diff --git a/.DS_Store b/.DS_Store deleted file mode 100644 index 626bd0a..0000000 Binary files a/.DS_Store and /dev/null differ diff --git a/.gitignore b/.gitignore index 388271b..aad649e 100644 --- a/.gitignore +++ b/.gitignore @@ -30,3 +30,5 @@ index.json # Logging files *.log + +.DS_Store diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 5f9e9a7..898df52 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -17,7 +17,9 @@ repos: rev: v0.7.2 hooks: - id: ruff + args: [--config, pyproject.toml] - id: ruff-format + args: [--config, pyproject.toml] - repo: local hooks: - id: validate-schema diff --git a/poetry.lock b/poetry.lock index c06d61a..b904f48 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. 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531f3be..f3fa5e1 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -5,8 +5,16 @@ readme = "README.md" description = "" authors = ["ai-validatie-team "] repository = "https://github.com/MinBZK/task-registry" -keywords = ["AI", "Validation", "Instrument", "Task", "Registry"] +keywords = ["AI", "Validation", "Instrument", "Requirement", "Measure", "Task", "Registry"] license = "EUPL-1.2" +classifiers = [ + "Development Status :: Alpha", + "Framework :: FastAPI", + "Topic :: Software Development :: Libraries :: Python Modules", + "Programming Language :: Python :: 3", + "Topic :: Scientific/Engineering :: Artificial Intelligence", + "Typing :: Typed" +] packages = [ { include = "task_registry" } ] @@ -48,7 +56,7 @@ types-pyyaml = "^6.0.12.20240724" # Ruff settings: https://docs.astral.sh/ruff/configuration/ [tool.ruff] line-length = 120 -target-version = "py311" +target-version = "py312" src = ["task_registry", "tests", "script"] include = ['script/validate'] diff --git a/task_registry/api/main.py b/task_registry/api/main.py index 5bebdc7..4ffc9f7 100644 --- a/task_registry/api/main.py +++ b/task_registry/api/main.py @@ -1,7 +1,8 @@ from fastapi import APIRouter -from task_registry.api.routes import health, instruments, urns +from task_registry.api.routes import health, instruments, measures, requirements api_router = APIRouter() api_router.include_router(health.router, prefix="/health", tags=["health"]) api_router.include_router(instruments.router, prefix="/instruments", tags=["instruments"]) -api_router.include_router(urns.router, prefix="/urns", tags=["urns"]) +api_router.include_router(measures.router, prefix="/measures", tags=["measures"]) +api_router.include_router(requirements.router, prefix="/requirements", tags=["requirements"]) diff --git a/task_registry/api/routes/instruments.py b/task_registry/api/routes/instruments.py index 989c09e..2741230 100644 --- a/task_registry/api/routes/instruments.py +++ b/task_registry/api/routes/instruments.py @@ -1,8 +1,9 @@ import logging -from fastapi import APIRouter +from fastapi import APIRouter, HTTPException from fastapi.responses import JSONResponse -from task_registry.lifespan import CACHED_DATA +from task_registry.data import Index, Tasks +from task_registry.lifespan import CACHED_REGISTRY router = APIRouter() @@ -11,9 +12,29 @@ @router.get( "/", - summary="Overview of all the Instruments in the Task Registry", - description="This endpoint returns a JSON with all the Instruments in the Task Registry.", + summary="Overview of all the instruments in the task registry.", + description="This endpoint returns a JSON with all the instruments in the task registry.", responses={200: {"description": "JSON with all the instruments."}}, ) -async def get_root() -> JSONResponse: - return JSONResponse(content=CACHED_DATA["index"]) +async def get_instruments() -> Index: + return CACHED_REGISTRY.get_tasks_index(Tasks.INSTRUMENTS) + + +# Optional parameter 'version' is included, but not used. In a new ticket +# versioning of instruments should be handled. +@router.get( + "/urn/{urn}", + summary="Get the contents of the specific instrument which has given URN.", + description="This endpoint returns a JSON with the contents of a specific instrument identified by URN" + " and version.", + responses={ + 200: {"description": "JSON with the specific contents of the instrument."}, + 400: {"description": "The URN does not exist or is not valid."