From f9a9facb2b93b6278406570a2ee8225a34c31adc Mon Sep 17 00:00:00 2001 From: Felix Hekhorn Date: Tue, 27 Sep 2022 18:36:37 +0200 Subject: [PATCH 1/2] Update eko --- benchmarks/runners/sandbox.py | 2 +- poetry.lock | 704 ++---------------- pyproject.toml | 2 +- .../splitting_functions/__init__.py | 4 +- src/yadism/esf/scale_variations.py | 46 +- src/yadism/output.py | 8 +- .../benchmark/external/xspace_bench_utils.py | 26 +- src/yadmark/benchmark/runner.py | 8 +- 8 files changed, 110 insertions(+), 690 deletions(-) diff --git a/benchmarks/runners/sandbox.py b/benchmarks/runners/sandbox.py index 7663b9602..3956f0d36 100644 --- a/benchmarks/runners/sandbox.py +++ b/benchmarks/runners/sandbox.py @@ -96,7 +96,7 @@ def doit(self): #{"PTO": 2, "FNS": "FFNS", "mc": 1.95, "mb": 1e6, "mt": 1e8, "NfFF": 4}, #{"PTO": 2, "FNS": "FONLL-C","NfFF":4,"IC":1,"mc":1.51,"Qmc":1.51,"mb":1e6,"mt":1e7,"ModEv":"TRN","MaxNfPdf":5,"MaxNfAs": 5, "Qmb":4.92,"Qmt":172.5,"alphas":0.118,"alphaqed":0.007496252,"Q0":1.65}, #{"PTO": 1, "FNS": "FONLL-A","IC":0}, - {"PTO": 2, "FNS": "FONLL-C","IC":0}, + {"PTO": 2, "FNS": "FONLL-C", "IC":0, "XIR": 2., "XIF": .7}, #{"PTO": 2, "FNS": "FONLL-B", "mc": 1.51, "NfFF": 4, "kbThr": 100, "ktThr": 100, "alphas": .3, "Qref": 3}, #{"PTO": 2, "FNS": "FONLL-B", "mc": 1.95, "mb": 1e6, "mt": 1e8, "NfFF": 4}, #{"PTO": 2, "FNS": "FONLL-C", "mc": 1.95, "mb": 1e6, "mt": 1e8, "NfFF": 4}, diff --git a/poetry.lock b/poetry.lock index 2b1bca241..079808b15 100644 --- a/poetry.lock +++ b/poetry.lock @@ -94,7 +94,7 @@ tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900 tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] [[package]] -name = "Babel" +name = "babel" version = "2.10.3" description = "Internationalization utilities" category = "main" @@ -290,8 +290,8 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" [[package]] name = "eko" -version = "0.9.4" -description = "Evolution Kernel Operator" +version = "0.10.2" +description = "Evolution Kernel Operators" category = "main" optional = false python-versions = ">=3.8,<3.11" @@ -299,14 +299,14 @@ python-versions = ">=3.8,<3.11" [package.dependencies] lz4 = ">=3.1.10,<4.0.0" numba = ">=0.55.0,<0.56.0" -numpy = ">=1.21.0,<2.0.0" +numpy = ">=1.22,<2.0" PyYAML = ">=6.0,<7.0" scipy = ">=1.7.3,<2.0.0" [package.extras] -box = ["banana-hep (>=0.6.5,<0.7.0)", "matplotlib (>=3.5.1,<4.0.0)", "pandas (>=1.3.0,<2.0.0)", "sqlalchemy (>=1.4.21,<2.0.0)"] +box = ["banana-hep (>=0.6.6,<0.7.0)", "matplotlib (>=3.5.1,<4.0.0)", "pandas (>=1.3.0,<2.0.0)", "sqlalchemy (>=1.4.21,<2.0.0)"] docs = ["Sphinx (>=4.3.2,<5.0.0)", "nbsphinx (>=0.8.8,<0.9.0)", "sphinx-rtd-theme (>=1.0.0,<2.0.0)", "sphinxcontrib-bibtex (>=2.4.1,<3.0.0)"] -mark = ["banana-hep (>=0.6.5,<0.7.0)", "matplotlib (>=3.5.1,<4.0.0)", "pandas (>=1.3.0,<2.0.0)", "sqlalchemy (>=1.4.21,<2.0.0)"] +mark = ["banana-hep (>=0.6.6,<0.7.0)", "matplotlib (>=3.5.1,<4.0.0)", "pandas (>=1.3.0,<2.0.0)", "sqlalchemy (>=1.4.21,<2.0.0)"] [[package]] name = "entrypoints" @@ -401,7 +401,7 @@ optional = true python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" [package.extras] -docs = ["Sphinx"] +docs = ["sphinx"] [[package]] name = "hypothesis" @@ -552,7 +552,7 @@ qa = ["flake8 (==3.8.3)", "mypy (==0.782)"] testing = ["Django (<3.1)", "colorama", "docopt", "pytest (<7.0.0)"] [[package]] -name = "Jinja2" +name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." category = "main" @@ -655,7 +655,7 @@ optional = false python-versions = ">=3.6" [[package]] -name = "LeProHQ" +name = "leprohq" version = "0.2.3" description = "(Un-)polarized Leptoproduction of Heavy Quarks" category = "main" @@ -686,7 +686,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, != 3.4.*" [package.extras] cssselect = ["cssselect (>=0.7)"] html5 = ["html5lib"] -htmlsoup = ["BeautifulSoup4"] +htmlsoup = ["beautifulsoup4"] source = ["Cython (>=0.29.7)"] [[package]] @@ -703,7 +703,7 @@ flake8 = ["flake8"] tests = ["psutil", "pytest (!