From c9cfcacb626b1221094fb3490ea7bac0fd625372 Mon Sep 17 00:00:00 2001 From: Manu Setty Date: Tue, 13 Sep 2016 21:54:48 -0400 Subject: [PATCH] Create README.md --- README.md | 9 +++++++++ 1 file changed, 9 insertions(+) create mode 100644 README.md diff --git a/README.md b/README.md new file mode 100644 index 0000000..9322a12 --- /dev/null +++ b/README.md @@ -0,0 +1,9 @@ +# ChIPKernels + +ChIPKernels is an R package for building different string kernels used for DNA Sequence analysis. A dictionary of the desired kernel must be built and this dictionary can be used for determining kernels for DNA Sequences. This package has been tested with R 3.2 + +The following representations are supported. + 1. Mismatch/Dimismatch kernel: ```build.mismatch.dictionary``` + 2. Positional wildcard kernel: ```build.wildcard.dictionary``` + +After the dictionary is built, use the ```build.features.kernels``` function to determine the feature matrix and kernel for DNA Sequences.