQUAL "enkfgdas_atmensanlinit") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_epmn_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prepatmiodaobs_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_atmensanlobs") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_atmensanlinit_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_atmensanlsol") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_atmensanlobs_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_atmensanlfv3inc") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_atmensanlsol_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_atmensanlfinal") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_atmensanlfv3inc_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_eobs") + set(TEST_DEPENDS) + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_epmn_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prep_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_ediag") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_eobs_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_eupd") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_ediag_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_ecmn") + if("${pslot}" STREQUAL "C96C48_ufs_hybatmDA") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_analcalc_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_atmensanlfinal_${FULL_CYCLE}") + else() + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_analcalc_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_eupd_${FULL_CYCLE}") + endif() + elseif("${task_name}" STREQUAL "enkfgdas_esnowrecen") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_epmn_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_snowanl_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "enkfgdas_esfc") + if("${pslot}" STREQUAL "C96C48_ufs_hybatmDA") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_analcalc_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_atmensanlfinal_${FULL_CYCLE}") + elseif("${pslot}" STREQUAL "C96C48_hybatmaerosnowDA") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_analcalc_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_eupd_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_esnowrecen_${FULL_CYCLE}") + else() + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_analcalc_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_eupd_${FULL_CYCLE}") + endif() + elseif("${task_name}" STREQUAL "enkfgdas_fcst") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_ecmn_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_esfc_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_prepoceanobs") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_fcst_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_marinebmat") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_fcst_${HALF_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_marineanlinit") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_fcst_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prepoceanobs_${FULL_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_marinebmat_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_marineanlvar") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_marineanlinit_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_marineanlchkpt") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_marineanlvar_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_marineanlfinal") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_marineanlchkpt_${FULL_CYCLE}") + elseif("${task_name}" STREQUAL "gdas_marineanlletkf") + list(APPEND TEST_DEPENDS "${test_prefix}_enkfgdas_fcst_${HALF_CYCLE}") + list(APPEND TEST_DEPENDS "${test_prefix}_gdas_prepoceanobs_${FULL_CYCLE}") + else() + list(APPEND TEST_DEPENDS "${test_prefix}") + endif() + endif() + + # Set cycle + if(${is_full_cycle}) + set(cycle ${FULL_CYCLE}) + else() + set(cycle ${HALF_CYCLE}) + endif() + + # Add Task + set(test_name ${test_prefix}_${task_name}_${cycle}) + message(STATUS "preparing ${subtask_names} for ${test_prefix} ctest") + ecbuild_add_test(TARGET ${test_name} + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/gw-ci/run_exp.sh + ARGS ${pslot} ${cycle} ${subtask_names} + WORKING_DIRECTORY ${WORKING_DIRECTORY} + TEST_DEPENDS ${TEST_DEPENDS}) +endfunction() + # Function that generates the 1/2 cycle forecast and DA tasks -function(add_cycling_tests pslot YAML_PATH HOMEgfs RUNTESTS PROJECT_SOURCE_DIR TASK_LIST) - set(test_name test_gdasapp_${pslot}) +function(add_cycling_tests pslot YAML_PATH HOMEgfs WORKING_DIRECTORY PROJECT_SOURCE_DIR HALF_CYCLE_TASKS FULL_CYCLE_TASKS) + set(test_prefix test_gdasapp_${pslot}) # Prepare the COMROOT and EXPDIR for the cycling ctests - add_test(NAME ${test_name} - COMMAND /bin/bash -c "${PROJECT_SOURCE_DIR}/test/gw-ci/create_exp.sh ${YAML_PATH} ${pslot} ${HOMEgfs} ${RUNTESTS}" - WORKING_DIRECTORY ${RUNTESTS}) - set_tests_properties(${test_name} PROPERTIES LABELS "manual") + ecbuild_add_test(TARGET ${test_prefix} + TYPE SCRIPT + COMMAND ${PROJECT_SOURCE_DIR}/test/gw-ci/create_exp.sh + ARGS ${YAML_PATH} ${pslot} ${HOMEgfs} ${WORKING_DIRECTORY} + WORKING_DIRECTORY ${WORKING_DIRECTORY}) # Get the 1/2 cycle and full cycle's dates execute_process( @@ -18,78 +227,151 @@ function(add_cycling_tests pslot YAML_PATH HOMEgfs RUNTESTS PROJECT_SOURCE_DIR T list(GET DATES_LIST 0 HALF_CYCLE) list(GET DATES_LIST 1 FULL_CYCLE) - # stage IC's - message(STATUS "staging the 1/2 cycle IC's for ${pslot} ctest") - add_test(NAME ${test_name}_gdas_stage_ic_${HALF_CYCLE} - COMMAND /bin/bash -c "${PROJECT_SOURCE_DIR}/test/gw-ci/run_exp.sh ${pslot} gdas_stage_ic ${HALF_CYCLE}" - WORKING_DIRECTORY ${RUNTESTS}) - set_tests_properties(${test_name}_gdas_stage_ic_${HALF_CYCLE} PROPERTIES LABELS "manual") - - # stage ensemble ics - if (letkf) - message(STATUS "preparing enkfgdas_stage_ic for ${pslot} ctest") - add_test(NAME ${test_name}_enkfgdas_stage_ic_${HALF_CYCLE} - COMMAND /bin/bash -c "${PROJECT_SOURCE_DIR}/test/gw-ci/run_exp.sh ${pslot} enkfgdas_stage_ic ${HALF_CYCLE}" - WORKING_DIRECTORY ${RUNTESTS}) - set_tests_properties(${test_name}_enkfgdas_stage_ic_${HALF_CYCLE} PROPERTIES LABELS "manual") - endif() - - # 1/2 cycle gdas_fcst - message(STATUS "preparing 1/2 cycle gdas_fcst for ${pslot} ctest") - add_test(NAME ${test_name}_gdas_fcst_seg0_${HALF_CYCLE} - COMMAND /bin/bash -c "${PROJECT_SOURCE_DIR}/test/gw-ci/run_exp.sh ${pslot} gdas_fcst_seg0 ${HALF_CYCLE}" - WORKING_DIRECTORY ${RUNTESTS}) - set_tests_properties(${test_name}_gdas_fcst_seg0_${HALF_CYCLE} PROPERTIES LABELS "manual") - - # 1/2 cycle enkfgdas_fcst - if (letkf) - set(ENS_MEMS "mem001" "mem002" "mem003") - foreach(ENS_MEM ${ENS_MEMS}) - message(STATUS "preparing 1/2 cycle enkfgdas_fcst_${ENS_MEM} for ${pslot} ctest") - add_test(NAME ${test_name}_enkfgdas_fcst_${ENS_MEM}_${HALF_CYCLE} - COMMAND /bin/bash -c "${PROJECT_SOURCE_DIR}/test/gw-ci/run_exp.sh ${pslot} enkfgdas_fcst_${ENS_MEM} ${HALF_CYCLE}" - WORKING_DIRECTORY ${RUNTESTS}) - set_tests_properties(${test_name}_enkfgdas_fcst_${ENS_MEM}_${HALF_CYCLE} PROPERTIES LABELS "manual") - endforeach() - endif() - + # Select the list of tasks to run for the half cycle + message(STATUS "Half-cycle tasks ${HALF_CYCLE_TASKS}") + set(is_full_cycle FALSE) + foreach(task_name ${HALF_CYCLE_TASKS}) + add_task(${task_name} ${test_prefix} ${is_full_cycle} ${HALF_CYCLE} ${FULL_CYCLE} ${pslot} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR}) + endforeach() + # Select the list of tasks to run for the full cycle - message(STATUS "Tasks ${TASK_LIST}") - - foreach(task ${TASK_LIST}) - message(STATUS "preparing the full cycle ${task} for ${pslot} ctest") - add_test(NAME ${test_name}_${task}_${FULL_CYCLE} - COMMAND /bin/bash -c "${PROJECT_SOURCE_DIR}/test/gw-ci/run_exp.sh ${pslot} ${task} ${FULL_CYCLE}" - WORKING_DIRECTORY ${RUNTESTS}) - set_tests_properties(${test_name}_${task}_${FULL_CYCLE} PROPERTIES LABELS "manual") + message(STATUS "Full-cycle tasks ${FULL_CYCLE_TASKS}") + set(is_full_cycle TRUE) + foreach(task_name ${FULL_CYCLE_TASKS}) + add_task(${task_name} ${test_prefix} ${is_full_cycle} ${HALF_CYCLE} ${FULL_CYCLE} ${pslot} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR}) endforeach() endfunction() if (WORKFLOW_TESTS) # Setup the environement set(HOMEgfs ${CMAKE_SOURCE_DIR}/../../..) - set(RUNTESTS ${CMAKE_CURRENT_BINARY_DIR}/../../test/gw-ci) + set(WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/../../test/gw-ci) + + # GSI Atm DA C96/C48 + # ------------------ + set(pslot "C96C48_hybatmDA") + set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml) + set(HALF_CYCLE_TASKS + "gdas_stage_ic" + "gdas_fcst" + "gdas_atmos_prod" + "enkfgdas_stage_ic" + "enkfgdas_fcst" + "enkfgdas_echgres" + "enkfgdas_epmn") + set(FULL_CYCLE_TASKS + "gdas_prep" + "gdas_anal" + "gdas_sfcanl" + "gdas_analcalc" + "gdas_fcst" + "enkfgdas_eobs" + "enkfgdas_ediag" + "enkfgdas_eupd" + "enkfgdas_ecmn" + "enkfgdas_esfc" + "enkfgdas_fcst" + ) - # 3DVAR WCDA, low-res + add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR} "${HALF_CYCLE_TASKS}" "${FULL_CYCLE_TASKS}") + # JEDI Atm DA C96/C48 # ------------------- - set(pslot "WCDA-3DVAR-C48mx500") - set(YAML_PATH ${HOMEgfs}/ci/cases/pr/C48mx500_3DVarAOWCDA.yaml) - set(TASK_LIST + set(pslot "C96C48_ufs_hybatmDA") + set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml) + set(HALF_CYCLE_TASKS + "gdas_stage_ic" + "gdas_fcst" + "gdas_atmos_prod" + "enkfgdas_stage_ic" + "enkfgdas_fcst" + "enkfgdas_echgres" + "enkfgdas_epmn") + set(FULL_CYCLE_TASKS + "gdas_prep" + "gdas_prepatmiodaobs" + "gdas_atmanlinit" + "gdas_atmanlvar" + "gdas_atmanlfv3inc" + "gdas_atmanlfinal" + "gdas_sfcanl" + "gdas_analcalc" + "gdas_fcst" + "enkfgdas_atmensanlinit" + "enkfgdas_atmensanlobs" + "enkfgdas_atmensanlsol" + "enkfgdas_atmensanlfv3inc" + "enkfgdas_atmensanlfinal" + "enkfgdas_ecmn" + "enkfgdas_esfc" + "enkfgdas_fcst" + ) + add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR} "${HALF_CYCLE_TASKS}" "${FULL_CYCLE_TASKS}") + + # Aero-Land DA C96 + # ---------------- + set(pslot "C96C48_hybatmaerosnowDA") + set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml) + set(HALF_CYCLE_TASKS + "gdas_stage_ic" + "gdas_fcst" + "gdas_atmos_prod" + "gdas_aeroanlgenb" + "enkfgdas_stage_ic" + "enkfgdas_fcst" + "enkfgdas_echgres" + "enkfgdas_epmn") + set(FULL_CYCLE_TASKS + "gdas_prep" + "gdas_anal" + "gdas_aeroanlinit" + "gdas_aeroanlvar" + "gdas_aeroanlfinal" + "gdas_snowanl" + "gdas_sfcanl" + "gdas_analcalc" + "gdas_fcst" + "enkfgdas_eobs" + "enkfgdas_ediag" + "enkfgdas_eupd" + "enkfgdas_ecmn" + "enkfgdas_esnowrecen" + "enkfgdas_esfc" + "enkfgdas_fcst" + ) + add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR} "${HALF_CYCLE_TASKS}" "${FULL_CYCLE_TASKS}") + + # GSI Atm DA C48, JEDI Marine DA 500 + # ---------------------------------- + set(pslot "C48mx500_3DVarAOWCDA") + set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml) + set(HALF_CYCLE_TASKS + "gdas_stage_ic" + "gdas_fcst") + set(FULL_CYCLE_TASKS "gdas_prepoceanobs" "gdas_marinebmat" "gdas_marineanlinit" "gdas_marineanlvar" "gdas_marineanlchkpt" "gdas_marineanlfinal" + "gdas_prep" + "gdas_anal" + "gdas_sfcanl" + "gdas_fcst" ) - add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${RUNTESTS} ${PROJECT_SOURCE_DIR} "${TASK_LIST}") + add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR} "${HALF_CYCLE_TASKS}" "${FULL_CYCLE_TASKS}") # WCDA, low-res, ensemble da # ------------- - set(pslot "WCDA-hyb-C48mx500") + set(pslot "C48mx500_hybAOWCDA") set(letkf TRUE) - set(YAML_PATH ${HOMEgfs}/ci/cases/pr/C48mx500_hybAOWCDA.yaml) - set(TASK_LIST + set(YAML_PATH ${HOMEgfs}/ci/cases/pr/${pslot}.yaml) + set(HALF_CYCLE_TASKS + "gdas_stage_ic" + "gdas_fcst" + "enkfgdas_stage_ic" + "enkfgdas_fcst") + set(FULL_CYCLE_TASKS "gdas_prepoceanobs" "gdas_marineanlletkf" # TODO(AFE) waiting until these are working for hybrid @@ -99,40 +381,31 @@ if (WORKFLOW_TESTS) # "gdas_marineanlchkpt" # "gdas_marineanlfinal" ) - add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${RUNTESTS} ${PROJECT_SOURCE_DIR} "${TASK_LIST}") + add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR} "${HALF_CYCLE_TASKS}" "${FULL_CYCLE_TASKS}") set(letkf FALSE) -endif() - -option(RUN_GW_CI "Enable the global-workflow CI tests" OFF) -if (RUN_GW_CI) - # Aero-Land DA, C96 - # ----------------- - set(pslot "Aero-Snow-3DVAR-C96") - set(YAML_PATH ${HOMEgfs}/ci/cases/pr/C96C48_hybatmaerosnowDA.yaml) - set(TASK_LIST) # empty list for now - add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${RUNTESTS} ${PROJECT_SOURCE_DIR} "${TASK_LIST}") - - # Atm DA, C96/C48 - # --------------- - set(pslot "Atm-hyb-C96C48") - set(YAML_PATH ${HOMEgfs}/ci/cases/pr/C96C48_ufs_hybatmDA.yaml) - set(TASK_LIST) # empty list for now - add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${RUNTESTS} ${PROJECT_SOURCE_DIR} "${TASK_LIST}") # GFSv17, 3DVAR prototype # ----------------------- - set(pslot "GFSv17-3DVAR-C384mx025") - set(YAML_PATH ${HOMEgfs}/ci/cases/gfsv17/C384mx025_3DVarAOWCDA.yaml) - set(TASK_LIST - "gdas_prepoceanobs" - "gdas_marinebmat" - "gdas_marineanlinit" - "gdas_marineanlvar" - "gdas_marineanlchkpt" - "gdas_marineanlfinal" - "gdas_ocnanalvrfy" - "gdas_prep" - "gdas_anal" - ) - add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${RUNTESTS} ${PROJECT_SOURCE_DIR} "${TASK_LIST}") + option(TEST_GFS17 "Enable the GFSv17 prototype CI tests" OFF) + if(TEST_GFS17) + set(pslot "GFSv17-3DVAR-C384mx025") + set(YAML_PATH ${HOMEgfs}/ci/cases/gfsv17/${pslot}.yaml) + set(HALF_CYCLE_TASKS + "gdas_stage_ic" + "gdas_fcst") + set(FULL_CYCLE_TASKS + "gdas_prepoceanobs" + "gdas_marinebmat" + "gdas_marineanlinit" + "gdas_marineanlvar" + "gdas_marineanlchkpt" + "gdas_marineanlfinal" + "gdas_ocnanalvrfy" + "gdas_prep" + "gdas_anal" + "gdas_sfcanl" + "gdas_fcst" + ) + add_cycling_tests(${pslot} ${YAML_PATH} ${HOMEgfs} ${WORKING_DIRECTORY} ${PROJECT_SOURCE_DIR} "${HALF_CYCLE_TASKS}" "${FULL_CYCLE_TASKS}") + endif() endif() diff --git a/test/gw-ci/run_exp.sh b/test/gw-ci/run_exp.sh index 8040860a0..3c02dbb1a 100755 --- a/test/gw-ci/run_exp.sh +++ b/test/gw-ci/run_exp.sh @@ -1,39 +1,55 @@ #!/bin/bash pslot=$1 -TASK_NAME=$2 -CYCLE=$3 +CYCLE=$2 +shift +shift +task_args=("$@") # Define the workflow XML and database files WORKFLOW_XML=${pslot}/EXPDIR/${pslot}/${pslot}.xml WORKFLOW_DB=${pslot}/EXPDIR/${pslot}/${pslot}.db # Boot the task -echo "booting $TASK_NAME for cycle $CYCLE" +echo "booting ${TASK_ARRAY[@]} for cycle $CYCLE" if [[ ! -e "$WORKFLOW_DB" ]]; then - rocotorun -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$TASK_NAME" -c "$CYCLE" + rocotorun -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$task_args" -c "$CYCLE" fi -rocotoboot -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$TASK_NAME" -c "$CYCLE" +rocotoboot -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$task_args" -c "$CYCLE" +# Loop through tasks +IFS=',' read -r -a TASK_ARRAY <<< "$task_args" +num_tasks=${#TASK_ARRAY[@]} while true; do # Update the status of the task - rocotorun -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$TASK_NAME" -c "$CYCLE" + rocotorun -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$task_args" -c "$CYCLE" - # Check the task status - OUTPUT=$(rocotostat -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$TASK_NAME" -c "$CYCLE") - STATUS=$(echo "$OUTPUT" | awk '$2 == task {print $4}' task="$TASK_NAME") + num_succeeded=0 + for task in "${TASK_ARRAY[@]}"; do + + # Check the task status + OUTPUT=$(rocotostat -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$task" -c "$CYCLE") + STATUS=$(echo "$OUTPUT" | awk '$2 == task {print $4}' task="$task") - if [[ "$STATUS" == "SUCCEEDED" ]]; then - echo "The task succeeded." + if [[ "$STATUS" == "SUCCEEDED" ]]; then + echo "$pslot"_"$task"_"$CYCLE"" succeeded." + num_succeeded=$((num_succeeded + 1)) + elif [[ "$STATUS" == "FAILED" ]]; then + echo "$pslot"_"$task"_"$CYCLE"" failed." + exit 1 + elif [[ "$STATUS" == "DEAD" ]]; then + echo "$pslot"_"$task"_"$CYCLE"" is dead." + exit 1 + elif [[ "$STATUS" == "SUBMITTING" ]] || [[ "$STATUS" == "QUEUED" ]] || [[ "$STATUS" == "RUNNING" ]]; then + echo "$pslot"_"$task"_"$CYCLE"" is in state: $STATUS" + else + echo "$pslot"_"$task"_"$CYCLE"" is in unrecognized state: $STATUS. Rewinding..." + rocotorewind -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$task_args" -c "$CYCLE" + rocotoboot -w "$WORKFLOW_XML" -d "$WORKFLOW_DB" -t "$task_args" -c "$CYCLE" + fi + done + if [[ "$num_succeeded" == "$num_tasks" ]]; then exit 0 - elif [[ "$STATUS" == "FAILED" ]]; then - echo "The task failed." - exit 1 - elif [[ "$STATUS" == "DEAD" ]]; then - echo "The task is dead." - exit 1 - else - echo "The task is in state: $STATUS" fi sleep 10 done diff --git a/test/testreference/C48mx500_3DVarAOWCDA_3dfgat.ref b/test/testreference/C48mx500_3DVarAOWCDA_3dfgat.ref new file mode 100644 index 000000000..b28df9aec --- /dev/null +++ b/test/testreference/C48mx500_3DVarAOWCDA_3dfgat.ref @@ -0,0 +1,54 @@ +Norm of input parameter StdDev: 4.1916150456516459e+02 +CostJb : Nonlinear Jb = 0.0000000000000000e+00 +CostJo : Nonlinear Jo(adt_rads_all) = 3.6538107293180053e+02, nobs = 154056, Jo/n = 2.3717419180804417e-03, err = 3.5902523361909755e+00 +CostJo : Nonlinear Jo(sst_avhrr_ma_l3u) = 2.2674500789797807e+05, nobs = 80795, Jo/n = 2.8064237625840467e+00, err = 3.1933209964416054e-01 +CostJo : Nonlinear Jo(sst_avhrr_mb_l3u) = 2.4093341994206450e+05, nobs = 87590, Jo/n = 2.7506955125249970e+00, err = 3.1303879303248278e-01 +CostJo : Nonlinear Jo(sst_viirs_npp_l3u) = 3.5095100144345453e+05, nobs = 86464, Jo/n = 4.0589262750214488e+00, err = 2.7352638780435701e-01 +CostJo : Nonlinear Jo(sst_viirs_n20_l3u) = 3.4617882174260722e+05, nobs = 82328, Jo/n = 4.2048734542635220e+00, err = 2.7610924066693887e-01 +CostJo : Nonlinear Jo(sst_abi_g16_l3c) = 0.0000000000000000e+00 --- No Observations +CostJo : Nonlinear Jo(sst_abi_g17_l3c) = 0.0000000000000000e+00 --- No Observations +CostJo : Nonlinear Jo(sst_ahi_h08_l3c) = 0.0000000000000000e+00 --- No Observations +CostJo : Nonlinear Jo(icec_amsr2_north) = 1.3776003730013903e+05, nobs = 238447, Jo/n = 5.7773860564460455e-01, err = 1.1973958453579239e-01 +CostJo : Nonlinear Jo(icec_amsr2_south) = 1.3525377877554770e+06, nobs = 294824, Jo/n = 4.5876108720981907e+00, err = 1.6104199583000647e-01 +CostJo : Nonlinear Jo(insitu_profile_argo) = 1.2371155464032217e+03, nobs = 74525, Jo/n = 1.6600007331811092e-02, err = 1.0000000000000000e+01 +CostFunction: Nonlinear J = 2.6567085727010556e+06 +RPCGMinimizer: reduction in residual norm = 3.3320242450517824e-02 +CostFunction::addIncrement: Analysis: + Valid time: 2021-03-24T18:00:00Z + sea_ice_area_fraction min=-0.3191478642087981 max=1.9094064942717854 mean=0.1380060365165569 + sea_ice_thickness min=0.0000000000000000 max=4.7237067222595215 mean=0.1716933516882944 + sea_ice_snow_thickness min=0.0000000000000000 max=0.5992891192436218 mean=0.0227558953028715 + sea_water_salinity min=-0.0004127016278705 max=40.0432853698730469 mean=33.6826135810349925 +sea_water_potential_temperature min=-13.5424639498294965 max=31.5094358260619565 mean=11.4876284245572435 + eastward_sea_water_velocity min=-0.9187383651733398 max=0.6746135354042053 mean=-0.0008460743757450 + northward_sea_water_velocity min=-0.6511899232864380 max=0.9435366392135620 mean=0.0030693165578485 + sea_surface_height_above_geoid min=-1.9814533174212232 max=0.8682830617264085 mean=-0.3311748439341126 + sea_water_cell_thickness min=0.0000000000000000 max=5416.6992187500000000 mean=128.6267671163319903 + ocean_mixed_layer_thickness min=2.3304977416992188 max=2417.2331242561340332 mean=148.3113220148310063 + sea_water_depth min=2.3304977416992188 max=2949.9484505653381348 mean=150.4446913535238650 + + + + + + + + + + + + + +CostJb : Nonlinear Jb = 319.2500686210223648 +CostJo : Nonlinear Jo(adt_rads_all) = 269.8785811470986573, nobs = 154056, Jo/n = 0.0017518212932122, err = 3.5902523361909755 +CostJo : Nonlinear Jo(sst_avhrr_ma_l3u) = 97733.3440574856213061, nobs = 80795, Jo/n = 1.2096459441485936, err = 0.3193320996441605 +CostJo : Nonlinear Jo(sst_avhrr_mb_l3u) = 102482.6442049633478746, nobs = 87590, Jo/n = 1.1700267633858128, err = 0.3130387930324828 +CostJo : Nonlinear Jo(sst_viirs_npp_l3u) = 179681.9646639756683726, nobs = 86464, Jo/n = 2.0781130258139302, err = 0.2735263878043570 +CostJo : Nonlinear Jo(sst_viirs_n20_l3u) = 165441.5019567124545574, nobs = 82328, Jo/n = 2.0095411276444519, err = 0.2761092406669389 +CostJo : Nonlinear Jo(sst_abi_g16_l3c) = 0.0000000000000000 --- No Observations +CostJo : Nonlinear Jo(sst_abi_g17_l3c) = 0.0000000000000000 --- No Observations +CostJo : Nonlinear Jo(sst_ahi_h08_l3c) = 0.0000000000000000 --- No Observations +CostJo : Nonlinear Jo(icec_amsr2_north) = 96049.0640872453514021, nobs = 238447, Jo/n = 0.4028109562596525, err = 0.1197395845357924 +CostJo : Nonlinear Jo(icec_amsr2_south) = 507683.7047332451329567, nobs = 294824, Jo/n = 1.7219890671493676, err = 0.1610419958300065 +CostJo : Nonlinear Jo(insitu_profile_argo) = 608.7904107136805578, nobs = 74525, Jo/n = 0.0081689421095428, err = 10.0000000000000000 +CostFunction: Nonlinear J = 1150270.1427641094196588 diff --git a/test/testreference/C96C48_ufs_hybatmDA_3dvar-fv3inc.ref b/test/testreference/C96C48_ufs_hybatmDA_3dvar-fv3inc.ref new file mode 100644 index 000000000..6f3adb18d --- /dev/null +++ b/test/testreference/C96C48_ufs_hybatmDA_3dvar-fv3inc.ref @@ -0,0 +1,41 @@ +Background State: + +---------------------------------------------------------------------------------------------------- +State print | number of fields = 9 | cube sphere face size: C96 +eastward_wind | Min:-8.7593299865722656e+01 Max:+1.1421906280517578e+02 RMS:+1.7446423933066384e+01 +northward_wind | Min:-9.0978759765625000e+01 Max:+8.9302459716796875e+01 RMS:+9.8048456519148388e+00 +air_temperature | Min:+1.7290483093261719e+02 Max:+3.1017132568359375e+02 RMS:+2.5022377762999352e+02 +air_pressure_at_surface | Min:+5.1309082031250000e+04 Max:+1.0433011718750000e+05 RMS:+9.8914626690611054e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+9.9999986069576607e-10 Max:+2.1381899714469910e-02 RMS:+5.0230919069545812e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+5.7223520707339048e-04 RMS:+9.4296924830407741e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.6279185656458139e-03 RMS:+3.7809568286336720e-05 +ozone_mass_mixing_ratio | Min:+3.6120087476554374e-10 Max:+1.7313132048002444e-05 RMS:+4.4655432291945023e-06 +geopotential_height_at_surface | Min:-2.9894643783569336e+01 Max:+5.3870561523437500e+03 RMS:+6.4442219321892003e+02 +---------------------------------------------------------------------------------------------------- +JEDI Increment: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 8 | cube sphere face size: C48 +eastward_wind | Min:-2.1115621251510674e-07 Max:+1.1444664416160322e-07 RMS:+1.8401316033983295e-09 +northward_wind | Min:-1.0219621415785696e-07 Max:+2.6249988138715707e-07 RMS:+1.8295902505163720e-09 +air_temperature | Min:-5.2000757477799198e-08 Max:+6.6504355800134363e-08 RMS:+7.1626194815483433e-10 +air_pressure_at_surface | Min:-2.0445149857550859e-06 Max:+9.8957389127463102e-07 RMS:+4.2160438885855514e-08 +water_vapor_mixing_ratio_wrt_moist_air | Min:-3.5212104499554586e-11 Max:+2.4915642032191654e-11 RMS:+2.7352479311235747e-13 +cloud_liquid_ice | Min:-5.2622388732733935e-13 Max:+3.8117236092690345e-13 RMS:+3.4198803820164734e-15 +cloud_liquid_water | Min:-1.1565164516162685e-11 Max:+3.1649457890922744e-12 RMS:+1.5995494806702646e-14 +ozone_mass_mixing_ratio | Min:-1.0346794247831136e-06 Max:+1.3451623930433847e-06 RMS:+3.6858146749007146e-08 +---------------------------------------------------------------------------------------------------- +FV3 Increment: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-2.1115621251510674e-07 Max:+1.1444664416160322e-07 RMS:+1.8401316033983295e-09 +northward_wind | Min:-1.0219621415785696e-07 Max:+2.6249988138715707e-07 RMS:+1.8295902505163720e-09 +air_temperature | Min:-5.2000757477799198e-08 Max:+6.6504355800134363e-08 RMS:+7.1626194815483433e-10 +water_vapor_mixing_ratio_wrt_moist_air | Min:-3.5212104499554586e-11 Max:+2.4915642032191654e-11 RMS:+2.7352479311235747e-13 +cloud_liquid_ice | Min:-5.2622388732733935e-13 Max:+3.8117236092690345e-13 RMS:+3.4198803820164734e-15 +cloud_liquid_water | Min:-1.1565164516162685e-11 Max:+3.1649457890922744e-12 RMS:+1.5995494806702646e-14 +ozone_mass_mixing_ratio | Min:-1.0346794247831136e-06 Max:+1.3451623930433847e-06 RMS:+3.6858146749007146e-08 +air_pressure_thickness | Min:-3.8906364352442324e-08 Max:+1.7884758563013747e-08 RMS:+4.2747856122164087e-10 +layer_thickness | Min:-1.9763365344260819e-07 Max:+1.8311084204469807e-07 RMS:+3.6402384455212584e-09 +---------------------------------------------------------------------------------------------------- diff --git a/test/testreference/C96C48_ufs_hybatmDA_3dvar.ref b/test/testreference/C96C48_ufs_hybatmDA_3dvar.ref new file mode 100644 index 000000000..711f08fb2 --- /dev/null +++ b/test/testreference/C96C48_ufs_hybatmDA_3dvar.ref @@ -0,0 +1,124 @@ +CostJb : Nonlinear Jb = 0.0000000000000000e+00 +CostJo : Nonlinear Jo(Aircraft) = 6.0590797038184456e+05, nobs = 504555, Jo/n = 1.2008759607611550e+00, err = 2.2437239435917040e+00 +CostJo : Nonlinear Jo(ascatw_ascat_metop-b) = 1.5949936485170507e+04, nobs = 26314, Jo/n = 6.0613880387514274e-01, err = 1.8277692518568445e+00 +CostJo : Nonlinear Jo(ATMS N20) = 4.8387730216799086e+04, nobs = 156588, Jo/n = 3.0901301643037199e-01, err = 5.2594000470964719e+00 +CostJo : Nonlinear Jo(surface_ps) = 2.6308196193705146e+04, nobs = 107322, Jo/n = 2.4513330159431565e-01, err = 5.9305643428180190e+02 +CostJo : Nonlinear Jo(gnssrobndnbam) = 6.1501893265653157e+05, nobs = 473864, Jo/n = 1.2978806844506685e+00, err = 3.2933330370258057e-04 +CostJo : Nonlinear Jo(ompsnp_npp) = 2.1269336098572853e+03, nobs = 3087, Jo/n = 6.8899695816562534e-01, err = 2.4001367423170068e+00 +CostJo : Nonlinear Jo(ompstc_npp) = 3.3784707883660294e+03, nobs = 3696, Jo/n = 9.1408841676570063e-01, err = 6.0000000000000000e+00 +CostJo : Nonlinear Jo(satwind_goes-16) = 6.9383960384868606e+03, nobs = 193154, Jo/n = 3.5921575729660586e-02, err = 1.1892541771722902e+01 +CostFunction: Nonlinear J = 1.3240165663707610e+06 +DRPCGMinimizer: reduction in residual norm = 2.8257552285466486e-01 +CostFunction::addIncrement: Analysis: +---------------------------------------------------------------------------------------------------- +State print | number of fields = 22 | cube sphere face size: C96 +eastward_wind | Min:-8.7593299865709369e+01 Max:+1.1421906280506562e+02 RMS:+1.7446423933063677e+01 +northward_wind | Min:-9.0978759765616502e+01 Max:+8.9302459716826505e+01 RMS:+9.8048456519093889e+00 +air_temperature | Min:+1.7290483093261747e+02 Max:+3.1017132568363934e+02 RMS:+2.5022377762999326e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7837935791015625e+03 RMS:+9.5699700087025974e+02 +air_pressure_at_surface | Min:+5.1309082031249884e+04 Max:+1.0433011718749903e+05 RMS:+9.8914626690610530e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+9.9999986088507587e-10 Max:+2.1381899714470930e-02 RMS:+5.0230919069543158e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+5.7223520707321528e-04 RMS:+9.4296924830162644e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.6279185656660684e-03 RMS:+3.7809568286304757e-05 +ozone_mass_mixing_ratio | Min:+3.8859406171368113e-10 Max:+1.7313133576612057e-05 RMS:+4.4663053755671636e-06 +geopotential_height_at_surface | Min:-2.9894643783569336e+01 Max:+5.3870561523437500e+03 RMS:+6.4442219321892003e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5312859958249614e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.6371386718750000e+02 RMS:+2.2054824502787593e+01 +skin_temperature_at_surface | Min:+2.1746235656738281e+02 Max:+3.2932260131835938e+02 RMS:+2.8737006087270038e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+5.8667091445155686e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.3549806522511076e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8026573181152344e+01 RMS:+1.9275201636346665e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.2045886230468750e+02 RMS:+2.8806776004459306e+02 +soilMoistureVolumetric | Min:+2.1923782303929329e-02 Max:+1.0000000000000000e+00 RMS:+8.6145451167852249e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.2327475547790527e+00 RMS:+1.5878111306662487e-01 +eastward_wind_at_surface | Min:-1.8106302261352539e+01 Max:+2.0922132492065430e+01 RMS:+5.2142386237867280e+00 +northward_wind_at_surface | Min:-2.0834318161010742e+01 Max:+1.9025196075439453e+01 RMS:+4.8322666159970842e+00 +f10m | Min:+9.3901658058166504e-01 Max:+1.0698120594024658e+00 RMS:+9.9592865511053685e-01 +---------------------------------------------------------------------------------------------------- + + + +Obs bias coefficients: +--------------------------------------------------------------- + constant: Min= -0.8381630182271099, Max= 0.8200770020481498, Norm= 2.2810923110282308 + lapseRate_order_2: Min= -0.2969009876260876, Max= 0.3889850080012900, Norm= 0.7014865852485521 + lapseRate: Min= -0.5954660177230082, Max= 1.6232719421370738, Norm= 2.1316868531033393 + emissivityJacobian: Min= -0.0097089996561411, Max= 8.3582897185072884, Norm= 10.2580018725806656 +sensorScanAngle_order_4: Min= -3.4036920070662289, Max= 0.8113600015621025, Norm= 4.8886281019448123 +sensorScanAngle_order_3: Min= -0.7697319984440882, Max= 0.3303030133246191, Norm= 0.9762309707883376 +sensorScanAngle_order_2: Min= -0.5401099920283099, Max= 2.2389800548543319, Norm= 2.4920946301939773 + sensorScanAngle: Min= -0.1069049984217430, Max= 0.4472059905526856, Norm= 0.8480380113023768 +--------------------------------------------------------------- + + + + + + +CostJb : Nonlinear Jb = 0.0000000000001377 +CostJo : Nonlinear Jo(Aircraft) = 605907.9700265740975738, nobs = 504555, Jo/n = 1.2008759600570287, err = 2.2437239435917040 +CostJo : Nonlinear Jo(ascatw_ascat_metop-b) = 15949.9364848986988363, nobs = 26314, Jo/n = 0.6061388038648133, err = 1.8277692518568445 +CostJo : Nonlinear Jo(ATMS N20) = 48387.7302149529932649, nobs = 156588, Jo/n = 0.3090130164185825, err = 5.2594000470964719 +CostJo : Nonlinear Jo(surface_ps) = 26308.1961930343022686, nobs = 107322, Jo/n = 0.2451333015880649, err = 593.0564342818018986 +CostJo : Nonlinear Jo(gnssrobndnbam) = 615018.9326265617273748, nobs = 473864, Jo/n = 1.2978806843874229, err = 0.0003293333037026 +CostJo : Nonlinear Jo(ompsnp_npp) = 1931.1242066182112467, nobs = 3087, Jo/n = 0.6255666364166541, err = 2.4001367423170068 +CostJo : Nonlinear Jo(ompstc_npp) = 1175.2354163386241908, nobs = 3696, Jo/n = 0.3179749503080693, err = 6.0000000000000000 +CostJo : Nonlinear Jo(satwind_goes-16) = 6938.3960383742578415, nobs = 193154, Jo/n = 0.0359215757290776, err = 11.8925417717229021 +CostFunction: Nonlinear J = 1321617.5212073526345193 +DRPCGMinimizer: reduction in residual norm = 0.8446076379600224 +CostFunction::addIncrement: Analysis: +---------------------------------------------------------------------------------------------------- +State print | number of fields = 22 | cube sphere face size: C96 +eastward_wind | Min:-8.7593299865597274e+01 Max:+1.1421906280413639e+02 RMS:+1.7446423933041416e+01 +northward_wind | Min:-9.0978759765544794e+01 Max:+8.9302459717076374e+01 RMS:+9.8048456518642482e+00 +air_temperature | Min:+1.7290483093261994e+02 Max:+3.1017132568402411e+02 RMS:+2.5022377762999653e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7837935791015625e+03 RMS:+9.5699700087025974e+02 +air_pressure_at_surface | Min:+5.1309082031248872e+04 Max:+1.0433011718749085e+05 RMS:+9.8914626690605888e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+9.9999986293294490e-10 Max:+2.1381899714479527e-02 RMS:+5.0230919069522385e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+5.7223520707173773e-04 RMS:+9.4296924828094189e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.6279185658369072e-03 RMS:+3.7809568286035265e-05 +ozone_mass_mixing_ratio | Min:+0.0000000000000000e+00 Max:+1.7393152519974760e-05 RMS:+4.4687802775349384e-06 +geopotential_height_at_surface | Min:-2.9894643783569336e+01 Max:+5.3870561523437500e+03 RMS:+6.4442219321892003e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5312859958249614e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.6371386718750000e+02 RMS:+2.2054824502787593e+01 +skin_temperature_at_surface | Min:+2.1746235656738281e+02 Max:+3.2932260131835938e+02 RMS:+2.8737006087270038e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+5.8667091445155686e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.3549806522511076e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8026573181152344e+01 RMS:+1.9275201636346665e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.2045886230468750e+02 RMS:+2.8806776004459306e+02 +soilMoistureVolumetric | Min:+2.1923782303929329e-02 Max:+1.0000000000000000e+00 RMS:+8.6145451167852249e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.2327475547790527e+00 RMS:+1.5878111306662487e-01 +eastward_wind_at_surface | Min:-1.8106302261352539e+01 Max:+2.0922132492065430e+01 RMS:+5.2142386237867280e+00 +northward_wind_at_surface | Min:-2.0834318161010742e+01 Max:+1.9025196075439453e+01 RMS:+4.8322666159970842e+00 +f10m | Min:+9.3901658058166504e-01 Max:+1.0698120594024658e+00 RMS:+9.9592865511053685e-01 +---------------------------------------------------------------------------------------------------- + + + +Obs bias coefficients: +--------------------------------------------------------------- + constant: Min= -0.8381630182312128, Max= 0.8200770020452602, Norm= 2.2810923110345662 + lapseRate_order_2: Min= -0.2969009876342316, Max= 0.3889850080009739, Norm= 0.7014865852476552 + lapseRate: Min= -0.5954660177223734, Max= 1.6232719421235957, Norm= 2.1316868530892328 + emissivityJacobian: Min= -0.0097089996561434, Max= 8.3582897174897202, Norm= 10.2580018711068170 +sensorScanAngle_order_4: Min= -3.4036920070781176, Max= 0.8113600015458797, Norm= 4.8886281019598847 +sensorScanAngle_order_3: Min= -0.7697319984481772, Max= 0.3303030133236201, Norm= 0.9762309707916220 +sensorScanAngle_order_2: Min= -0.5401099920369742, Max= 2.2389800548457712, Norm= 2.4920946301898259 + sensorScanAngle: Min= -0.1069049984223674, Max= 0.4472059905508586, Norm= 0.8480380112990616 +--------------------------------------------------------------- + + + + + + +CostJb : Nonlinear Jb = 0.0000000000008880 +CostJo : Nonlinear Jo(Aircraft) = 605907.9670297848060727, nobs = 504555, Jo/n = 1.2008759541175587, err = 2.2437239435917040 +CostJo : Nonlinear Jo(ascatw_ascat_metop-b) = 15949.9364826060973428, nobs = 26314, Jo/n = 0.6061388037776886, err = 1.8277692518568445 +CostJo : Nonlinear Jo(ATMS N20) = 48387.7301996692985995, nobs = 156588, Jo/n = 0.3090130163209780, err = 5.2594000470964719 +CostJo : Nonlinear Jo(surface_ps) = 26308.1961873747168283, nobs = 107322, Jo/n = 0.2451333015353303, err = 593.0564342818018986 +CostJo : Nonlinear Jo(gnssrobndnbam) = 615018.9323734971694648, nobs = 473864, Jo/n = 1.2978806838533781, err = 0.0003293333037026 +CostJo : Nonlinear Jo(ompsnp_npp) = 1105.2453930547394521, nobs = 3087, Jo/n = 0.3580321972966438, err = 2.4001367423170068 +CostJo : Nonlinear Jo(ompstc_npp) = 842.3521445536282499, nobs = 3696, Jo/n = 0.2279091300199211, err = 6.0000000000000000 +CostJo : Nonlinear Jo(satwind_goes-16) = 6938.3960374245170897, nobs = 193154, Jo/n = 0.0359215757241606, err = 11.8925417717229021 +CostFunction: Nonlinear J = 1320458.7558479649014771 diff --git a/test/testreference/C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref b/test/testreference/C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref new file mode 100644 index 000000000..103e05260 --- /dev/null +++ b/test/testreference/C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref @@ -0,0 +1,82 @@ +Background State for member 0: + +---------------------------------------------------------------------------------------------------- +State print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-8.4384330749511719e+01 Max:+1.1146717834472656e+02 RMS:+1.7423407399233511e+01 +northward_wind | Min:-8.6144805908203125e+01 Max:+8.9331993103027344e+01 RMS:+1.0017299694477177e+01 +air_temperature | Min:+1.7350303649902344e+02 