From e2d38269bd8a577dc491003d58e28c431adae2d6 Mon Sep 17 00:00:00 2001 From: Jacques Dainat Date: Thu, 27 Feb 2020 11:10:43 +0100 Subject: [PATCH] esthetic changes --- annotation/Tools/NCBI/ncbi_get_reference_data.pl | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/annotation/Tools/NCBI/ncbi_get_reference_data.pl b/annotation/Tools/NCBI/ncbi_get_reference_data.pl index 4a103edac..afbd7ad21 100755 --- a/annotation/Tools/NCBI/ncbi_get_reference_data.pl +++ b/annotation/Tools/NCBI/ncbi_get_reference_data.pl @@ -34,7 +34,7 @@ "l|list" => \$list, "outdir=s" => \$outdir, "f|format=s" => \$format, - "o|organisms=s" => \$organisms, + "organisms=s" => \$organisms, "db|dbs=s" => \$dbs, "o|output|outfile=s" => \$outfile)) { @@ -61,7 +61,7 @@ if (! defined($organisms) ){ pod2usage( { -message => "$header\nAt least 1 parameter is mandatory:\nInput organisms (-o species1:species2:species3).\n\n". - "Ouptut is optional. Look at the help documentation to know more.\n", + "Output is optional. Look at the help documentation to know more.\n", -verbose => 0, -exitval => 1 } ); } @@ -180,7 +180,7 @@ =head1 OPTIONS List of all available databases -=item B<-o> or B<--organisms> +=item B<--organisms> The names of the species to query data from. Species name format: Genus_species (e.g. Gallus_gallus). When querying several organisms please follow this nomenclature: species1:species2:species3