=3.3.0)", "pytest-cov"] [[package]] -name = "MarkupSafe" +name = "markupsafe" version = "2.1.1" description = "Safely add untrusted strings to HTML/XML markup." category = "main" @@ -862,7 +862,6 @@ python-versions = ">=3.7,<3.11" [package.dependencies] llvmlite = ">=0.38.0rc1,<0.39" numpy = ">=1.18,<1.23" -setuptools = "*" [[package]] name = "numpy" @@ -981,7 +980,7 @@ optional = false python-versions = "*" [[package]] -name = "Pillow" +name = "pillow" version = "9.2.0" description = "Python Imaging Library (Fork)" category = "main" @@ -1004,7 +1003,7 @@ python-versions = "*" numpy = ">=1.16.0,<2.0.0" [[package]] -name = "pkgutil_resolve_name" +name = "pkgutil-resolve-name" version = "1.3.10" description = "Resolve a name to an object." category = "main" @@ -1122,7 +1121,7 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" [[package]] -name = "Pygments" +name = "pygments" version = "2.13.0" description = "Pygments is a syntax highlighting package written in Python." category = "main" @@ -1274,7 +1273,7 @@ optional = false python-versions = "*" [[package]] -name = "PyYAML" +name = "pyyaml" version = "6.0" description = "YAML parser and emitter for Python" category = "main" @@ -1351,19 +1350,6 @@ python-versions = ">=3.8,<3.12" [package.dependencies] numpy = ">=1.18.5,<1.25.0" -[[package]] -name = "setuptools" -version = "65.3.0" -description = "Easily download, build, install, upgrade, and uninstall Python packages" -category = "main" -optional = false -python-versions = ">=3.7" - 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{file = "zipp-3.8.1-py3-none-any.whl", hash = "sha256:47c40d7fe183a6f21403a199b3e4192cca5774656965b0a4988ad2f8feb5f009"}, - {file = "zipp-3.8.1.tar.gz", hash = "sha256:05b45f1ee8f807d0cc928485ca40a07cb491cf092ff587c0df9cb1fd154848d2"}, -] +zipp = [] diff --git a/pyproject.toml b/pyproject.toml index 2705bb3b2..7e1c9ea8e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -40,7 +40,7 @@ python = ">=3.8,<3.11" numpy = "^1.21.0" scipy = "^1.7.0" numba = "^0.55.0" -eko = "^0.9.4" +eko = "^0.10.2" pandas = "^1.3.0" rich = "^12.4.4" LeProHQ = "^0.2.3" diff --git a/src/yadism/coefficient_functions/splitting_functions/__init__.py b/src/yadism/coefficient_functions/splitting_functions/__init__.py index 8d28b2c24..74c12d3ec 100644 --- a/src/yadism/coefficient_functions/splitting_functions/__init__.py +++ b/src/yadism/coefficient_functions/splitting_functions/__init__.py @@ -38,7 +38,7 @@ def c110(lab, matrices, nf): def c211(lab, matrices, nf): # add -beta0 * identity # where identity is both in interpolation and channel space - beta0 = beta.beta_0(nf) * np.eye(matrices[lab, nf].shape[0]) + beta0 = beta.beta_qcd_as2(nf) * np.eye(matrices[lab, nf].shape[0]) if lab in ["P_gq_0", "P_qg_0"]: beta0 = np.zeros_like(matrices[lab, nf]) return matrices[lab, nf] - beta0 @@ -51,7 +51,7 @@ def c220ns(matrices, nf): def c220(labs, matrices, nf): return 0.5 * ( sum(matrices[lab, nf] for lab in labs[0]) - - beta.beta_0(nf) * matrices[labs[1], nf] + - beta.beta_qcd_as2(nf) * matrices[labs[1], nf] ) diff --git a/src/yadism/esf/scale_variations.py b/src/yadism/esf/scale_variations.py index f397d72eb..9e5027dfa 100644 --- a/src/yadism/esf/scale_variations.py +++ b/src/yadism/esf/scale_variations.py @@ -1,4 +1,5 @@ # -*- coding: utf-8 -*- +"""Implementation of factorization and renormalization scale variations.""" import logging import time @@ -36,18 +37,22 @@ def build_orders(order): class ScaleVariations: - """ - Apply scale variations. + """Manager for scale variations.""" - Parameters - ---------- + def __init__(self, order, interpolator, activate_ren, activate_fact): + """Inizialize manager. + + Parameters + ---------- order : int perturbative order interpolator : eko.interpolation.InterpolationDispatcher interpolation basis functions - """ - - def __init__(self, order, interpolator, activate_ren, activate_fact): + activate_ren : bool + activate renormalization scale variation + activate_fact : bool + activate factorization scale variation + """ self.order = order self.interpolator = interpolator self.activate_ren = activate_ren @@ -82,19 +87,17 @@ def compute_raw(self, nf): ) def fact_matrices(self, nf): - r""" - Compute all matrices related to factorization scale variation, - i.e. :math:`\ln(Q^2/\mu_F^2)`. + r"""Compute all matrices related to factorization scale variation, i.e. :math:`\ln(Q^2/\mu_F^2)`. Parameters ---------- - nf : int - number of active flavors + nf : int + number of active flavors Returns ------- - dict : - map with `(target, lnf, src) -> np.ndarray` + dict : + map with `(target, lnf, src) -> np.ndarray` """ self.compute_raw(nf) # load mappings @@ -111,22 +114,19 @@ def fact_matrices(self, nf): return fact_matrices def ren_coeffs(self, nf): - r""" - Provide the renormalization scale variation coefficients, - i.e. :math:`\ln(\mu_F^2/\mu_R^2)`. + r"""Provide the renormalization scale variation coefficients, i.e. :math:`\ln(\mu_F^2/\mu_R^2)`. Parameters ---------- - nf : int - number of active flavors + nf : int + number of active flavors Returns ------- - dict : - map with `(target, lnf2r, src) -> np.ndarray` - + dict : + map with `(target, lnf2r, src) -> np.ndarray` """ - ren_coeffs = {(2, 1, 1): -beta.beta_0(nf)} + ren_coeffs = {(2, 1, 1): -beta.beta_qcd_as2(nf)} return dict(filter(lambda item: item[0][0] <= self.order, ren_coeffs.items())) def apply_common_scale_variations(self, ker_orders, nf): diff --git a/src/yadism/output.py b/src/yadism/output.py index ea23bc579..8bf6981de 100644 --- a/src/yadism/output.py +++ b/src/yadism/output.py @@ -21,11 +21,11 @@ import numpy as np import pandas as pd import yaml -from eko import strong_coupling +from eko import compatibility as eko_compatibility +from eko import couplings from . import observable_name as on from .esf.result import ESFResult, EXSResult -from .input import compatibility from .version import __version__ @@ -98,8 +98,8 @@ def apply_pdf_theory(self, lhapdf_like, theory): output dictionary with all structure functions for all x, Q2, result and error """ - new_theory, _ = compatibility.update(theory, dict(TargetDIS="proton")) - sc = strong_coupling.StrongCoupling.from_dict(new_theory) + new_eko_theory = eko_compatibility.update_theory(theory) + sc = couplings.Couplings.from_dict(new_eko_theory) alpha_s = lambda muR: sc.a_s(muR**2) * 4.0 * np.pi alpha_qed = lambda _muR: theory["alphaqed"] return self.apply_pdf_alphas_alphaqed_xir_xif( diff --git a/src/yadmark/benchmark/external/xspace_bench_utils.py b/src/yadmark/benchmark/external/xspace_bench_utils.py index 23367ccc7..3358a2827 100644 --- a/src/yadmark/benchmark/external/xspace_bench_utils.py +++ b/src/yadmark/benchmark/external/xspace_bench_utils.py @@ -1,29 +1,29 @@ # -*- coding: utf-8 -*- -import eko.strong_coupling as eko_sc +"""Benchmark to xspace_bench (the original FONLL implementation).""" import numpy as np +from eko import compatibility as eko_compatibility +from eko import couplings as eko_sc from yadism import observable_name as on -from yadism.input import compatibility def compute_xspace_bench_data(theory, observables, pdf): - """ Run xspace_bench to compute observables. Parameters ---------- - theory : dict - theory runcard - observables : dict - observables runcard - pdf : lhapdf_like - PDF set + theory : dict + theory runcard + observables : dict + observables runcard + pdf : lhapdf_like + PDF set Returns ------- - num_tab : dict - xspace_bench numbers + dict + xspace_bench numbers """ import xspace_bench # pylint:disable=import-outside-toplevel @@ -65,7 +65,6 @@ def compute_xspace_bench_data(theory, observables, pdf): # select scheme scheme = theory["FNS"] - new_theory = compatibility.update(theory) if scheme == "ZM-VFNS": scheme = "ZMVN" @@ -84,7 +83,8 @@ def compute_xspace_bench_data(theory, observables, pdf): else: raise