Max:+3.0961535644531250e+02 RMS:+2.5015669840056216e+02 +air_pressure_at_surface | Min:+5.2320046875000000e+04 Max:+1.0452482812500000e+05 RMS:+9.8914997456124955e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+1.6847316430812498e-08 Max:+2.2395884618163109e-02 RMS:+5.0107896876815721e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+4.1855275048874319e-04 RMS:+1.0354889627583217e-05 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.3839458115398884e-03 RMS:+3.5588872198565466e-05 +ozone_mass_mixing_ratio | Min:+1.1339260641562987e-09 Max:+1.7277885490329936e-05 RMS:+4.4686682637740296e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +---------------------------------------------------------------------------------------------------- +JEDI Increment for member 0: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 8 | cube sphere face size: C48 +eastward_wind | Min:-2.6713170463703555e+01 Max:+2.7247719731829164e+01 RMS:+7.7003410130506966e-01 +northward_wind | Min:-2.2266548354929135e+01 Max:+2.4111106836816546e+01 RMS:+7.7874592260732178e-01 +air_temperature | Min:-1.0204740456386372e+01 Max:+1.0612363461439131e+01 RMS:+3.2383456606394428e-01 +air_pressure_at_surface | Min:-1.6632427368676872e-03 Max:+1.3842245934938546e-03 RMS:+8.3556099392947144e-05 +water_vapor_mixing_ratio_wrt_moist_air | Min:-1.0075023053001828e-02 Max:+1.3216991071147419e-02 RMS:+1.3161159034094137e-04 +cloud_liquid_ice | Min:-3.2384493993478425e-04 Max:+2.5782120798697029e-04 RMS:+3.5186992249237140e-06 +cloud_liquid_water | Min:-1.3410840615217380e-03 Max:+1.0793991164780980e-03 RMS:+1.2675198989331570e-05 +ozone_mass_mixing_ratio | Min:-1.7321578649115885e-06 Max:+2.2122365151317159e-06 RMS:+3.4501654041399942e-08 +---------------------------------------------------------------------------------------------------- +FV3 Increment for member 0: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-2.6713170463703555e+01 Max:+2.7247719731829164e+01 RMS:+7.7003410130506966e-01 +northward_wind | Min:-2.2266548354929135e+01 Max:+2.4111106836816546e+01 RMS:+7.7874592260732178e-01 +air_temperature | Min:-1.0204740456386372e+01 Max:+1.0612363461439131e+01 RMS:+3.2383456606394428e-01 +water_vapor_mixing_ratio_wrt_moist_air | Min:-1.0075023053001828e-02 Max:+1.3216991071147419e-02 RMS:+1.3161159034094137e-04 +cloud_liquid_ice | Min:-3.2384493993478425e-04 Max:+2.5782120798697029e-04 RMS:+3.5186992249237140e-06 +cloud_liquid_water | Min:-1.3410840615217380e-03 Max:+1.0793991164780980e-03 RMS:+1.2675198989331570e-05 +ozone_mass_mixing_ratio | Min:-1.7321578649115885e-06 Max:+2.2122365151317159e-06 RMS:+3.4501654041399942e-08 +air_pressure_thickness | Min:-3.7230194720905274e-05 Max:+3.0984621844254434e-05 RMS:+9.4295307947072803e-07 +layer_thickness | Min:-5.0314572597610095e+01 Max:+3.1207257614340051e+01 RMS:+6.5903625246599373e-01 +---------------------------------------------------------------------------------------------------- +Background State for member 1: + +---------------------------------------------------------------------------------------------------- +State print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-8.5966735839843750e+01 Max:+1.1211631774902344e+02 RMS:+1.7425666524535583e+01 +northward_wind | Min:-8.5594192504882812e+01 Max:+8.9450973510742188e+01 RMS:+1.0012910607932993e+01 +air_temperature | Min:+1.7322386169433594e+02 Max:+3.1173611450195312e+02 RMS:+2.5015480177211401e+02 +air_pressure_at_surface | Min:+5.2300289062500000e+04 Max:+1.0443091406250000e+05 RMS:+9.8912612346289476e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+1.7588122958045460e-08 Max:+2.1704806014895439e-02 RMS:+4.9960608009716814e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+4.2980920989066362e-04 RMS:+9.7698907168770129e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.4689513482153416e-03 RMS:+3.5167035611299903e-05 +ozone_mass_mixing_ratio | Min:+2.9807353807420611e-10 Max:+1.7195472537423484e-05 RMS:+4.4692040486361164e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +---------------------------------------------------------------------------------------------------- +JEDI Increment for member 1: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 8 | cube sphere face size: C48 +eastward_wind | Min:-2.7118603154153071e+01 Max:+2.5039255461317936e+01 RMS:+7.9016696986758683e-01 +northward_wind | Min:-1.9134521911266908e+01 Max:+1.8052220490594621e+01 RMS:+8.1416259656824774e-01 +air_temperature | Min:-1.0334410919697632e+01 Max:+1.0023267385714213e+01 RMS:+3.2993662752227909e-01 +air_pressure_at_surface | Min:-1.7015457730735761e-03 Max:+1.4328894367281464e-03 RMS:+8.3597529649529631e-05 +water_vapor_mixing_ratio_wrt_moist_air | Min:-1.0940498213010061e-02 Max:+1.4176037926216224e-02 RMS:+1.3345901067359821e-04 +cloud_liquid_ice | Min:-2.7333859171390946e-04 Max:+4.8852641654798684e-04 RMS:+3.6400194778040982e-06 +cloud_liquid_water | Min:-1.1354531767787950e-03 Max:+1.0641496243961217e-03 RMS:+1.3080375599165519e-05 +ozone_mass_mixing_ratio | Min:-1.8008616277179968e-06 Max:+2.4391037763833551e-06 RMS:+3.6841977469037158e-08 +---------------------------------------------------------------------------------------------------- +FV3 Increment for member 1: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-2.7118603154153071e+01 Max:+2.5039255461317936e+01 RMS:+7.9016696986758683e-01 +northward_wind | Min:-1.9134521911266908e+01 Max:+1.8052220490594621e+01 RMS:+8.1416259656824774e-01 +air_temperature | Min:-1.0334410919697632e+01 Max:+1.0023267385714213e+01 RMS:+3.2993662752227909e-01 +water_vapor_mixing_ratio_wrt_moist_air | Min:-1.0940498213010061e-02 Max:+1.4176037926216224e-02 RMS:+1.3345901067359821e-04 +cloud_liquid_ice | Min:-2.7333859171390946e-04 Max:+4.8852641654798684e-04 RMS:+3.6400194778040982e-06 +cloud_liquid_water | Min:-1.1354531767787950e-03 Max:+1.0641496243961217e-03 RMS:+1.3080375599165519e-05 +ozone_mass_mixing_ratio | Min:-1.8008616277179968e-06 Max:+2.4391037763833551e-06 RMS:+3.6841977469037158e-08 +air_pressure_thickness | Min:-3.8087571738287807e-05 Max:+3.2073941838461906e-05 RMS:+9.4342063209947081e-07 +layer_thickness | Min:-4.7521592877819785e+01 Max:+3.1680899109200254e+01 RMS:+6.5375317024288038e-01 +---------------------------------------------------------------------------------------------------- diff --git a/test/testreference/C96C48_ufs_hybatmDA_lgetkf_observer.ref b/test/testreference/C96C48_ufs_hybatmDA_lgetkf_observer.ref new file mode 100644 index 000000000..e85f63696 --- /dev/null +++ b/test/testreference/C96C48_ufs_hybatmDA_lgetkf_observer.ref @@ -0,0 +1,126 @@ +Initial state for member 1: +---------------------------------------------------------------------------------------------------- +State print | number of fields = 23 | cube sphere face size: C48 +eastward_wind | Min:-8.4384330749511719e+01 Max:+1.1146717834472656e+02 RMS:+1.7423407399233511e+01 +northward_wind | Min:-8.6144805908203125e+01 Max:+8.9331993103027344e+01 RMS:+1.0017299694477179e+01 +air_temperature | Min:+1.7350303649902344e+02 Max:+3.0961535644531250e+02 RMS:+2.5015669840056216e+02 +layer_thickness | Min:-3.0059777832031250e+03 Max:-1.6207923889160156e+01 RMS:+9.8503674614826332e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7881016845703125e+03 RMS:+9.5698921151558159e+02 +air_pressure_at_surface | Min:+5.2320046875000000e+04 Max:+1.0452482812500000e+05 RMS:+9.8914997456124955e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+1.6847316430812498e-08 Max:+2.2395884618163109e-02 RMS:+5.0107896876815721e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+4.1855275048874319e-04 RMS:+1.0354889627583219e-05 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.3839458115398884e-03 RMS:+3.5588872198565459e-05 +ozone_mass_mixing_ratio | Min:+1.1339260641562987e-09 Max:+1.7277885490329936e-05 RMS:+4.4686682637740296e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5462209907135938e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.5217851257324219e+02 RMS:+2.2019818126018798e+01 +skin_temperature_at_surface | Min:+2.1759780883789062e+02 Max:+3.2456860351562500e+02 RMS:+2.8741259834843908e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+6.1246929250310931e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.5755536879077185e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8551864624023438e+01 RMS:+2.0170282476619530e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.1568060302734375e+02 RMS:+2.8817196445239324e+02 +soilMoistureVolumetric | Min:+2.1992070600390434e-02 Max:+1.0000000000000000e+00 RMS:+8.4975035958924516e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.0927191972732544e+00 RMS:+1.5092084570439257e-01 +eastward_wind_at_surface | Min:-1.8143459320068359e+01 Max:+2.0627843856811523e+01 RMS:+5.1169707890467366e+00 +northward_wind_at_surface | Min:-2.3821027755737305e+01 Max:+1.9497446060180664e+01 RMS:+4.8067548196805943e+00 +f10m | Min:+9.4103527069091797e-01 Max:+1.0685453414916992e+00 RMS:+9.9573423073115486e-01 +---------------------------------------------------------------------------------------------------- +Initial state for member 2: +---------------------------------------------------------------------------------------------------- +State print | number of fields = 23 | cube sphere face size: C48 +eastward_wind | Min:-8.5966735839843750e+01 Max:+1.1211631774902344e+02 RMS:+1.7425666524535583e+01 +northward_wind | Min:-8.5594192504882812e+01 Max:+8.9450973510742188e+01 RMS:+1.0012910607932993e+01 +air_temperature | Min:+1.7322386169433594e+02 Max:+3.1173611450195312e+02 RMS:+2.5015480177211401e+02 +layer_thickness | Min:-3.0079758300781250e+03 Max:-1.6234376907348633e+01 RMS:+9.8509317417150282e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7860076904296875e+03 RMS:+9.5696337286916196e+02 +air_pressure_at_surface | Min:+5.2300289062500000e+04 Max:+1.0443091406250000e+05 RMS:+9.8912612346289476e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+1.7588122958045460e-08 Max:+2.1704806014895439e-02 RMS:+4.9960608009716806e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+4.2980920989066362e-04 RMS:+9.7698907168770146e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.4689513482153416e-03 RMS:+3.5167035611299903e-05 +ozone_mass_mixing_ratio | Min:+2.9807353807420611e-10 Max:+1.7195472537423484e-05 RMS:+4.4692040486361164e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5462209907135938e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.4906845092773438e+02 RMS:+2.2004970461687567e+01 +skin_temperature_at_surface | Min:+2.1673643493652344e+02 Max:+3.2559057617187500e+02 RMS:+2.8745909600453388e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+6.1246929250310931e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.5755536879077185e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8551864624023438e+01 RMS:+2.0170282476619530e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.1603344726562500e+02 RMS:+2.8817511849953127e+02 +soilMoistureVolumetric | Min:+2.1997468546032906e-02 Max:+1.0000000000000000e+00 RMS:+8.4973303187978066e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.0929538011550903e+00 RMS:+1.5094966458993353e-01 +eastward_wind_at_surface | Min:-1.9632795333862305e+01 Max:+2.2031156539916992e+01 RMS:+5.1474973436096771e+00 +northward_wind_at_surface | Min:-2.2859689712524414e+01 Max:+1.9478809356689453e+01 RMS:+4.7531537396512338e+00 +f10m | Min:+9.4079720973968506e-01 Max:+1.0689357519149780e+00 RMS:+9.9569948613238035e-01 +---------------------------------------------------------------------------------------------------- +H(x) for member 1: +Aircraft nobs= 502771 Min=-80.55443499910179, Max=305.5072533751332, RMS=146.5850485230079 + +ascatw_ascat_metop-b nobs= 24988 Min=-14.90743210285059, Max=18.50735802131708, RMS=5.626101623328659 + +ATMS N20 nobs= 17107090 Min=129.7859007557375, Max=294.7571288275636, RMS=237.7675940436646 + +surface_ps nobs= 199096 Min=481.5556154686088, Max=106952.1342381349, RMS=94358.04308199322 + +gnssrobndnbam nobs= 792394 Min=3.54653995010946e-06, Max=0.05689811581521509, RMS=0.00729813001231048 + +ompsnp_npp nobs= 3652 Min=0.02233893266611933, Max=544.9735566336279, RMS=74.39666518228908 + +ompstc_npp nobs= 29925 Min=232.08666141862, Max=578.874275460677, RMS=330.1687050473581 + +satwind_goes-16 nobs= 192150 Min=-46.72026247379588, Max=73.49080322835941, RMS=13.50004896322415 + + +H(x) for member 2: +Aircraft nobs= 502771 Min=-83.52929132190421, Max=303.935382876328, RMS=146.5832501835669 + +ascatw_ascat_metop-b nobs= 24988 Min=-15.95012800292468, Max=19.32845599082289, RMS=5.590280602334444 + +ATMS N20 nobs= 17107090 Min=129.5870694672627, Max=294.7645909817928, RMS=237.7536249801317 + +surface_ps nobs= 199096 Min=475.424805046184, Max=106814.5789947868, RMS=94338.64524856347 + +gnssrobndnbam nobs= 792394 Min=3.535338326285228e-06, Max=0.05521000303350442, RMS=0.007290866963061116 + +ompsnp_npp nobs= 3652 Min=0.02236964099830396, Max=551.3730864849784, RMS=74.49227809990998 + +ompstc_npp nobs= 29925 Min=232.3157492522477, Max=581.8884351421542, RMS=330.2400711699158 + +satwind_goes-16 nobs= 192150 Min=-45.04364111939185, Max=72.45210083322863, RMS=13.31321129007812 + + +H(x) ensemble background mean: +Aircraft nobs= 670256 Min=-82.041863160503, Max=304.2592158533807, RMS=127.3605543707548 + +ascatw_ascat_metop-b nobs= 241220 Min=-15.81413469653508, Max=19.88922395519342, RMS=5.523473979723838 + +ATMS N20 nobs= 17107090 Min=129.6864851115001, Max=294.7608599046782, RMS=237.7603500470373 + +surface_ps nobs= 199096 Min=486.4346696969737, Max=106883.3566164608, RMS=94348.33691646729 + +gnssrobndnbam nobs= 792394 Min=3.540939138197344e-06, Max=0.04945358726186298, RMS=0.007290515506537144 + +ompsnp_npp nobs= 3652 Min=0.02235738516446045, Max=548.1733215593032, RMS=74.44382038546588 + +ompstc_npp nobs= 29925 Min=232.3457460802846, Max=580.3706053589909, RMS=330.2028035413688 + +satwind_goes-16 nobs= 1605788 Min=-48.18299380448379, Max=74.78775267937297, RMS=10.02015189273681 + + +background y - H(x): +Aircraft nobs= 514449 Min=-244.1546176605621, Max=114.0538314416612, RMS=3.825505485330922 + +ascatw_ascat_metop-b nobs= 241220 Min=-15.53489644753131, Max=19.32628866297402, RMS=2.327498313731722 + +ATMS N20 nobs= 17107090 Min=-139.4066954833384, Max=99999997810.8074, RMS=5096987910.765858 + +surface_ps nobs= 116459 Min=-101684.8005703992, Max=75903.15428094343, RMS=2988.11265787499 + +gnssrobndnbam nobs= 791231 Min=-0.0302615994327759, Max=0.01662471709650585, RMS=0.0008693038108764198 + +ompsnp_npp nobs= 3652 Min=-30.64844591762643, Max=60.86103708368728, RMS=3.943997228450417 + +ompstc_npp nobs= 28934 Min=-98.77455818390638, Max=716.7959660681558, RMS=17.05887006514246 + +satwind_goes-16 nobs= 1605788 Min=-51.62964751676423, Max=38.23192217860554, RMS=3.10218655904646 + + diff --git a/test/testreference/C96C48_ufs_hybatmDA_lgetkf_solver.ref b/test/testreference/C96C48_ufs_hybatmDA_lgetkf_solver.ref new file mode 100644 index 000000000..7c07c4dfa --- /dev/null +++ b/test/testreference/C96C48_ufs_hybatmDA_lgetkf_solver.ref @@ -0,0 +1,180 @@ +Initial state for member 1: +---------------------------------------------------------------------------------------------------- +State print | number of fields = 23 | cube sphere face size: C48 +eastward_wind | Min:-8.4384330749511719e+01 Max:+1.1146717834472656e+02 RMS:+1.7423407399233511e+01 +northward_wind | Min:-8.6144805908203125e+01 Max:+8.9331993103027344e+01 RMS:+1.0017299694477179e+01 +air_temperature | Min:+1.7350303649902344e+02 Max:+3.0961535644531250e+02 RMS:+2.5015669840056216e+02 +layer_thickness | Min:-3.0059777832031250e+03 Max:-1.6207923889160156e+01 RMS:+9.8503674614826332e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7881016845703125e+03 RMS:+9.5698921151558159e+02 +air_pressure_at_surface | Min:+5.2320046875000000e+04 Max:+1.0452482812500000e+05 RMS:+9.8914997456124955e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+1.6847316430812498e-08 Max:+2.2395884618163109e-02 RMS:+5.0107896876815721e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+4.1855275048874319e-04 RMS:+1.0354889627583219e-05 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.3839458115398884e-03 RMS:+3.5588872198565459e-05 +ozone_mass_mixing_ratio | Min:+1.1339260641562987e-09 Max:+1.7277885490329936e-05 RMS:+4.4686682637740296e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5462209907135938e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.5217851257324219e+02 RMS:+2.2019818126018798e+01 +skin_temperature_at_surface | Min:+2.1759780883789062e+02 Max:+3.2456860351562500e+02 RMS:+2.8741259834843908e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+6.1246929250310931e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.5755536879077185e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8551864624023438e+01 RMS:+2.0170282476619530e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.1568060302734375e+02 RMS:+2.8817196445239324e+02 +soilMoistureVolumetric | Min:+2.1992070600390434e-02 Max:+1.0000000000000000e+00 RMS:+8.4975035958924516e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.0927191972732544e+00 RMS:+1.5092084570439257e-01 +eastward_wind_at_surface | Min:-1.8143459320068359e+01 Max:+2.0627843856811523e+01 RMS:+5.1169707890467366e+00 +northward_wind_at_surface | Min:-2.3821027755737305e+01 Max:+1.9497446060180664e+01 RMS:+4.8067548196805943e+00 +f10m | Min:+9.4103527069091797e-01 Max:+1.0685453414916992e+00 RMS:+9.9573423073115486e-01 +---------------------------------------------------------------------------------------------------- +Initial state for member 2: +---------------------------------------------------------------------------------------------------- +State print | number of fields = 23 | cube sphere face size: C48 +eastward_wind | Min:-8.5966735839843750e+01 Max:+1.1211631774902344e+02 RMS:+1.7425666524535583e+01 +northward_wind | Min:-8.5594192504882812e+01 Max:+8.9450973510742188e+01 RMS:+1.0012910607932993e+01 +air_temperature | Min:+1.7322386169433594e+02 Max:+3.1173611450195312e+02 RMS:+2.5015480177211401e+02 +layer_thickness | Min:-3.0079758300781250e+03 Max:-1.6234376907348633e+01 RMS:+9.8509317417150282e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7860076904296875e+03 RMS:+9.5696337286916196e+02 +air_pressure_at_surface | Min:+5.2300289062500000e+04 Max:+1.0443091406250000e+05 RMS:+9.8912612346289476e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+1.7588122958045460e-08 Max:+2.1704806014895439e-02 RMS:+4.9960608009716806e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+4.2980920989066362e-04 RMS:+9.7698907168770146e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.4689513482153416e-03 RMS:+3.5167035611299903e-05 +ozone_mass_mixing_ratio | Min:+2.9807353807420611e-10 Max:+1.7195472537423484e-05 RMS:+4.4692040486361164e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5462209907135938e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.4906845092773438e+02 RMS:+2.2004970461687567e+01 +skin_temperature_at_surface | Min:+2.1673643493652344e+02 Max:+3.2559057617187500e+02 RMS:+2.8745909600453388e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+6.1246929250310931e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.5755536879077185e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8551864624023438e+01 RMS:+2.0170282476619530e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.1603344726562500e+02 RMS:+2.8817511849953127e+02 +soilMoistureVolumetric | Min:+2.1997468546032906e-02 Max:+1.0000000000000000e+00 RMS:+8.4973303187978066e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.0929538011550903e+00 RMS:+1.5094966458993353e-01 +eastward_wind_at_surface | Min:-1.9632795333862305e+01 Max:+2.2031156539916992e+01 RMS:+5.1474973436096771e+00 +northward_wind_at_surface | Min:-2.2859689712524414e+01 Max:+1.9478809356689453e+01 RMS:+4.7531537396512338e+00 +f10m | Min:+9.4079720973968506e-01 Max:+1.0689357519149780e+00 RMS:+9.9569948613238035e-01 +---------------------------------------------------------------------------------------------------- +H(x) for member 1: +Aircraft nobs= 502771 Min=-80.55443572998047, Max=305.5072631835938, RMS=146.5850485206547 + +ascatw_ascat_metop-b nobs= 24988 Min=-14.90743255615234, Max=18.50735855102539, RMS=5.626101621409232 + +ATMS N20 nobs= 17107090 Min=129.7859039306641, Max=294.7571411132812, RMS=237.7675940456118 + +surface_ps nobs= 199096 Min=481.5556030273438, Max=106952.1328125, RMS=94358.04310219502 + +gnssrobndnbam nobs= 792394 Min=3.546540028764866e-06, Max=0.05689811706542969, RMS=0.007298130011564753 + +ompsnp_npp nobs= 3652 Min=0.02233893238008022, Max=544.9735717773438, RMS=74.39666527674214 + +ompstc_npp nobs= 29925 Min=232.0866546630859, Max=578.874267578125, RMS=330.1687049872166 + +satwind_goes-16 nobs= 192150 Min=-46.72026062011719, Max=73.49080657958984, RMS=13.50004896377961 + + +H(x) for member 2: +Aircraft nobs= 502771 Min=-83.52928924560547, Max=303.9353942871094, RMS=146.5832501984888 + +ascatw_ascat_metop-b nobs= 24988 Min=-15.95012760162354, Max=19.32845687866211, RMS=5.590280603593994 + +ATMS N20 nobs= 17107090 Min=129.5870666503906, Max=294.7645874023438, RMS=237.7536249814979 + +surface_ps nobs= 199096 Min=475.4248046875, Max=106814.578125, RMS=94338.64525474468 + +gnssrobndnbam nobs= 792394 Min=3.53533823727048e-06, Max=0.05521000176668167, RMS=0.007290866961668531 + +ompsnp_npp nobs= 3652 Min=0.02236964181065559, Max=551.3731079101562, RMS=74.49227830514708 + +ompstc_npp nobs= 29925 Min=232.3157501220703, Max=581.888427734375, RMS=330.2400711798879 + +satwind_goes-16 nobs= 192150 Min=-45.04364013671875, Max=72.45210266113281, RMS=13.31321128986013 + + +H(x) ensemble background mean: +Aircraft nobs= 502771 Min=-82.04186248779297, Max=304.2592163085938, RMS=146.582395066166 + +ascatw_ascat_metop-b nobs= 24988 Min=-15.35133123397827, Max=18.91790771484375, RMS=5.590053671147163 + +ATMS N20 nobs= 17107090 Min=129.6864852905273, Max=294.7608642578125, RMS=237.7603500486925 + +surface_ps nobs= 199096 Min=486.4346618652344, Max=106883.35546875, RMS=94348.33692965737 + +gnssrobndnbam nobs= 792394 Min=3.540939133017673e-06, Max=0.04945358820259571, RMS=0.007290515505449794 + +ompsnp_npp nobs= 3652 Min=0.02235738560557365, Max=548.17333984375, RMS=74.44382053535134 + +ompstc_npp nobs= 29925 Min=232.3457412719727, Max=580.37060546875, RMS=330.2028035163413 + +satwind_goes-16 nobs= 192150 Min=-45.88195037841797, Max=72.75027465820312, RMS=13.36167441823028 + + +background y - H(x): +Aircraft nobs= 502771 Min=-18.89637756347656, Max=18.92713928222656, RMS=3.217299765305571 + +ascatw_ascat_metop-b nobs= 24988 Min=-4.990096844732761, Max=4.997781611979008, RMS=1.78136290653079 + +ATMS N20 nobs= 17107090 Min=-139.4066925048828, Max=99999997810.8074, RMS=5096987910.765857 + +surface_ps nobs= 116459 Min=-101684.80078125, Max=75903.154296875, RMS=2988.112660654301 + +gnssrobndnbam nobs= 791231 Min=-0.03026160039007664, Max=0.01662471704185009, RMS=0.000869303809760421 + +ompsnp_npp nobs= 3652 Min=-30.64844512939453, Max=60.86103820800781, RMS=3.943997189932038 + +ompstc_npp nobs= 28934 Min=-98.7745361328125, Max=716.7959594726562, RMS=17.05887006085864 + +satwind_goes-16 nobs= 192150 Min=-17.58694839477539, Max=18.68439626693726, RMS=3.267043143712932 + + +Background mean : +---------------------------------------------------------------------------------------------------- +State print | number of fields = 23 | cube sphere face size: C48 +eastward_wind | Min:-8.5175533294677734e+01 Max:+1.1179174804687500e+02 RMS:+1.7400557939433298e+01 +northward_wind | Min:-8.5735511779785156e+01 Max:+8.9157825469970703e+01 RMS:+9.9701645189144461e+00 +air_temperature | Min:+1.7338398742675781e+02 Max:+3.1067573547363281e+02 RMS:+2.5015547362929473e+02 +layer_thickness | Min:-3.0054658203125000e+03 Max:-1.6221150398254395e+01 RMS:+9.8506306362137718e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7870546875000000e+03 RMS:+9.5697619937906575e+02 +air_pressure_at_surface | Min:+5.2310167968750000e+04 Max:+1.0447787109375000e+05 RMS:+9.8913797930278190e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+2.9691944014587079e-08 Max:+2.1115131676197052e-02 