groupind replicates from sample names

[MuthusaravananS]

Dear Developers,
My data consists of treatment VS control each consisting of 3 replicates, im using output from MAXquant, on how to group replicates int control and treatment groups during data analysis in alphapeptststs. PLease help this query. Thankyou in advance.
Best regards,
Muthu

[JuliaS92]

Hello @MuthusaravananS,
you need to supply a metadata.xlsx with a second column for that grouping (you can download a template when you upload the data). The column header could be condition and then each row either treatment or control. Detecting this automatically from the sample names is something we might implement in the future, but is complicated as is does not work universally for all inputs and experimental designs.