Code

Peptdeep latest#35

Code

Merged

jalew188 merged 52 commits intodevelopmentMannLabs/alphaviz:developmentfrom peptdeep_latestMannLabs/alphaviz:peptdeep_latestCopy head branch name to clipboardDec 19, 2023

+407,910-36

Commits

Commits on Sep 13, 2022

• ms_plot

  jalew188

  committed
  78b0b26

• MS_Plotter.model_mgr.transfer_learn()

  jalew188

  committed
  fd007b1

• MS_Plotter.model_mgr.transfer_learn()

  jalew188

  committed
  043096c

• easier access data

  jalew188

  committed
  10f8b98

• FIX plotly_hovermode

  jalew188

  committed
  9fa28a1

Commits on Sep 14, 2022

• minor updates

  jalew188

  committed
  a3cf678

• update to peptdeep latest version

  jalew188

  committed
  4f8e52c

Commits on Sep 15, 2022

• better bbplot

  jalew188

  committed
  dbd883c

Commits on Sep 16, 2022

• reader_utils

  jalew188

  committed
  d6812bd

Commits on Sep 17, 2022

• Feng contrib plots

  jalew188

  committed
  ed2eea4

• rm alphatims version limit

  jalew188

  committed
  8c455d8

Commits on Sep 18, 2022

• add_shape->update_layout

  jalew188

  committed
  ec8f2b9

• include_precursor in xic plot

  jalew188

  committed
  e132a9e

• fig.show('svg')

  jalew188

  committed
  3530d8a

• refine PCC calc

  jalew188

  committed
  7a8297b

Commits on Sep 21, 2022

• minor changes

  jalew188

  committed
  cb10e38

Commits on Sep 25, 2022

• mDIa

  jalew188

  committed
  30414b2

Commits on Sep 26, 2022

• integrated alpharaw

  jalew188

  committed
  c7d111d

Commits on Sep 28, 2022

• mDIA support

  jalew188

  committed
  1fea08e

• pcc

  jalew188

  committed
  9fdc564

Commits on Sep 30, 2022

• minor update

  jalew188

  committed
  eb528bc

• view_dim=rt or im

  jalew188

  committed
  74b6798

Commits on Oct 1, 2022

• add zeros

  jalew188

  committed
  c441c1f

Commits on Oct 4, 2022

• minor updates

  jalew188

  committed
  de9661f

Commits on Oct 5, 2022

• tims uint16 to float

  jalew188

  committed
  a7facf6

Commits on Oct 7, 2022

• FIX make_subplots import

  jalew188

  committed
  fcbc6db

• legend_group

  jalew188

  committed
  bd845d2

• legend_group M0 seperated

  jalew188

  committed
  965c099

Commits on Oct 8, 2022

• int(charge)

  jalew188

  committed
  2f7a044

• FIX no peaks matched MS2

  jalew188

  committed
  5655f76

• FIX no peaks matched MS2

  jalew188

  committed
  4dffb59

• FIX no peaks matched MS2

  jalew188

  committed
  b58e869

• FIX no peaks matched MS2

  jalew188

  committed
  a83874c

Commits on Oct 9, 2022

• FIX empty matching

  jalew188

  committed
  b22c1f9

• rt_tol->rt_win

  jalew188

  committed
  8ef20fe

Commits on Oct 12, 2022

• minor

  jalew188

  committed
  602c94e

Commits on Oct 27, 2022

• ready for PR

  jalew188

  committed
  85ed0dc

Commits on Oct 28, 2022

• find both left and left closest specs

  jalew188

  committed
  56a1d22

• Merge pull request #32 from jalew188/peptdeep_latest

  Show description for a196076
  EugeniaVoytik

  authored
  a196076

Commits on Jan 17, 2023

• Merge branch 'peptdeep_latest' of https://github.com/mannlabs/alphaviz into peptdeep_latest

  jalew188

  committed
  14e2638

• mz slicing

  jalew188

  committed
  4b92d58

• update ms2 plots

  jalew188

  committed
  cee7225

Commits on Jan 19, 2023

• frag_end_idx->frag_stop_idx; flex APIs

  jalew188

  committed
  2feb23d

• rename

  jalew188

  committed
  9e4031b

Commits on Jan 20, 2023

• use alphabase.match.match_utils instead of peptdeep's

  jalew188

  committed
  11d56dd

Commits on Feb 14, 2023

• use ppm or not

  jalew188

  committed
  42a3f65

Commits on Dec 19, 2023

• use alpharaw.viz for thermo

  zhouxiexuan

  committed
  7631f51

• add example notebook

  zhouxiexuan

  committed
  8e78b99

• update

  zhouxiexuan

  committed
  59c9b83

• peptdeep upgraded

  zhouxiexuan

  committed
  1ca8265

• add xic plot example

  zhouxiexuan

  committed
  32448ef

• add xic plot example

  zhouxiexuan

  committed
  346d736