}, + }, +) +async def get_instrument(urn: str, version: str = "latest") -> JSONResponse: + try: + content = CACHED_REGISTRY.get_task(urn, Tasks.INSTRUMENTS) + return JSONResponse(content=content) + except KeyError as err: + raise HTTPException(status_code=400, detail=f"invalid urn: {urn}") from err diff --git a/task_registry/api/routes/measures.py b/task_registry/api/routes/measures.py new file mode 100644 index 0000000..8651552 --- /dev/null +++ b/task_registry/api/routes/measures.py @@ -0,0 +1,40 @@ +import logging + +from fastapi import APIRouter, HTTPException +from fastapi.responses import JSONResponse +from task_registry.data import Index, Tasks +from task_registry.lifespan import CACHED_REGISTRY + +router = APIRouter() + +logger = logging.getLogger(__name__) + + +@router.get( + "/", + summary="Overview of all the measures in the task registry", + description="This endpoint returns a JSON with all the measures in the task registry.", + responses={200: {"description": "JSON with all the measures."}}, +) +async def get_measures() -> Index: + return CACHED_REGISTRY.get_tasks_index(Tasks.MEASURES) + + +# Optional parameter 'version' is included, but not used. In a new ticket +# versioning of measures should be handled. +@router.get( + "/urn/{urn}", + summary="Get the contents of the specific measure by URN", + description="This endpoint returns a JSON with the contents of a specific measure identified by URN" + " and version.", + responses={ + 200: {"description": "JSON with the specific contents of the measure."}, + 400: {"description": "The URN does not exist or is not valid."}, + }, +) +async def get_measure(urn: str, version: str = "latest") -> JSONResponse: + try: + content = CACHED_REGISTRY.get_task(urn, Tasks.MEASURES) + return JSONResponse(content=content) + except KeyError as err: + raise HTTPException(status_code=400, detail=f"invalid urn: {urn}") from err diff --git a/task_registry/api/routes/requirements.py b/task_registry/api/routes/requirements.py new file mode 100644 index 0000000..a997973 --- /dev/null +++ b/task_registry/api/routes/requirements.py @@ -0,0 +1,40 @@ +import logging + +from fastapi import APIRouter, HTTPException +from fastapi.responses import JSONResponse +from task_registry.data import Index, Tasks +from task_registry.lifespan import CACHED_REGISTRY + +router = APIRouter() + +logger = logging.getLogger(__name__) + + +@router.get( + "/", + summary="Overview of all the requirements in the task registry.", + description="This endpoint returns a JSON with all the requirements in the task registry.", + responses={200: {"description": "JSON with all the requirements."}}, +) +async def get_requirements() -> Index: + return CACHED_REGISTRY.get_tasks_index(Tasks.REQUIREMENTS) + + +# Optional parameter 'version' is included, but not used. In a new ticket +# versioning of requirements should be handled. +@router.get( + "/urn/{urn}", + summary="Get the contents of the specific instrument which has given URN.", + description="This endpoint returns a JSON with the contents of a specific instrument identified by URN" + " and version.", + responses={ + 200: {"description": "JSON with the specific contents of the instrument."}, + 400: {"description": "The URN does not exist or is not valid."}, + }, +) +async def get_requirement(urn: str, version: str = "latest") -> JSONResponse: + try: + content = CACHED_REGISTRY.get_task(urn, Tasks.REQUIREMENTS) + return JSONResponse(content=content) + except KeyError as err: + raise HTTPException(status_code=400, detail=f"invalid urn: {urn}") from err diff --git a/task_registry/api/routes/urns.py b/task_registry/api/routes/urns.py deleted file mode 100644 index 83d61de..0000000 --- a/task_registry/api/routes/urns.py +++ /dev/null @@ -1,31 +0,0 @@ -import logging - -from fastapi import APIRouter, Depends, HTTPException -from fastapi.responses import JSONResponse -from task_registry.lifespan import CACHED_DATA - -router = APIRouter() - -logger = logging.getLogger(__name__) - - -def _validate_urn(urn: str) -> str: - if urn not in CACHED_DATA["urn_mapper"]: - raise HTTPException(status_code=400, detail=f"Invalid urn: {urn}") - return urn - - -# Optional parameter 'version' is included, but not used. In a new ticket -# versioning of instruments should be handled. -@router.get( - "/", - summary="Get the contents of the specific Instrument by URN", - description="This endpoint returns a JSON with the contents of a specific Instrument identified by URN" - " and version.", - responses={ - 200: {"description": "JSON with the specific contents of the Instrument."