diff --git a/.Rbuildignore b/.Rbuildignore index 014906f..7a42fac 100644 --- a/.Rbuildignore +++ b/.Rbuildignore @@ -6,3 +6,4 @@ ^LICENSES_THIRD_PARTY$ ^LICENSE$ ^\.github$ +^cran-comments\.md$ diff --git a/DESCRIPTION b/DESCRIPTION index 2eeabb5..6741cb1 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,6 +1,6 @@ Package: gMCPLite Title: Lightweight Graph Based Multiple Comparison Procedures -Version: 0.1.0 +Version: 0.1.1 Authors@R: c( person("Yalin", "Zhu", email = "yalin.zhu@merck.com", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-3830-8660")), @@ -17,8 +17,11 @@ Authors@R: c( person("Merck & Co., Inc., Rahway, NJ, USA and its affiliates", role = "cph") ) Description: A lightweight fork of 'gMCP' with functions for graphical - described multiple test procedures. Implements a flexible function - using 'ggplot2' to create multiplicity graph visualizations. + described multiple test procedures introduced in + Bretz et al. (2009) and + Bretz et al. (2011) . + Implements a flexible function using 'ggplot2' to create + multiplicity graph visualizations. Contains instructions of multiplicity graph and graphical testing for group sequential design, with necessary unit testing using 'testthat'. License: GPL-3 diff --git a/NEWS.md b/NEWS.md index 23a69e9..1ab2dbf 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,15 @@ +# gMCPLite 0.1.1 + +## Improvements + +- Added method references DOI to the description field of the `DESCRIPTION` file. +- Removed redundant `\dontrun{}` from examples. +- Replaced `cat()` with `message()` where suppression options like `verbose` are + not available, except for printing raw R Markdown content in vignettes, + which requires `cat()`. +- Removed setting `options(warn=-1)` and `options(warn=0)` in function. +- Reset the user's `options()` in vignettes after changing it. + # gMCPLite 0.1.0 - Created a fork from gMCP 0.8-15 and removed Java dependencies. diff --git a/cran-comments.md b/cran-comments.md new file mode 100644 index 0000000..6fb331c --- /dev/null +++ b/cran-comments.md @@ -0,0 +1,13 @@ +This is a new release that fixed the issues in v0.1.0 identified by CRAN. + +## R CMD check results + +0 errors | 0 warnings | 1 note + +## Improvements + + * Added method references DOI to the description field of the DESCRIPTION file. + * Removed redundant \dontrun{} from examples. + * Replaced cat() with message() where suppression options like verbose are not available, except for printing raw R Markdown content in vignettes, which requires cat(). + * Removed setting options(warn=-1) and options(warn=0) in function. + * Reset the user's options() in vignettes after changing it. diff --git a/man/gMCPLite-package.Rd b/man/gMCPLite-package.Rd index f5ab279..2e689e2 100644 --- a/man/gMCPLite-package.Rd +++ b/man/gMCPLite-package.Rd @@ -8,7 +8,7 @@ \description{ \if{html}{\figure{logo.png}{options: style='float: right' alt='logo' width='120'}} -A lightweight fork of 'gMCP' with functions for graphical described multiple test procedures. Implements a flexible function using 'ggplot2' to create multiplicity graph visualizations. Contains instructions of multiplicity graph and graphical testing for group sequential design, with necessary unit testing using 'testthat'. +A lightweight fork of 'gMCP' with functions for graphical described multiple test procedures introduced in Bretz et al. (2009) \doi{10.1002/sim.3495} and Bretz et al. (2011) \doi{10.1002/bimj.201000239}. Implements a flexible function using 'ggplot2' to create multiplicity graph visualizations. Contains instructions of multiplicity graph and graphical testing for group sequential design, with necessary unit testing using 'testthat'. } \seealso{ Useful links: