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We have also uploaded some of the files to Box. It may be easier to download them that way but most importantly it is to make sure we can continue with exercises even if we experience problems with Uppmax. Files available on Box are listed below.

Files to explore data with IGV

for part III: Visualisation of mapped reads, coverage profies and peaks of the ChIP-seq data processing tutorial

Files for Differential Binding tutorial

BAMs

BEDs (narrow peaks called with MACS2 as in ChIP-seq data processing tutorial)

Example sample sheet for DiffBind