NotImplementedError(f"{scheme} is not implemented in xspace_bench.") - sc = eko_sc.StrongCoupling.from_dict(new_theory) + new_eko_theory = eko_compatibility.update_theory(theory) + sc = eko_sc.Couplings.from_dict(new_eko_theory) num_tab = {} # loop over functions diff --git a/src/yadmark/benchmark/runner.py b/src/yadmark/benchmark/runner.py index ee41aa7e5..f4f017c4d 100644 --- a/src/yadmark/benchmark/runner.py +++ b/src/yadmark/benchmark/runner.py @@ -1,10 +1,10 @@ # -*- coding: utf-8 -*- -import banana.cfg import numpy as np import pandas as pd from banana.benchmark.runner import BenchmarkRunner from banana.data import dfdict -from eko.strong_coupling import StrongCoupling +from eko import compatibility as eko_compatibility +from eko.couplings import Couplings import yadism from yadmark.data import db, observables @@ -45,8 +45,8 @@ def run_me(self, theory, ocard, pdf): alpha_s = lambda muR: lhapdf.mkAlphaS(pdf.set().name).alphasQ(muR) else: - new_theory, _ = yadism.input.compatibility.update(theory, ocard) - sc = StrongCoupling.from_dict(new_theory) + new_eko_theory = eko_compatibility.update_theory(theory) + sc = Couplings.from_dict(new_eko_theory) alpha_s = lambda muR: sc.a_s(muR**2) * 4.0 * np.pi alpha_qed = lambda _muR: theory["alphaqed"] From b0899099eb5e6d8d2c1bd9ad54641ec63cbd2ab2 Mon Sep 17 00:00:00 2001 From: Felix Hekhorn Date: Wed, 28 Sep 2022 11:54:51 +0200 Subject: [PATCH 2/2] Run poetry lock --- poetry.lock | 437 ++++++++++++++++++++++++++++++++++++++-------------- 1 file changed, 319 insertions(+), 118 deletions(-) diff --git a/poetry.lock b/poetry.lock index 981d1bd8b..a467ee213 100644 --- a/poetry.lock +++ b/poetry.lock @@ -32,7 +32,7 @@ python-versions = "*" [[package]] name = "astroid" -version = "2.12.9" +version = "2.12.10" description = "An abstract syntax tree for Python with inference support." category = "dev" optional = false @@ -88,10 +88,10 @@ optional = false python-versions = ">=3.5" [package.extras] -dev = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "furo", "sphinx", "sphinx-notfound-page", "pre-commit", "cloudpickle"] -docs = ["furo", "sphinx", "zope.interface", "sphinx-notfound-page"] -tests = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "zope.interface", "cloudpickle"] -tests_no_zope = ["coverage[toml] (>=5.0.2)", "hypothesis", "pympler", "pytest (>=4.3.0)", "mypy (>=0.900,!=0.940)", "pytest-mypy-plugins", "cloudpickle"] +dev = ["cloudpickle", "coverage[toml] (>=5.0.2)", "furo", "hypothesis", "mypy (>=0.900,!=0.940)", "pre-commit", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "sphinx", "sphinx-notfound-page", "zope.interface"] +docs = ["furo", "sphinx", "sphinx-notfound-page", "zope.interface"] +tests = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins", "zope.interface"] +tests_no_zope = ["cloudpickle", "coverage[toml] (>=5.0.2)", "hypothesis", "mypy (>=0.900,!=0.940)", "pympler", "pytest (>=4.3.0)", "pytest-mypy-plugins"] [[package]] name = "babel" @@ -164,11 +164,11 @@ webencodings = "*" [package.extras] css = ["tinycss2 (>=1.1.0,<1.2)"] -dev = ["build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "Sphinx (==4.3.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)", "black (==22.3.0)", "mypy (==0.961)"] +dev = ["Sphinx (==4.3.2)", "black (==22.3.0)", "build (==0.8.0)", "flake8 (==4.0.1)", "hashin (==0.17.0)", "mypy (==0.961)", "pip-tools (==6.6.2)", "pytest (==7.1.2)", "tox (==3.25.0)", "twine (==4.0.1)", "wheel (==0.37.1)"] [[package]] name = "certifi" -version = "2022.9.14" +version = "2022.9.24" description = "Python package for providing Mozilla's CA Bundle." category = "main" optional = false @@ -224,7 +224,7 @@ optional = false python-versions = "*" [package.extras] -test = ["hypothesis (==3.55.3)", "flake8 (==3.7.8)"] +test = ["flake8 (==3.7.8)", "hypothesis (==3.55.3)"] [[package]] name = "contourpy" @@ -238,11 +238,11 @@ python-versions = ">=3.7" numpy = ">=1.16" [package.extras] -test-no-codebase = ["pillow", "matplotlib", "pytest"] +bokeh = ["bokeh", "selenium"] +docs = ["docutils (<0.18)", "sphinx", "sphinx-rtd-theme"] +test = ["flake8", "isort", "matplotlib", "pillow", "pytest"] test-minimal = ["pytest"] -test = ["isort", "flake8", "pillow", "matplotlib", "pytest"] -docs = ["sphinx-rtd-theme", "sphinx", "docutils (<0.18)"] -bokeh = ["selenium", "bokeh"] +test-no-codebase = ["matplotlib", "pillow", "pytest"] [[package]] name = "coverage" @@ -347,12 +347,15 @@ test = ["pytest (>=6)"] [[package]] name = "executing" -version = "1.0.0" +version = "1.1.0" description = "Get the currently executing AST node of a frame, and other information" category = "main" optional = false python-versions = "*" +[package.extras] +tests = ["asttokens", "littleutils", "pytest", "rich"] + [[package]] name = "fancycompleter" version = "0.9.1" @@ -367,14 +370,14 @@ pyrepl = ">=0.8.2" [[package]] name = "fastjsonschema" -version = "2.16.1" +version = "2.16.2" description = "Fastest Python implementation of JSON schema" category = "main" optional = false python-versions = "*" [package.extras] -devel = ["colorama", "jsonschema", "json-spec", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] +devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benchmark", "pytest-cache", "validictory"] [[package]] name = "filelock" @@ -390,16 +393,16 @@ testing = ["covdefaults (>=2.2)", "coverage (>=6.4.2)", "pytest (>=7.1.2)", "pyt [[package]] name = "fonttools" -version = "4.37.2" +version = "4.37.3" description = "Tools to manipulate font files" category = "main" optional = true python-versions = ">=3.7" [package.extras] -all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "uharfbuzz (>=0.23.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"] +all = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "lz4 (>=1.7.4.2)", "matplotlib", "munkres", "scipy", "skia-pathops (>=0.5.0)", "sympy", "uharfbuzz (>=0.23.0)", "unicodedata2 (>=14.0.0)", "xattr", "zopfli (>=0.1.4)"] graphite = ["lz4 (>=1.7.4.2)"] -interpolatable = ["scipy", "munkres"] +interpolatable = ["munkres", "scipy"] lxml = ["lxml (>=4.0,<5)"] pathops = ["skia-pathops (>=0.5.0)"] plot = ["matplotlib"] @@ -408,7 +411,7 @@ symfont = ["sympy"] type1 = ["xattr"] ufo = ["fs (>=2.2.0,<3)"] unicode = ["unicodedata2 (>=14.0.0)"] -woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"] +woff = ["brotli (>=1.0.1)", "brotlicffi (>=0.8.0)", "zopfli (>=0.1.4)"] [[package]] name = "greenlet" @@ -423,7 +426,7 @@ docs = ["sphinx"] [[package]] name = "hypothesis" -version = "6.54.5" +version = "6.54.6" description = "A library for property-based testing" category = "dev" optional = false @@ -435,8 +438,8 @@ exceptiongroup = {version = ">=1.0.0rc8", markers = "python_version < \"3.11\""} sortedcontainers = ">=2.1.0,<3.0.0" [package.extras] -all = ["black (>=19.10b0)", "click (>=7.0)", "django (>=3.2)", "dpcontracts (>=0.4)", "lark-parser (>=0.6.5)", "libcst (>=0.3.16)", "numpy (>=1.9.0)", "pandas (>=1.0)", "pytest (>=4.6)", "python-dateutil (>=1.4)", "pytz (>=2014.1)", "redis (>=3.0.0)", "rich (>=9.0.0)", "importlib-metadata (>=3.6)", "backports.zoneinfo (>=0.2.1)", "tzdata (>=2022.2)"] -cli = ["click (>=7.0)", "black (>=19.10b0)", "rich (>=9.0.0)"] +all = ["backports.zoneinfo (>=0.2.1)", "black (>=19.10b0)", "click (>=7.0)", "django (>=3.2)", "dpcontracts (>=0.4)", "importlib-metadata (>=3.6)", "lark-parser (>=0.6.5)", "libcst (>=0.3.16)", "numpy (>=1.9.0)", "pandas (>=1.0)", "pytest (>=4.6)", "python-dateutil (>=1.4)", "pytz (>=2014.1)", "redis (>=3.0.0)", "rich (>=9.0.0)", "tzdata (>=2022.2)"] +cli = ["black (>=19.10b0)", "click (>=7.0)", "rich (>=9.0.0)"] codemods = ["libcst (>=0.3.16)"] dateutil = ["python-dateutil (>=1.4)"] django = ["django (>=3.2)"] @@ -478,9 +481,9 @@ python-versions = ">=3.7" zipp = ">=0.5" [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)"] +docs = ["jaraco.packaging (>=9)", "rst.linker (>=1.9)", "sphinx"] perf = ["ipython"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "packaging", "pyfakefs", "flufl.flake8", "pytest-perf (>=0.9.2)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)", "importlib-resources (>=1.3)"] +testing = ["flufl.flake8", "importlib-resources (>=1.3)", "packaging", "pyfakefs", "pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)", "pytest-perf (>=0.9.2)"] [[package]] name = "importlib-resources" @@ -494,8 +497,8 @@ python-versions = ">=3.7" zipp = {version = ">=3.1.0", markers = "python_version < \"3.10\""} [package.extras] -docs = ["sphinx", "jaraco.packaging (>=9)", "rst.linker (>=1.9)", "jaraco.tidelift (>=1.4)"] -testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-black (>=0.3.7)", "pytest-mypy (>=0.9.1)"] +docs = ["jaraco.packaging (>=9)", "jaraco.tidelift (>=1.4)", "rst.linker (>=1.9)", "sphinx"] +testing = ["pytest (>=6)", "pytest-black (>=0.3.7)", "pytest-checkdocs (>=2.4)", "pytest-cov", "pytest-enabler (>=1.3)", "pytest-flake8", "pytest-mypy (>=0.9.1)"] [[package]] name = "iniconfig" @@ -528,7 +531,7 @@ stack-data = "*" traitlets = ">=5" [package.extras] -all = ["black", "Sphinx (>=1.3)", "ipykernel", "nbconvert", "nbformat", "ipywidgets", "notebook", "ipyparallel", "qtconsole", "pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "numpy (>=1.19)", "pandas", "trio"] +all = ["Sphinx (>=1.3)", "black", "curio", "ipykernel", "ipyparallel", "ipywidgets", "matplotlib (!=3.2.0)", "nbconvert", "nbformat", "notebook", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "qtconsole", "testpath", "trio"] black = ["black"] doc = ["Sphinx (>=1.3)"] kernel = ["ipykernel"] @@ -538,7 +541,7 @@ notebook = ["ipywidgets", "notebook"] parallel = ["ipyparallel"] qtconsole = ["qtconsole"] test = ["pytest (<7.1)", "pytest-asyncio", "testpath"] -test_extra = ["pytest (<7.1)", "pytest-asyncio", "testpath", "curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "trio"] +test_extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.19)", "pandas", "pytest (<7.1)", "pytest-asyncio", "testpath", "trio"] [[package]] name = "isort" @@ -549,10 +552,10 @@ optional = false python-versions = ">=3.6.1,<4.0" [package.extras] -pipfile_deprecated_finder = ["pipreqs", "requirementslib"] -requirements_deprecated_finder = ["pipreqs", "pip-api"] colors = ["colorama (>=0.4.3,<0.5.0)"] +pipfile_deprecated_finder = ["pipreqs", "requirementslib"] plugins = ["setuptools"] +requirements_deprecated_finder = ["pip-api", "pipreqs"] [[package]] name = "jedi" @@ -619,7 +622,7 @@ tornado = ">=6.2" traitlets = "*" [package.extras] -doc = ["ipykernel", "myst-parser", "sphinx-rtd-theme", "sphinx (>=1.3.6)", "sphinxcontrib-github-alt"] +doc = ["ipykernel", "myst-parser", "sphinx (>=1.3.6)", "sphinx-rtd-theme", "sphinxcontrib-github-alt"] test = ["codecov", "coverage", "ipykernel (>=6.5)", "ipython", "mypy", "pre-commit", "pytest", "pytest-asyncio (>=0.18)", "pytest-cov", "pytest-timeout"] [[package]] @@ -718,7 +721,7 @@ python-versions = ">=3.5" [package.extras] docs = ["sphinx (>=1.6.0)", "sphinx-bootstrap-theme"] flake8 = ["flake8"] -tests = ["pytest (!=3.3.0)", "psutil", "pytest-cov"] +tests = ["psutil", "pytest (!=3.3.0)", "pytest-cov"] [[package]] name = "markupsafe" @@ -790,7 +793,7 @@ nest-asyncio = "*" traitlets = ">=5.2.2" [package.extras] -sphinx = ["autodoc-traits", "mock", "moto", "myst-parser", "Sphinx (>=1.7)", "sphinx-book-theme"] +sphinx = ["Sphinx (>=1.7)", "autodoc-traits", "mock", "moto", "myst-parser", "sphinx-book-theme"] test = ["black", "check-manifest", "flake8", "ipykernel", "ipython", "ipywidgets", "mypy", "nbconvert", "pip (>=18.1)", "pre-commit", "pytest (>=4.1)", "pytest-asyncio", "pytest-cov (>=2.6.1)", "setuptools (>=60.0)", "testpath", "twine (>=1.11.0)", "xmltodict"] [[package]] @@ -821,8 +824,8 @@ tinycss2 = "*" traitlets = ">=5.0" [package.extras] -all = ["ipykernel", "ipython", "ipywidgets (>=7)", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx-rtd-theme", "sphinx (==5.0.2)", "tornado (>=6.1)"] -docs = ["ipython", "nbsphinx (>=0.2.12)", "sphinx-rtd-theme", "sphinx (==5.0.2)"] +all = ["ipykernel", "ipython", "ipywidgets (>=7)", "nbsphinx (>=0.2.12)", "pre-commit", "pyppeteer (>=1,<1.1)", "pyqtwebengine (>=5.15)", "pytest", "pytest-cov", "pytest-dependency", "sphinx (==5.0.2)", "sphinx-rtd-theme", "tornado (>=6.1)"] +docs = ["ipython", "nbsphinx (>=0.2.12)", "sphinx (==5.0.2)", "sphinx-rtd-theme"] qtpdf = ["pyqtwebengine (>=5.15)"] qtpng = ["pyqtwebengine (>=5.15)"] serve = ["tornado (>=6.1)"] @@ -831,7 +834,7 @@ webpdf = ["pyppeteer (>=1,<1.1)"] [[package]] name = "nbformat" -version = "5.5.0" +version = "5.6.1" description = "The Jupyter Notebook format" category = "main" optional = false @@ -840,11 +843,11 @@ python-versions = ">=3.7" [package.dependencies] fastjsonschema = "*" jsonschema = ">=2.6" -jupyter_core = "*" +jupyter-core = "*" traitlets = ">=5.1" [package.extras] -test = ["check-manifest", "testpath", "pytest", "pre-commit", "pep440"] +test = ["check-manifest", "pep440", "pre-commit", "pytest", "testpath"] [[package]] name = "nbsphinx" @@ -903,7 +906,7 @@ pyparsing = ">=2.0.2,<3.0.5 || >3.0.5" [[package]] name = "pandas" -version = "1.4.4" +version = "1.5.0" description = "Powerful data structures for data analysis, time series, and statistics" category = "main" optional = false @@ -911,10 +914,8 @@ python-versions = ">=3.8" [package.dependencies] numpy = [ - {version = ">=1.18.5", markers = "platform_machine != \"aarch64\" and platform_machine != \"arm64\" and python_version < \"3.10\""}, - {version = ">=1.19.2", markers = "platform_machine == \"aarch64\" and python_version < \"3.10\""}, - {version = ">=1.20.0", markers = "platform_machine == \"arm64\" and python_version < \"3.10\""}, {version = ">=1.21.0", markers = "python_version >= \"3.10\""}, + {version = ">=1.20.3", markers = "python_version < \"3.10\""}, ] python-dateutil = ">=2.8.1" pytz = ">=2020.1" @@ -1038,8 +1039,8 @@ optional = false python-versions = ">=3.7" [package.extras] -docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx-autodoc-typehints (>=1.12)", "sphinx (>=4)"] -test = ["appdirs (==1.4.4)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)", "pytest (>=6)"] +docs = ["furo (>=2021.7.5b38)", "proselint (>=0.10.2)", "sphinx (>=4)", "sphinx-autodoc-typehints (>=1.12)"] +test = ["appdirs (==1.4.4)", "pytest (>=6)", "pytest-cov (>=2.7)", "pytest-mock (>=3.6)"] [[package]] name = "pluggy" @@ -1050,8 +1051,8 @@ optional = false python-versions = ">=3.6" [package.extras] -testing = ["pytest-benchmark", "pytest"] -dev = ["tox", "pre-commit"] +dev = ["pre-commit", "tox"] +testing = ["pytest", "pytest-benchmark"] [[package]] name = "poethepoet" @@ -1152,14 +1153,14 @@ plugins = ["importlib-metadata"] [[package]] name = "pylint" -version = "2.15.2" +version = "2.15.3" description = "python code static checker" category = "dev" optional = false python-versions = ">=3.7.2" [package.dependencies] -astroid = ">=2.12.9,<=2.14.0-dev0" +astroid = ">=2.12.10,<=2.14.0-dev0" colorama = {version = ">=0.4.5", markers = "sys_platform == \"win32\""} dill = ">=0.2" isort = ">=4.2.5,<6" @@ -1182,7 +1183,7 @@ optional = false python-versions = ">=3.6.8" [package.extras] -diagrams = ["railroad-diagrams", "jinja2"] +diagrams = ["jinja2", "railroad-diagrams"] [[package]] name = "pyreadline" @@ -1243,7 +1244,7 @@ pytest = ">=4.6" toml = "*" [package.extras] -testing = ["fields", "hunter", "process-tests", "six", "pytest-xdist", "virtualenv"] +testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtualenv"] [[package]] name = "pytest-env" @@ -1301,7 +1302,7 @@ python-versions = ">=3.6" [[package]] name = "pyzmq" -version = "24.0.0" +version = "24.0.1" description = "Python bindings for 0MQ" category = "main" optional = false @@ -1447,8 +1448,8 @@ sphinxcontrib-serializinghtml = ">=1.1.5" [package.extras] docs = ["sphinxcontrib-websupport"] -lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"] -test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"] +lint = ["docutils-stubs", "flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "types-requests", "types-typed-ast"] +test = ["cython", "html5lib", "pytest", "pytest-cov", "typed-ast"] [[package]] name = "sphinx-rtd-theme" @@ -1474,8 +1475,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-bibtex" @@ -1504,7 +1505,7 @@ python-versions = "*" Sphinx = ">=2.0" [package.extras] -test = ["mypy", "pytest", "flake8-import-order", "flake8", "tox"] +test = ["flake8", "flake8-import-order", "mypy", "pytest", "tox"] [[package]] name = "sphinxcontrib-devhelp" @@ -1515,8 +1516,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-htmlhelp" @@ -1527,8 +1528,8 @@ optional = false python-versions = ">=3.6" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["html5lib", "pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-jsmath" @@ -1539,7 +1540,7 @@ optional = false python-versions = ">=3.5" [package.extras] -test = ["mypy", "flake8", "pytest"] +test = ["flake8", "mypy", "pytest"] [[package]] name = "sphinxcontrib-qthelp" @@ -1550,8 +1551,8 @@ optional = false python-versions = ">=3.5" [package.extras] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] -lint = ["docutils-stubs", "mypy", "flake8"] [[package]] name = "sphinxcontrib-serializinghtml" @@ -1562,7 +1563,7 @@ optional = false python-versions = ">=3.5" [package.extras] -lint = ["flake8", "mypy", "docutils-stubs"] +lint = ["docutils-stubs", "flake8", "mypy"] test = ["pytest"] [[package]] @@ -1577,20 +1578,20 @@ python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,>=2.7" greenlet = {version = "!=0.4.17", markers = "python_version >= \"3\" and (platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\")"} [package.extras] -aiomysql = ["greenlet (!=0.4.17)", "aiomysql"] -aiosqlite = ["typing_extensions (!=3.10.0.1)", "greenlet (!=0.4.17)", "aiosqlite"] +aiomysql = ["aiomysql", "greenlet (!=0.4.17)"] +aiosqlite = ["aiosqlite", "greenlet (!=0.4.17)", "typing_extensions (!=3.10.0.1)"] asyncio = ["greenlet (!=0.4.17)"] -asyncmy = ["greenlet (!=0.4.17)", "asyncmy (>=0.2.3,!=0.2.4)"] +asyncmy = ["asyncmy (>=0.2.3,!=0.2.4)", "greenlet (!=0.4.17)"] mariadb_connector = ["mariadb (>=1.0.1,!=1.1.2)"] mssql = ["pyodbc"] mssql_pymssql = ["pymssql"] mssql_pyodbc = ["pyodbc"] -mypy = ["sqlalchemy2-stubs", "mypy (>=0.910)"] -mysql = ["mysqlclient (>=1.4.0,<2)", "mysqlclient (>=1.4.0)"] +mypy = ["mypy (>=0.910)", "sqlalchemy2-stubs"] +mysql = ["mysqlclient (>=1.4.0)", "mysqlclient (>=1.4.0,<2)"] mysql_connector = ["mysql-connector-python"] -oracle = ["cx_oracle (>=7,<8)", "cx_oracle (>=7)"] +oracle = ["cx_oracle (>=7)", "cx_oracle (>=7,<8)"] postgresql = ["psycopg2 (>=2.7)"] -postgresql_asyncpg = ["greenlet (!=0.4.17)", "asyncpg"] +postgresql_asyncpg = ["asyncpg", "greenlet (!=0.4.17)"] postgresql_pg8000 = ["pg8000 (>=1.16.6,!=1.29.0)"] postgresql_psycopg2binary = ["psycopg2-binary"] postgresql_psycopg2cffi = ["psycopg2cffi"] @@ -1599,7 +1600,7 @@ sqlcipher = ["sqlcipher3-binary"] [[package]] name = "stack-data" -version = "0.5.0" +version = "0.5.1" description = "Extract data from python stack frames and tracebacks for informative displays" category = "main" optional = false @@ -1611,7 +1612,7 @@ executing = "*" pure-eval = "*" [package.extras] -tests = ["cython", "littleutils", "pygments", "typeguard", "pytest"] +tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"] [[package]] name = "tinycss2" @@ -1646,7 +1647,7 @@ python-versions = ">=3.7" [[package]] name = "tomlkit" -version = "0.11.4" +version = "0.11.5" description = "Style preserving TOML library" category = "dev" optional = false @@ -1688,8 +1689,8 @@ optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*, !=3.5.*, <4" [package.extras] -brotli = 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