RMS:+4.9994705712860729e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+3.6185300268698484e-04 RMS:+9.3862057121105856e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.2367462622933090e-03 RMS:+3.1415946634547486e-05 +ozone_mass_mixing_ratio | Min:+7.5237392704874395e-10 Max:+1.7233576727448963e-05 RMS:+4.4688532813447449e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5462209907135938e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.4910437774658203e+02 RMS:+2.2007651817656669e+01 +skin_temperature_at_surface | Min:+2.1716712188720703e+02 Max:+3.2174871826171875e+02 RMS:+2.8743544448926787e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+6.1246929250310931e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.5755536879077185e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8551864624023438e+01 RMS:+2.0170282476619530e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.1577014160156250e+02 RMS:+2.8817349407786276e+02 +soilMoistureVolumetric | Min:+2.1994769573211670e-02 Max:+1.0000000000000000e+00 RMS:+8.4973696890011863e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.0928364992141724e+00 RMS:+1.5091512135815568e-01 +eastward_wind_at_surface | Min:-1.8888127326965332e+01 Max:+2.1329500198364258e+01 RMS:+5.1094029653114390e+00 +northward_wind_at_surface | Min:-2.3228111267089844e+01 Max:+1.8953988075256348e+01 RMS:+4.7537442465404594e+00 +f10m | Min:+9.4170856475830078e-01 Max:+1.0687405467033386e+00 RMS:+9.9571647867703006e-01 +---------------------------------------------------------------------------------------------------- +Analysis mean : +---------------------------------------------------------------------------------------------------- +State print | number of fields = 23 | cube sphere face size: C48 +eastward_wind | Min:-8.4774324321502988e+01 Max:+1.1170619450293722e+02 RMS:+1.7400375509763755e+01 +northward_wind | Min:-8.7214121288366655e+01 Max:+8.9233807495233577e+01 RMS:+9.9938074328966984e+00 +air_temperature | Min:+1.7338398731904834e+02 Max:+3.1021734492129713e+02 RMS:+2.5015182619184384e+02 +layer_thickness | Min:-3.0054658092822870e+03 Max:-1.6234013903099573e+01 RMS:+9.8506487778080520e+02 +air_pressure_thickness | Min:+6.0599988698959351e-01 Max:+1.7869309532732013e+03 RMS:+9.5697423778426378e+02 +air_pressure_at_surface | Min:+5.2310167956090001e+04 Max:+1.0447787101137359e+05 RMS:+9.8913797926518338e+04 +water_vapor_mixing_ratio_wrt_moist_air | Min:+0.0000000000000000e+00 Max:+2.1115131089317944e-02 RMS:+4.9974721017221301e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+4.4276663301760246e-04 RMS:+9.6220406276590353e-06 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.3226195416814611e-03 RMS:+3.3209346549199534e-05 +ozone_mass_mixing_ratio | Min:+1.0218316416270972e-09 Max:+1.7364107739907706e-05 RMS:+4.4689530099725226e-06 +geopotential_height_at_surface | Min:-2.7018375396728516e+01 Max:+5.2697558593750000e+03 RMS:+6.3772571434211386e+02 +slmsk | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+00 RMS:+6.5462209907135938e-01 +sheleg | Min:+0.0000000000000000e+00 Max:+2.4910437774658203e+02 RMS:+2.2007651817656669e+01 +skin_temperature_at_surface | Min:+2.1716712188720703e+02 Max:+3.2174871826171875e+02 RMS:+2.8743544448926787e+02 +vtype | Min:+0.0000000000000000e+00 Max:+2.0000000000000000e+01 RMS:+6.1246929250310931e+00 +stype | Min:+0.0000000000000000e+00 Max:+1.6000000000000000e+01 RMS:+4.5755536879077185e+00 +vfrac | Min:+0.0000000000000000e+00 Max:+9.8551864624023438e+01 RMS:+2.0170282476619530e+01 +stc | Min:+2.0000000000000000e+02 Max:+3.1577014160156250e+02 RMS:+2.8817349407786276e+02 +soilMoistureVolumetric | Min:+2.1994769573211670e-02 Max:+1.0000000000000000e+00 RMS:+8.4973696890011863e-01 +totalSnowDepthMeters | Min:+0.0000000000000000e+00 Max:+1.0928364992141724e+00 RMS:+1.5091512135815568e-01 +eastward_wind_at_surface | Min:-1.8888127326965332e+01 Max:+2.1329500198364258e+01 RMS:+5.1094029653114390e+00 +northward_wind_at_surface | Min:-2.3228111267089844e+01 Max:+1.8953988075256348e+01 RMS:+4.7537442465404594e+00 +f10m | Min:+9.4170856475830078e-01 Max:+1.0687405467033386e+00 RMS:+9.9571647867703006e-01 +---------------------------------------------------------------------------------------------------- diff --git a/test/testreference/atm_jjob_3dvar-fv3inc.ref b/test/testreference/atm_jjob_3dvar-fv3inc.ref new file mode 100644 index 000000000..98a94646b --- /dev/null +++ b/test/testreference/atm_jjob_3dvar-fv3inc.ref @@ -0,0 +1,41 @@ +Background State: + +---------------------------------------------------------------------------------------------------- +State print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-5.5495644220059390e+01 Max:+8.4934651204487366e+01 RMS:+1.6388250288532191e+01 +northward_wind | Min:-7.3712421229093422e+01 Max:+7.6984825502186652e+01 RMS:+8.1424144891567511e+00 +air_temperature | Min:+1.7482158077318496e+02 Max:+3.1467235233685437e+02 RMS:+2.4978424883064508e+02 +surface_pressure | Min:+5.3298485514404747e+04 Max:+1.0398027192902798e+05 RMS:+9.8897229693652524e+04 +specific_humidity | Min:+1.2691624667179020e-08 Max:+2.0041369334954085e-02 RMS:+4.7792638023125686e-03 +cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+1.2024392024662985e-03 RMS:+1.4396968866569995e-05 +cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.5935686618789048e-03 RMS:+4.1931345590543333e-05 +ozone_mass_mixing_ratio | Min:+1.1998327271379204e-08 Max:+1.7808431790670831e-05 RMS:+4.4947917149861064e-06 +surface_geopotential_height | Min:-2.7018394470214844e+01 Max:+5.2697460937500000e+03 RMS:+6.3032575784066080e+02 +---------------------------------------------------------------------------------------------------- +JEDI Increment: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 8 | cube sphere face size: C48 +eastward_wind | Min:-4.9503077015344843e-07 Max:+7.0838511279092131e-07 RMS:+2.4490899978286723e-09 +northward_wind | Min:-7.2703516684757830e-07 Max:+2.8853321110133834e-07 RMS:+2.1376104971902294e-09 +air_temperature | Min:-2.1723477061641461e-07 Max:+6.5020122974601691e-07 RMS:+1.0998492962503341e-08 +surface_pressure | Min:-7.8580342233181000e-10 Max:+3.2014213502407074e-10 RMS:+1.5159255545534699e-11 +specific_humidity | Min:-6.7425976452941262e-04 Max:+7.2974731745455677e-04 RMS:+2.1043490698817701e-06 +cloud_liquid_ice | Min:-2.7736911125384438e-06 Max:+5.0834107240617123e-07 RMS:+4.7607939912271645e-08 +cloud_liquid_water | Min:-3.7332445167104997e-04 Max:+3.4355489504058373e-04 RMS:+3.0033170533500212e-06 +ozone_mass_mixing_ratio | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 +---------------------------------------------------------------------------------------------------- +FV3 Increment: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-4.9503077015344843e-07 Max:+7.0838511279092131e-07 RMS:+2.4490899978286723e-09 +northward_wind | Min:-7.2703516684757830e-07 Max:+2.8853321110133834e-07 RMS:+2.1376104971902294e-09 +air_temperature | Min:-2.1723477061641461e-07 Max:+6.5020122974601691e-07 RMS:+1.0998492962503341e-08 +specific_humidity | Min:-6.7425976452941262e-04 Max:+7.2974731745455677e-04 RMS:+2.1043490698817701e-06 +cloud_liquid_ice | Min:-2.7736911125384438e-06 Max:+5.0834107240617123e-07 RMS:+4.7607939912271645e-08 +cloud_liquid_water | Min:-3.7332445167104997e-04 Max:+3.4355489504058373e-04 RMS:+3.0033170533500212e-06 +ozone_mass_mixing_ratio | Min:+0.0000000000000000e+00 Max:+0.0000000000000000e+00 RMS:+0.0000000000000000e+00 +air_pressure_thickness | Min:-2.9103830456733704e-11 Max:+2.9103830456733704e-11 RMS:+3.3056019160193798e-13 +layer_thickness | Min:-1.0638235174337751e-01 Max:+1.0329449278924585e-01 RMS:+2.8485086711777381e-04 +---------------------------------------------------------------------------------------------------- diff --git a/test/atm/global-workflow/3dvar.ref b/test/testreference/atm_jjob_3dvar.ref similarity index 100% rename from test/atm/global-workflow/3dvar.ref rename to test/testreference/atm_jjob_3dvar.ref diff --git a/test/testreference/atm_jjob_lgetkf-fv3inc.ref b/test/testreference/atm_jjob_lgetkf-fv3inc.ref new file mode 100644 index 000000000..2c8fed453 --- /dev/null +++ b/test/testreference/atm_jjob_lgetkf-fv3inc.ref @@ -0,0 +1,123 @@ +Background State for member 0: + +---------------------------------------------------------------------------------------------------- +State print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-5.1619864857418477e+01 Max:+8.6812084442971653e+01 RMS:+1.5983411875766325e+01 +northward_wind | Min:-7.3094846805319690e+01 Max:+7.0353817207582651e+01 RMS:+7.7265473774262041e+00 +air_temperature | Min:+1.7646396818493386e+02 Max:+3.1441817730817547e+02 RMS:+2.4989439192167012e+02 +surface_pressure | Min:+5.3259705655314101e+04 Max:+1.0392378167916714e+05 RMS:+9.8893465602866549e+04 +specific_humidity | Min:+9.5164908108891825e-09 Max:+2.0222136340880194e-02 RMS:+4.8552459174929334e-03 +cloud_liquid_ice | Min:-1.3545705512023003e-20 Max:+6.7304686933261399e-04 RMS:+1.0726563909939355e-05 +cloud_liquid_water | Min:-5.4244251425755909e-20 Max:+1.2879383569881558e-03 RMS:+3.8382491358281577e-05 +ozone_mass_mixing_ratio | Min:+2.9375003505643131e-08 Max:+1.8014885502109894e-05 RMS:+4.4946424525503736e-06 +surface_geopotential_height | Min:-2.7018394470214844e+01 Max:+5.2697460937500000e+03 RMS:+6.3032575784066080e+02 +---------------------------------------------------------------------------------------------------- +JEDI Increment for member 0: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 8 | cube sphere face size: C48 +eastward_wind | Min:-1.7416909136434541e+01 Max:+1.8325867271120192e+01 RMS:+7.2689113073983769e-01 +northward_wind | Min:-1.5335235321425948e+01 Max:+2.1574447615122054e+01 RMS:+7.1328003377466020e-01 +air_temperature | Min:-8.6048230478038406e+00 Max:+8.1497937417599609e+00 RMS:+3.1081395800884187e-01 +surface_pressure | Min:-4.9202937637815580e-04 Max:+8.7924188102306289e-04 RMS:+5.8051418356002832e-05 +specific_humidity | Min:-6.6741214369962698e-03 Max:+9.0731153226882751e-03 RMS:+1.4380776566867527e-04 +cloud_liquid_ice | Min:-4.9931336523754066e-04 Max:+2.6181751401796260e-04 RMS:+3.2747284981508197e-06 +cloud_liquid_water | Min:-1.0141458910771410e-03 Max:+1.1396207487973308e-03 RMS:+1.0447469223790289e-05 +ozone_mass_mixing_ratio | Min:-2.9909193396824413e-06 Max:+3.4967162777667096e-06 RMS:+5.0924831319987802e-08 +---------------------------------------------------------------------------------------------------- +FV3 Increment for member 0: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-1.7416909136434541e+01 Max:+1.8325867271120192e+01 RMS:+7.2689113073983769e-01 +northward_wind | Min:-1.5335235321425948e+01 Max:+2.1574447615122054e+01 RMS:+7.1328003377466020e-01 +air_temperature | Min:-8.6048230478038406e+00 Max:+8.1497937417599609e+00 RMS:+3.1081395800884187e-01 +specific_humidity | Min:-6.6741214369962698e-03 Max:+9.0731153226882751e-03 RMS:+1.4380776566867527e-04 +cloud_liquid_ice | Min:-4.9931336523754066e-04 Max:+2.6181751401796260e-04 RMS:+3.2747284981508197e-06 +cloud_liquid_water | Min:-1.0141458910771410e-03 Max:+1.1396207487973308e-03 RMS:+1.0447469223790289e-05 +ozone_mass_mixing_ratio | Min:-2.9909193396824413e-06 Max:+3.4967162777667096e-06 RMS:+5.0924831319987802e-08 +air_pressure_thickness | Min:-1.1013638868462294e-05 Max:+1.9681036064866930e-05 RMS:+6.5512588707706875e-07 +layer_thickness | Min:-2.8045559103640699e+01 Max:+2.1697786412500136e+01 RMS:+6.5544095172004369e-01 +---------------------------------------------------------------------------------------------------- +Background State for member 1: + +---------------------------------------------------------------------------------------------------- +State print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-5.2853490758012072e+01 Max:+8.7248708527964936e+01 RMS:+1.5955809745480765e+01 +northward_wind | Min:-7.2178651628585953e+01 Max:+7.2568167230757609e+01 RMS:+7.7335061167195889e+00 +air_temperature | Min:+1.7660670217895057e+02 Max:+3.1526174222386965e+02 RMS:+2.4989392943476341e+02 +surface_pressure | Min:+5.3317702550070273e+04 Max:+1.0394629485957995e+05 RMS:+9.8892949759388735e+04 +specific_humidity | Min:+2.1514597275760548e-08 Max:+1.9663168048133908e-02 RMS:+4.8569105861498299e-03 +cloud_liquid_ice | Min:-1.3544569699620215e-20 Max:+7.9557019872326799e-04 RMS:+1.0816147029169270e-05 +cloud_liquid_water | Min:-5.4200711162051571e-20 Max:+1.2298889446687945e-03 RMS:+3.8689917911663205e-05 +ozone_mass_mixing_ratio | Min:+1.6238717942558199e-08 Max:+1.8031521448783218e-05 RMS:+4.4947640660308833e-06 +surface_geopotential_height | Min:-2.7018394470214844e+01 Max:+5.2697460937500000e+03 RMS:+6.3032575784066080e+02 +---------------------------------------------------------------------------------------------------- +JEDI Increment for member 1: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 8 | cube sphere face size: C48 +eastward_wind | Min:-1.7542991285853031e+01 Max:+2.0968845531775742e+01 RMS:+7.2825863145362402e-01 +northward_wind | Min:-1.5283258164430123e+01 Max:+2.0478626874987171e+01 RMS:+7.1562489129210427e-01 +air_temperature | Min:-1.0374519800275246e+01 Max:+9.3297652767893524e+00 RMS:+3.1237829519350230e-01 +surface_pressure | Min:-4.8986046327570421e-04 Max:+9.0817638056250871e-04 RMS:+5.9230402548777353e-05 +specific_humidity | Min:-6.9184909302780918e-03 Max:+8.2127508558306646e-03 RMS:+1.4099077159566875e-04 +cloud_liquid_ice | Min:-5.2537411650465499e-04 Max:+3.1949478810012653e-04 RMS:+3.2097080991341253e-06 +cloud_liquid_water | Min:-1.0684141562485590e-03 Max:+1.1931964279486475e-03 RMS:+1.0416514064617798e-05 +ozone_mass_mixing_ratio | Min:-3.1852115564505394e-06 Max:+3.2851197161513411e-06 RMS:+5.1928484225101225e-08 +---------------------------------------------------------------------------------------------------- +FV3 Increment for member 1: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-1.7542991285853031e+01 Max:+2.0968845531775742e+01 RMS:+7.2825863145362402e-01 +northward_wind | Min:-1.5283258164430123e+01 Max:+2.0478626874987171e+01 RMS:+7.1562489129210427e-01 +air_temperature | Min:-1.0374519800275246e+01 Max:+9.3297652767893524e+00 RMS:+3.1237829519350230e-01 +specific_humidity | Min:-6.9184909302780918e-03 Max:+8.2127508558306646e-03 RMS:+1.4099077159566875e-04 +cloud_liquid_ice | Min:-5.2537411650465499e-04 Max:+3.1949478810012653e-04 RMS:+3.2097080991341253e-06 +cloud_liquid_water | Min:-1.0684141562485590e-03 Max:+1.1931964279486475e-03 RMS:+1.0416514064617798e-05 +ozone_mass_mixing_ratio | Min:-3.1852115564505394e-06 Max:+3.2851197161513411e-06 RMS:+5.1928484225101225e-08 +air_pressure_thickness | Min:-1.0965086403302848e-05 Max:+2.0328705431893468e-05 RMS:+6.6843104175422882e-07 +layer_thickness | Min:-3.2106148452359776e+01 Max:+2.5923789087046316e+01 RMS:+6.6540710201306896e-01 +---------------------------------------------------------------------------------------------------- +Background State for member 2: + +---------------------------------------------------------------------------------------------------- +State print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-5.3776366655868109e+01 Max:+8.6331467223030344e+01 RMS:+1.5960680883840784e+01 +northward_wind | Min:-7.0176400159320124e+01 Max:+6.9531049915936578e+01 RMS:+7.7410680097841684e+00 +air_temperature | Min:+1.7648447482434227e+02 Max:+3.1491330999751426e+02 RMS:+2.4989313307279673e+02 +surface_pressure | Min:+5.3350124363319999e+04 Max:+1.0389818047809265e+05 RMS:+9.8892179510558097e+04 +specific_humidity | Min:+2.1846447498856659e-08 Max:+2.0007929878326374e-02 RMS:+4.8392192734415156e-03 +cloud_liquid_ice | Min:-6.7740196346531239e-21 Max:+6.2473018245821010e-04 RMS:+1.0889666282638220e-05 +cloud_liquid_water | Min:-5.4107584399974539e-20 Max:+1.2132298501853738e-03 RMS:+3.8405804865664137e-05 +ozone_mass_mixing_ratio | Min:+1.2289325508931378e-08 Max:+1.8036413152177077e-05 RMS:+4.4950884931704925e-06 +surface_geopotential_height | Min:-2.7018394470214844e+01 Max:+5.2697460937500000e+03 RMS:+6.3032575784066080e+02 +---------------------------------------------------------------------------------------------------- +JEDI Increment for member 2: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 8 | cube sphere face size: C48 +eastward_wind | Min:-1.8014062913663103e+01 Max:+1.8516732485049666e+01 RMS:+7.3383694849572323e-01 +northward_wind | Min:-1.5579280119728031e+01 Max:+2.2762102719398591e+01 RMS:+7.2377717441299694e-01 +air_temperature | Min:-1.0570848751737598e+01 Max:+8.3564092475959129e+00 RMS:+3.1645038788954982e-01 +surface_pressure | Min:-4.7656900311210393e-04 Max:+9.1220166839889316e-04 RMS:+5.8396146445486219e-05 +specific_humidity | Min:-5.2439197475218757e-03 Max:+8.2607880293262357e-03 RMS:+1.4211303446855155e-04 +cloud_liquid_ice | Min:-5.2671607196952148e-04 Max:+2.7498589550193714e-04 RMS:+3.2193226262458792e-06 +cloud_liquid_water | Min:-1.0851123947058787e-03 Max:+1.2045791096627974e-03 RMS:+1.0548571598067807e-05 +ozone_mass_mixing_ratio | Min:-3.2510682480215228e-06 Max:+3.3849184382668304e-06 RMS:+5.2379967545874409e-08 +---------------------------------------------------------------------------------------------------- +FV3 Increment for member 2: + +---------------------------------------------------------------------------------------------------- +Increment print | number of fields = 9 | cube sphere face size: C48 +eastward_wind | Min:-1.8014062913663103e+01 Max:+1.8516732485049666e+01 RMS:+7.3383694849572323e-01 +northward_wind | Min:-1.5579280119728031e+01 Max:+2.2762102719398591e+01 RMS:+7.2377717441299694e-01 +air_temperature | Min:-1.0570848751737598e+01 Max:+8.3564092475959129e+00 RMS:+3.1645038788954982e-01 +specific_humidity | Min:-5.2439197475218757e-03 Max:+8.2607880293262357e-03 RMS:+1.4211303446855155e-04 +cloud_liquid_ice | Min:-5.2671607196952148e-04 Max:+2.7498589550193714e-04 RMS:+3.2193226262458792e-06 +cloud_liquid_water | Min:-1.0851123947058787e-03 Max:+1.2045791096627974e-03 RMS:+1.0548571598067807e-05 +ozone_mass_mixing_ratio | Min:-3.2510682480215228e-06 Max:+3.3849184382668304e-06 RMS:+5.2379967545874409e-08 +air_pressure_thickness | Min:-1.0667572496458888e-05 Max:+2.0418810890987515e-05 RMS:+6.5901623607235396e-07 +layer_thickness | Min:-2.8377559817174188e+01 Max:+2.5490176089209854e+01 RMS:+6.7263739596740091e-01 +---------------------------------------------------------------------------------------------------- diff --git a/test/atm/global-workflow/lgetkf.ref b/test/testreference/atm_jjob_lgetkf.ref similarity index 100% rename from test/atm/global-workflow/lgetkf.ref rename to test/testreference/atm_jjob_lgetkf.ref diff --git a/test/atm/global-workflow/lgetkf_observer.ref b/test/testreference/atm_jjob_lgetkf_observer.ref similarity index 100% rename from test/atm/global-workflow/lgetkf_observer.ref rename to test/testreference/atm_jjob_lgetkf_observer.ref diff --git a/test/atm/global-workflow/lgetkf_solver.ref b/test/testreference/atm_jjob_lgetkf_solver.ref similarity index 100% rename from test/atm/global-workflow/lgetkf_solver.ref rename to test/testreference/atm_jjob_lgetkf_solver.ref diff --git a/ush/CMakeLists.txt b/ush/CMakeLists.txt index 2bf242db4..65f8bbfe8 100644 --- a/ush/CMakeLists.txt +++ b/ush/CMakeLists.txt @@ -1,6 +1,5 @@ list(APPEND ush_files check_yaml_keys.py - jediinc2fv3.py genYAML ) diff --git a/ush/jediinc2fv3.py b/ush/jediinc2fv3.py deleted file mode 100755 index 3bee852df..000000000 --- a/ush/jediinc2fv3.py +++ /dev/null @@ -1,187 +0,0 @@ -#!/usr/bin/env python3 -# translate FV3-JEDI increment to FV3 readable format with delp and hydrostatic delz calculation -import argparse -import netCDF4 as nc -import numpy as np -import logging -import os - -vardict = { - 'ua': 'u_inc', - 'va': 'v_inc', - 't': 'T_inc', - 'T': 'T_inc', - 'sphum': 'sphum_inc', - 'liq_wat': 'liq_wat_inc', - 'o3mr': 'o3mr_inc', - 'ice_wat': 'icmr_inc', - 'lat': 'lat', - 'lon': 'lon', -} - - -def jedi_inc_to_fv3(FV3ges, FV3JEDIinc, FV3inc): - logging.basicConfig(format='%(asctime)s:%(levelname)s:%(message)s', level=logging.INFO, datefmt='%Y-%m-%d %H:%M:%S') - # Check if required input netcdf files exist. If not present, exit with error message. - try: - with nc.Dataset(FV3ges, 'r'), nc.Dataset(FV3JEDIinc, 'r'): - ncges = nc.Dataset(FV3ges, 'r') - ncin = nc.Dataset(FV3JEDIinc, 'r') - ncout = nc.Dataset(FV3inc, 'w', format='NETCDF4') - create_fv3inc(ncges, ncin, ncout) - - except FileNotFoundError as e: - logging.error(f"Error occurred with message {e}") - raise - - -def create_fv3inc(ncges, ncin, ncout): - - # Copy over dimensions - for name, dimension in ncin.dimensions.items(): - if name == 'time': - continue - elif name == 'edge': - nameout = 'ilev' - else: - nameout = name - ncout.createDimension(nameout, - (len(dimension) if not dimension.isunlimited() else None)) - # Some global attributes - ncout.source = 'jediinc2fv3.py' - ncout.comment = 'Increment produced by FV3-JEDI and modified for use by FV3 read' - - # Create all the dummy vertical coordinate variables - nlevs = len(ncin.dimensions['lev']) - nlats = len(ncin.dimensions['lat']) - nlons = len(ncin.dimensions['lon']) - pfull = range(1, nlevs+1) - phalf = range(1, nlevs+2) - levvar = ncout.createVariable('lev', 'f4', ('lev')) - levvar[:] = pfull - pfullvar = ncout.createVariable('pfull', 'f4', ('lev')) - pfullvar[:] = pfull - ilevvar = ncout.createVariable('ilev', 'f4', ('ilev')) - ilevvar[:] = phalf - hyaivar = ncout.createVariable('hyai', 'f4', ('ilev')) - hyaivar[:] = phalf - hybivar = ncout.createVariable('hybi', 'f4', ('ilev')) - hybivar[:] = phalf - - # Rename and change dimensionality of fields - for name, variable in ncin.variables.items(): - if len(variable.dimensions) in [4]: - dimsout = variable.dimensions[1:] - dimsout_inc = dimsout - else: - dimsout = variable.dimensions - - if name in vardict: - # The temperature increment is needed to compute the delz - # increment. Either T or t may be used in jedi increment - # files. Set tinc to the appropriate case. - if name in ['T', 't']: - tinc = name - - x = ncout.createVariable(vardict[name], 'f4', dimsout) - if len(variable.dimensions) in [4]: - ncout[vardict[name]][:] = ncin[name][0, ...] - else: - ncout[vardict[name]][:] = ncin[name][:] - - # Populate increment and guess fields - # Note: increment and guess fields have same shape - # ps_inc is (time, lat, lon), ps_ges is {time, grid_yt, grid_xt) - # t_inc is (time, lev, lat, lon), t_ges is (time, pfull, grid_yt, grid_xt) - - ps_ges = ncges.variables['pressfc'][:] - t_ges = ncges.variables['tmp'][:] - q_ges = ncges.variables['spfh'][:] - - ps_inc = ncin.variables['ps'][:] - t_inc = ncin.variables[tinc][:] - q_inc = ncin.variables['sphum'][:] - - # Compute analysis ps - ps_anl = np.zeros((nlats, nlons), float) - ps_anl = ps_ges + ps_inc - - # Set constants and compute derived constants - grav = 9.80665 - airmw = 28.965 - h2omw = 18.015 - runiv = 8314.47 - rdry = runiv/airmw - rvap = runiv/h2omw - cpdry = 3.5*rdry - fv = (rvap/rdry)-1 - rdog = rdry/grav - kappa = rdry/cpdry - kap1 = kappa+1.0 - kapr = 1.0/kappa - - # Get ak,bk from guess file - nc_attrs = ncges.ncattrs() - ak = ncges.getncattr('ak') - bk = ncges.getncattr('bk') - - # Compute guess and analysis interface pressures - prsi_ges = np.zeros((nlevs+1, nlats, nlons), float) - prsi_anl = np.zeros((nlevs+1, nlats, nlons), float) - for k in range(0, nlevs+1): - prsi_ges[k, :, :] = ak[k]+bk[k]*ps_ges[:, :] - prsi_anl[k, :, :] = ak[k]+bk[k]*ps_anl[:, :] - - # Compute pressure increment (delp_inc). Compute - # guess and analysis layer pressures using Philips method - delp_inc = np.zeros((nlevs, nlats, nlons), float) - prsl_ges = np.zeros((nlevs, nlats, nlons), float) - prsl_anl = np.zeros((nlevs, nlats, nlons), float) - for k in range(0, nlevs): - dbk = bk[k+1] - bk[k] - delp_inc[k, :, :] = ps_inc[:, :] * dbk - prsl_ges[k, :, :] = ((prsi_ges[k+1, :, :]**kap1 - prsi_ges[k, :, :]**kap1) / (kap1*(prsi_ges[k+1, :, :] - prsi_ges[k, :, :])))**kapr - prsl_anl[k, :, :] = ((prsi_anl[k+1, :, :]**kap1 - prsi_anl[k, :, :]**kap1) / (kap1*(prsi_anl[k+1, :, :] - prsi_anl[k, :, :])))**kapr - - # Write delp increment to output file - x = ncout.createVariable('delp_inc', 'f4', dimsout_inc) - ncout['delp_inc'][:] = delp_inc[:] - - # Compute analysis temperature andl specific humidity - t_anl = np.zeros((nlevs, nlats, nlons), float) - q_anl = np.zeros((nlevs, nlats, nlons), float) - t_anl = t_ges + t_inc - q_anl = q_ges + q_inc - - # Compute guess and analysis virtual temperature - tv_ges = np.zeros((nlevs, nlats, nlons), float) - tv_anl = np.zeros((nlevs, nlats, nlons), float) - tv_ges = t_ges * (1.0 + fv*q_ges) - tv_anl = t_anl * (1.0 + fv*q_anl) - - # Compute guess and analysis delz and delz increment - delz_ges = np.zeros((nlevs, nlats, nlons), float) - delz_anl = np.zeros((nlevs, nlats, nlons), float) - delz_inc = np.zeros((nlevs, nlats, nlons), float) - for k in range(0, nlevs): - if k == 0: - delz_ges[k, :, :] = rdog * tv_ges[:, k, :, :] * np.log(prsl_ges[k, :, :]/prsi_ges[k+1, :, :]) - delz_anl[k, :, :] = rdog * tv_anl[:, k, :, :] * np.log(prsl_anl[k, :, :]/prsi_anl[k+1, :, :]) - else: - delz_ges[k, :, :] = rdog * tv_ges[:, k, :, :] * np.log(prsi_ges[k, :, :]/prsi_ges[k+1, :, :]) - delz_anl[k, :, :] = rdog * tv_anl[:, k, :, :] * np.log(prsi_anl[k, :, :]/prsi_anl[k+1, :, :]) - - delz_inc[k, :, :] = delz_anl[k, :, :] - delz_ges[k, :, :] - - # Write delz increment to output file - x = ncout.createVariable('delz_inc', 'f4', dimsout_inc) - ncout['delz_inc'][:] = delz_inc[:] - - -if __name__ == "__main__": - parser = argparse.ArgumentParser() - parser.add_argument('FV3background', type=str, help='Input FV3 background file') - parser.add_argument('FV3JEDIincrement', type=str, help='Input FV3-JEDI LatLon Increment File') - parser.add_argument('FV3increment', type=str, help='Output FV3 Increment File') - args = parser.parse_args() - jedi_inc_to_fv3(args.FV3background, args.FV3JEDIincrement, args.FV3increment) diff --git a/utils/fv3jedi/fv3jedi_fv3inc.h b/utils/fv3jedi/fv3jedi_fv3inc.h index 8044692a0..183e426aa 100644 --- a/utils/fv3jedi/fv3jedi_fv3inc.h +++ b/utils/fv3jedi/fv3jedi_fv3inc.h @@ -110,12 +110,21 @@ namespace gdasapp { // Read background state fv3jedi::State xxBkg(stateGeom, stateInputConfig); - oops::Log::test() << "Background State: " << std::endl << xxBkg << std::endl; // Read JEDI increment fv3jedi::Increment dxJEDI(jediIncrGeom, jediIncrVars, xxBkg.validTime()); dxJEDI.read(jediIncrInputConfig); - oops::Log::test() << "JEDI Increment: " << std::endl << dxJEDI << std::endl; + + // Testing output for inputs + if ( nmem == 1 ) { + oops::Log::test() << "Background State:" << std::endl << xxBkg << std::endl; + oops::Log::test() << "JEDI Increment:" << std::endl << dxJEDI << std::endl; + } else { + oops::Log::test() << "Background State for member " << imem << ":" << std::endl \ + << xxBkg << std::endl; + oops::Log::test() << "JEDI Increment for member " << imem << ":" << std::endl \ + << dxJEDI << std::endl; + } // Increment conversion // --------------------------------------------------------------------------------- @@ -156,7 +165,14 @@ namespace gdasapp { } } dxFV3.fromFieldSet(dxFsFV3); - oops::Log::test() << "FV3 Increment: " << std::endl << dxFV3 << std::endl; + + // Test output for outputs + if ( nmem == 1 ) { + oops::Log::test() << "FV3 Increment:" << std::endl << dxFV3 << std::endl; + } else { + oops::Log::test() << "FV3 Increment for member " << imem << ":" << std::endl \ + << dxFV3 << std::endl; + } // Write FV3 increment dxFV3.write(fv3IncrOuputConfig); From 9b78c7d01c017a9f3600bb222396f7251386ed7b Mon Sep 17 00:00:00 2001 From: DavidNew-NOAA <134300700+DavidNew-NOAA@users.noreply.github.com> Date: Wed, 27 Nov 2024 08:16:30 -0500 Subject: [PATCH 5/5] Make sure gfs_* DA jobs are not regression tests (#1390) This PR addresses the bug @RussTreadon-NOAA found that ```gfs_atmanlvar``` was being run as a regression test and using the same test reference as ```gdas_atmanlvar``` in GW PR [#3120](https://github.com/NOAA-EMC/global-workflow/pull/3120). See https://github.com/NOAA-EMC/global-workflow/pull/3120#issuecomment-2501783018 I've moved all activation of testing mode in JCB out of the JCB base YAMLs and into the JCB algorithm YAMLs. I test the ```RUN``` variables to make sure it's not equal to ```gfs```. I re-ran all the regression tests, and they all passed. --- parm/atm/jcb-base.yaml.j2 | 5 ----- parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 | 3 +++ parm/atm/jcb-prototype_3dvar.yaml.j2 | 3 +++ parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 | 3 +++ parm/atm/jcb-prototype_lgetkf.yaml.j2 | 3 +++ parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 | 3 +++ parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 | 3 +++ parm/soca/marine-jcb-3dfgat.yaml.j2 | 3 +++ parm/soca/marine-jcb-base.yaml | 5 ----- test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 | 3 +++ test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 | 3 +++ test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 | 3 +++ test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 | 3 +++ .../global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 | 3 +++ test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 | 3 +++ 15 files changed, 39 insertions(+), 10 deletions(-) diff --git a/parm/atm/jcb-base.yaml.j2 b/parm/atm/jcb-base.yaml.j2 index 39c626a84..d7e1e5907 100644 --- a/parm/atm/jcb-base.yaml.j2 +++ b/parm/atm/jcb-base.yaml.j2 @@ -27,11 +27,6 @@ final_prints_frequency: PT3H number_of_outer_loops: 2 analysis_variables: [ua,va,t,ps,sphum,ice_wat,liq_wat,o3mr] -# Testing -# ------- - -do_testing: {{ DO_TEST_MODE | default(false, true) }} - # Model things # ------------ # Geometry diff --git a/parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 b/parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 index f7f6db57a..c0aaa3d38 100644 --- a/parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 +++ b/parm/atm/jcb-prototype_3dvar-fv3inc.yaml.j2 @@ -4,7 +4,10 @@ algorithm: fv3jedi_fv3inc_variational # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'gdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_3dvar-fv3inc.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_3dvar-fv3inc.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/parm/atm/jcb-prototype_3dvar.yaml.j2 b/parm/atm/jcb-prototype_3dvar.yaml.j2 index b89b65105..e1e2ff836 100644 --- a/parm/atm/jcb-prototype_3dvar.yaml.j2 +++ b/parm/atm/jcb-prototype_3dvar.yaml.j2 @@ -33,7 +33,10 @@ observations: # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'gdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_3dvar.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_3dvar.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 b/parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 index 9845103df..f7bf0049b 100644 --- a/parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 +++ b/parm/atm/jcb-prototype_lgetkf-fv3inc.yaml.j2 @@ -4,7 +4,10 @@ algorithm: fv3jedi_fv3inc_lgetkf # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf-fv3inc.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf-fv3inc.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/parm/atm/jcb-prototype_lgetkf.yaml.j2 b/parm/atm/jcb-prototype_lgetkf.yaml.j2 index 04f9faafd..03e364825 100644 --- a/parm/atm/jcb-prototype_lgetkf.yaml.j2 +++ b/parm/atm/jcb-prototype_lgetkf.yaml.j2 @@ -41,7 +41,10 @@ observations: # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 b/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 index 39e682415..62bc4b813 100644 --- a/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 +++ b/parm/atm/jcb-prototype_lgetkf_observer.yaml.j2 @@ -47,7 +47,10 @@ distribution_type: RoundRobin # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf_observer.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf_observer.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 b/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 index 7abccdd6e..ca62821aa 100644 --- a/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 +++ b/parm/atm/jcb-prototype_lgetkf_solver.yaml.j2 @@ -50,7 +50,10 @@ distribution_type: Halo # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/C96C48_ufs_hybatmDA_lgetkf_solver.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/C96C48_ufs_hybatmDA_lgetkf_solver.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/parm/soca/marine-jcb-3dfgat.yaml.j2 b/parm/soca/marine-jcb-3dfgat.yaml.j2 index 59d0b9ff5..f5301fb32 100644 --- a/parm/soca/marine-jcb-3dfgat.yaml.j2 +++ b/parm/soca/marine-jcb-3dfgat.yaml.j2 @@ -6,7 +6,10 @@ observations: !INC ${OBS_LIST_SHORT} # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'gdas' %} +do_testing: true test_reference_filename: '{{HOMEgfs}}/sorc/gdas.cd/test/testreference/C48mx500_3DVarAOWCDA_3dfgat.ref' test_output_filename: '{{HOMEgfs}}/sorc/gdas.cd/build/gdas/test/testoutput/C48mx500_3DVarAOWCDA_3dfgat.test.out' test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/parm/soca/marine-jcb-base.yaml b/parm/soca/marine-jcb-base.yaml index 1b55dc7d2..7ca450c7c 100644 --- a/parm/soca/marine-jcb-base.yaml +++ b/parm/soca/marine-jcb-base.yaml @@ -26,11 +26,6 @@ final_prints_frequency: PT3H number_of_outer_loops: 1 analysis_variables: [sea_ice_area_fraction, sea_ice_thickness, sea_ice_snow_thickness, sea_water_salinity, sea_water_potential_temperature, eastward_sea_water_velocity, northward_sea_water_velocity, sea_surface_height_above_geoid] -# Testing -# ------- - -do_testing: '{{ DO_TEST_MODE | default(false, true) }}' - # Model things # ------------ marine_window_begin: '{{MARINE_WINDOW_BEGIN}}' diff --git a/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 b/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 index 9686fbbce..f30be7ad9 100644 --- a/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_3dvar-fv3inc.yaml.j2 @@ -4,7 +4,10 @@ algorithm: fv3jedi_fv3inc_variational # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'gdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_3dvar-fv3inc.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_3dvar-fv3inc.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 b/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 index 7465a4274..104d8004d 100644 --- a/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_3dvar.yaml.j2 @@ -17,7 +17,10 @@ atmosphere_obsdatain_suffix: ".{{ current_cycle | to_YMDH }}.nc" # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'gdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_3dvar.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_3dvar.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 index cd11e771d..1238593e1 100644 --- a/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_lgetkf-fv3inc.yaml.j2 @@ -4,7 +4,10 @@ algorithm: fv3jedi_fv3inc_lgetkf # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf-fv3inc.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf-fv3inc.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 index e6b1f9593..0b01cdd8c 100644 --- a/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_lgetkf.yaml.j2 @@ -22,7 +22,10 @@ atmosphere_obsdatain_suffix: ".{{ current_cycle | to_YMDH }}.nc" # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 index ac0fcd7dd..f6d76e22d 100644 --- a/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_lgetkf_observer.yaml.j2 @@ -28,7 +28,10 @@ distribution_type: RoundRobin # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf_observer.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf_observer.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %} diff --git a/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 b/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 index 2c3bd2aae..78215fefe 100644 --- a/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 +++ b/test/atm/global-workflow/jcb-prototype_lgetkf_solver.yaml.j2 @@ -28,7 +28,10 @@ distribution_type: Halo # Testing things # -------------- +{% if DO_TEST_MODE and RUN == 'enkfgdas' %} +do_testing: true test_reference_filename: {{ HOMEgfs }}/sorc/gdas.cd/test/testreference/atm_jjob_lgetkf_solver.ref test_output_filename: {{ HOMEgfs }}/sorc/gdas.cd/build/gdas/test/testoutput/atm_jjob_lgetkf_solver.test.out test_float_relative_tolerance: 1.0e-3 test_float_absolute_tolerance: 1.0e-5 +{% endif %}