}, - 400: {"description": "The URN does not exist or is not valid."}, - }, -) -async def get_instrument(urn: str = Depends(_validate_urn), version: str = "latest") -> JSONResponse: - return JSONResponse(content=CACHED_DATA["urn_mapper"][urn]) diff --git a/task_registry/core/config.py b/task_registry/core/config.py index f2bbf8a..c4290f8 100644 --- a/task_registry/core/config.py +++ b/task_registry/core/config.py @@ -10,9 +10,14 @@ # Self type is not available in Python 3.10 so create our own with TypeVar SelfSettings = TypeVar("SelfSettings", bound="Settings") -PROJECT_NAME: str = "TR" -PROJECT_DESCRIPTION: str = "Task Registry" +PROJECT_NAME: str = "Task Registry" +PROJECT_SUMMARY: str = """ +API service for the task registry. This API can be used to retrieve +measures, requirements and instruments in this registry. +""" VERSION: str = "0.1.0" # replace in CI/CD pipeline +LICENSE_NAME: str = "EUPL-1.2 license" +LICENSE_URL: str = "https://eupl.eu/1.2/en/" class Settings(BaseSettings): diff --git a/task_registry/data.py b/task_registry/data.py index d5e0474..3f7f0a2 100644 --- a/task_registry/data.py +++ b/task_registry/data.py @@ -1,67 +1,103 @@ import logging import os +from enum import StrEnum from pathlib import Path from typing import Any import yaml +from pydantic import BaseModel logger = logging.getLogger(__name__) -def get_file_size(file_path: str) -> int: - return os.path.getsize(file_path) # pragma: no cover +class Tasks(StrEnum): + INSTRUMENTS = "instruments" + REQUIREMENTS = "requirements" + MEASURES = "measures" -def create_urn_mappper(entries: list[dict[str, Any]]) -> dict[str, Any]: - urn_mapper: dict[str, Any] = {} - for instrument in entries: - path = Path(instrument["path"]) - try: - with open(str(path)) as f: - urn_mapper[instrument["urn"]] = yaml.safe_load(f) - except FileNotFoundError: - logger.exception(f"Instrument file with path {path} not found.") # pragma: no cover +class Link(BaseModel): + self: str - except yaml.YAMLError: - logger.exception(f"Instrument file with path {path} could not be parsed.") # pragma: no cover - return urn_mapper +class FileInfo(BaseModel): + type: str + size: int + name: str + path: str + urn: str + download_url: str + _links: Link + + +class Index(BaseModel): + type: str + size: int + name: str + path: str + download_url: str + _links: Link + entries: list[FileInfo] + + +class CachedRegistry: + def __init__(self) -> None: + self.index_cache: dict[Tasks, Index] = {} + self.tasks_cache: dict[tuple[str, Tasks], Any] = {} + + def add_tasks(self, tasks: Tasks) -> None: + index = generate_index(tasks) + self.index_cache[tasks] = index + + for task in index.entries: + path = Path(task.path) + try: + with open(str(path)) as f: + self.tasks_cache[(task.urn, tasks)] = yaml.safe_load(f) + except FileNotFoundError: + logger.exception(f"Task file with path {path} not found.") # pragma: no cover + except yaml.YAMLError: + logger.exception(f"Task file with path {path} could not be parsed.") # pragma: no cover + + def get_tasks_index(self, tasks: Tasks) -> Index: + return self.index_cache[tasks] + + def get_task(self, urn: str, tasks: Tasks) -> dict[str, Any]: + return self.tasks_cache[(urn, tasks)] def generate_index( + tasks: Tasks, base_url: str = "https://task-registry.apps.digilab.network", - directory: str = "instruments", -) -> dict[str, Any]: - index: dict[str, Any] = { - "type": "dir", - "size": 0, - "name": directory, - "path": directory, - "download_url": f"{base_url}/instruments", - "_links": { - "self": f"{base_url}/instruments", - }, - "entries": [], - } - - for root, _, files in os.walk(directory): +) -> Index: + tasks_url = f"{base_url}/{tasks}" + entries: list[FileInfo] = [] + + for root, _, files in os.walk(tasks): for file in files: if file.endswith(".yaml"): file_path = os.path.join(root, file) relative_path = file_path.replace("\\", "/") with open(file_path) as f: - instrument = yaml.safe_load(f) - file_info = { - "type": "file", - "size": get_file_size(file_path), - "name": file, - "path": relative_path, - "urn": instrument["urn"], - "download_url": f"{base_url}/urns/?urn={instrument['urn']}", - "_links": { - "self": f"{base_url}/urns/?urn={instrument['urn']}", - }, - } - index["entries"].append(file_info) - - return index + task = yaml.safe_load(f) + task_url = f"{tasks_url}/urn/{task['urn']}" + file_info = FileInfo( + type="file", + size=os.path.getsize(file_path), + name=file, + path=relative_path, + urn=task["urn"], + download_url=task_url, + _links=Link(self=task_url), + ) + entries.append(file_info) + + return Index( + type="dir", + size=0, + name=tasks.value, + path=tasks.value, + download_url=tasks_url, + _links=Link(self=tasks_url), + entries=entries, + ) diff --git a/task_registry/lifespan.py b/task_registry/lifespan.py index 6968f17..7a02807 100644 --- a/task_registry/lifespan.py +++ b/task_registry/lifespan.py @@ -1,14 +1,13 @@ import logging from collections.abc import AsyncGenerator from contextlib import asynccontextmanager -from typing import Any from fastapi import FastAPI from task_registry.core.config import PROJECT_NAME, VERSION, get_settings from task_registry.core.log import configure_logging -from task_registry.data import create_urn_mappper, generate_index +from task_registry.data import CachedRegistry, Tasks -CACHED_DATA: dict[str, Any] = {} +CACHED_REGISTRY = CachedRegistry() configure_logging(get_settings().LOGGING_LEVEL, get_settings().LOGGING_CONFIG) @@ -18,9 +17,12 @@ @asynccontextmanager async def lifespan(app: FastAPI) -> AsyncGenerator[None, None]: logger.info(f"Starting {PROJECT_NAME} version {VERSION}") - CACHED_DATA["index"] = generate_index() - CACHED_DATA["urn_mapper"] = create_urn_mappper(CACHED_DATA["index"]["entries"]) + + CACHED_REGISTRY.add_tasks(Tasks.INSTRUMENTS) + CACHED_REGISTRY.add_tasks(Tasks.MEASURES) + CACHED_REGISTRY.add_tasks(Tasks.REQUIREMENTS) + yield - CACHED_DATA.clear() + logger.info(f"Stopping application {PROJECT_NAME} version {VERSION}") logging.shutdown() diff --git a/task_registry/server.py b/task_registry/server.py index 450fc62..f117c8f 100644 --- a/task_registry/server.py +++ b/task_registry/server.py @@ -1,6 +1,6 @@ from fastapi import FastAPI from task_registry.api.main import api_router -from task_registry.core.config import PROJECT_DESCRIPTION, PROJECT_NAME, VERSION +from task_registry.core.config import LICENSE_NAME, LICENSE_URL, PROJECT_NAME, PROJECT_SUMMARY, VERSION from task_registry.lifespan import lifespan @@ -8,13 +8,12 @@ def create_app() -> FastAPI: app = FastAPI( lifespan=lifespan, title=PROJECT_NAME, - summary=PROJECT_DESCRIPTION, + summary=PROJECT_SUMMARY, version=VERSION, + license_info={"name": LICENSE_NAME, "url": LICENSE_URL}, docs_url="/", ) - app.include_router(api_router) - return app diff --git a/tests/api/routes/test_instruments.py b/tests/api/routes/test_instruments.py index c7bebb9..e4f553d 100644 --- a/tests/api/routes/test_instruments.py +++ b/tests/api/routes/test_instruments.py @@ -9,3 +9,23 @@ def test_get_main_page(client: TestClient) -> None: assert response.status_code == 200 assert response.headers["content-type"] == "application/json" assert b'{"type":"dir","size":0,"name":"instruments","path":"instruments"' in response.content.lower() + + +def test_get_urn(client: TestClient) -> None: + # when + response = client.get("/instruments/urn/test_urn") + + # then + assert response.status_code == 200 + assert response.headers["content-type"] == "application/json" + assert b'{"urn":"test_urn"}' in response.content.lower() + + +def test_get_nonexistent_urn(client: TestClient) -> None: + # when + response = client.get("/instruments/urn/idonotexist") + + # then + assert response.status_code == 400 + assert response.headers["content-type"] == "application/json" + assert b'{"detail":"invalid urn: idonotexist"}' in response.content.lower() diff --git a/tests/api/routes/test_measures.py b/tests/api/routes/test_measures.py new file mode 100644 index 0000000..eef319e --- /dev/null +++ b/tests/api/routes/test_measures.py @@ -0,0 +1,31 @@ +from fastapi.testclient import TestClient + + +def test_get_main_page(client: TestClient) -> None: + # when + response = client.get("/measures/") + + # then + assert response.status_code == 200 + assert response.headers["content-type"] == "application/json" + assert b'{"type":"dir","size":0,"name":"measures","path":"measures"' in response.content.lower() + + +def test_get_urn(client: TestClient) -> None: + # when + response = client.get("/measures/urn/test_urn") + + # then + assert response.status_code == 200 + assert response.headers["content-type"] == "application/json" + assert b'{"urn":"test_urn"}' in response.content.lower() + + +def test_get_nonexistent_urn(client: TestClient) -> None: + # when + response = client.get("/measures/urn/idonotexist") + + # then + assert response.status_code == 400 + assert response.headers["content-type"] == "application/json" + assert b'{"detail":"invalid urn: idonotexist"}' in response.content.lower() diff --git a/tests/api/routes/test_requirements.py b/tests/api/routes/test_requirements.py new file mode 100644 index 0000000..f6e231e --- /dev/null +++ b/tests/api/routes/test_requirements.py @@ -0,0 +1,31 @@ +from fastapi.testclient import TestClient + + +def test_get_main_page(client: TestClient) -> None: + # when + response = client.get("/requirements/") + + # then + assert response.status_code == 200 + assert response.headers["content-type"] == "application/json" + assert b'{"type":"dir","size":0,"name":"requirements","path":"requirements"' in response.content.lower() + + +def test_get_urn(client: TestClient) -> None: + # when + response = client.get("/requirements/urn/test_urn") + + # then + assert response.status_code == 200 + assert response.headers["content-type"] == "application/json" + assert b'{"urn":"test_urn"}' in response.content.lower() + + +def test_get_nonexistent_urn(client: TestClient) -> None: + # when + response = client.get("/requirements/urn/idonotexist") + + # then + assert response.status_code == 400 + assert response.headers["content-type"] == "application/json" + assert b'{"detail":"invalid urn: idonotexist"}' in response.content.lower() diff --git a/tests/api/routes/test_urn.py b/tests/api/routes/test_urn.py deleted file mode 100644 index 4c062ee..0000000 --- a/tests/api/routes/test_urn.py +++ /dev/null @@ -1,21 +0,0 @@ -from fastapi.testclient import TestClient - - -def test_get_urn(client: TestClient) -> None: - # when - response = client.get("/urns/?urn=test_urn") - - # then - assert response.status_code == 200 - assert response.headers["content-type"] == "application/json" - assert b'{"urn":"test_urn"}' in response.content.lower() - - -def test_get_nonexistent_urn(client: TestClient) -> None: - # when - response = client.get("/urns/?urn=nonexisting_urn") - - # then - assert response.status_code == 400 - assert response.headers["content-type"] == "application/json" - assert b'{"detail":"invalid urn: nonexisting_urn"}' in response.content.lower() diff --git a/tests/conftest.py b/tests/conftest.py index 8f8d82a..d7aafdf 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -8,10 +8,12 @@ logger = logging.getLogger(__name__) +MOCK_TASK = {"urn": "test_urn"} + @pytest.fixture def _mock_open_file() -> Generator[None, None, None]: # type: ignore - with patch("builtins.open", mock_open(read_data="{'urn':'test_urn'}")): + with patch("builtins.open", mock_open(read_data=f"{MOCK_TASK}")): yield diff --git a/tests/test_data.py b/tests/test_data.py index 0bdee16..00bd32f 100644 --- a/tests/test_data.py +++ b/tests/test_data.py @@ -1,26 +1,47 @@ import logging -from typing import Any +from unittest.mock import mock_open, patch from task_registry import data +from tests.conftest import MOCK_TASK logger = logging.getLogger(__name__) -TEST_INDEX: dict[str, Any] = { - "_links": {"self": "ourapi.io/instruments"}, - "download_url": "ourapi.io/instruments", - "entries": [], - "name": "test", - "path": "test", - "size": 0, - "type": "dir", -} +def test_generate_index() -> None: + filesize = 100 + dir = "/tasks" + filename = "task_1.yaml" + base_url = "https://ourapi.nl" + task = data.Tasks.INSTRUMENTS -def test_create_urn_mappper() -> None: - urn_mapper = data.create_urn_mappper(entries=TEST_INDEX["entries"]) - assert urn_mapper == {} + with ( + patch("os.walk") as mock_walk, + patch("os.path.getsize") as mock_getsize, + patch("builtins.open", mock_open(read_data=f"{MOCK_TASK}")), + ): + mock_walk.return_value = [(dir, [], [filename])] + mock_getsize.return_value = filesize + index = data.generate_index(task, f"{base_url}") -def test_generate_index() -> None: - index = data.generate_index(base_url="ourapi.io", directory="test") - assert index == TEST_INDEX + expected_index = data.Index( + type="dir", + size=0, + name=task.value, + path=task.value, + download_url=f"{base_url}/instruments", + _links=data.Link(self=base_url), + entries=[ + data.FileInfo( + type="file", + size=filesize, + name=filename, + path=f"{dir}/{filename}", + urn=MOCK_TASK["urn"], + download_url=f'{base_url}/instruments/urn/{MOCK_TASK["urn"]}', + _links=data.Link(self=f'{base_url}/instruments/urn/{MOCK_TASK["urn"]}'), + ) + ], + ) + + assert index == expected_index