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Can you explain more about the "inversion.txt" in the 1_QC_GWAS folder #4

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ulysses1881826 opened this issue Oct 12, 2019 · 8 comments
Open

Can you explain more about the "inversion.txt" in the 1_QC_GWAS folder #4

ulysses1881826 opened this issue Oct 12, 2019 · 8 comments

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@ulysses1881826
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Thank you for your tutorial in advance.
I have some confusion about the "inversion.txt" in the 1_QC_GWAS folder. I know it is for excluding high inversion regions. However, where is the "inversion.txt" come from? Since there are many other regions of high linkage disequilibrium, why you just choose these regions?
Can you give some more detailed explanation here?
Thank you~
@KarthickRajaNarayanan
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I have the same doubt. Did you get the answer?

Thanks.

@blmaldonado
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following

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@Xiao-lin-Liu
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following

@FedericoBottoni
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following as well

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@Clemence50421
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following as well

@NgocNam1512
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following

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@usernicai
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following

@PollyRosy
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following as well. I am not sure if I should generate one according to my dataset? Or I can just use a fake file and do not exclude anything

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@FedericoBottoni @ulysses1881826 @NgocNam1512 @Xiao-lin-Liu @KarthickRajaNarayanan @blmaldonado @Clemence50421 @usernicai @PollyRosy