Refactor volcano iii #269
Workflow file for this run
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# This workflow will install Python dependencies, run tests and lint with a variety of Python versions | |
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python | |
name: Build and run tests | |
on: | |
push: | |
branches: [ main, development ] | |
pull_request: | |
jobs: | |
pre-commit: | |
name: Run all pre-commit hooks | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
- uses: pre-commit/[email protected] | |
get-code-review-input: | |
runs-on: ubuntu-latest | |
#if: contains(github.event.pull_request.labels.*.name, 'code-review') | |
steps: | |
- uses: MannLabs/alphashared/actions/get-code-review-input@v1 | |
with: | |
GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
PR_NUMBER: ${{ github.event.number }} | |
build-and-test: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: ["3.8", "3.9", "3.10"] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Pip installation | |
run: | | |
python -m pip install --upgrade pip | |
pip install . | |
- name: Install additional dependencies for tests | |
run: | | |
pip install -r requirements_dev.txt | |
- name: Print pip freeze | |
run: | | |
pip freeze | |
- name: Run tests | |
run: | | |
coverage run -m pytest | |
- name: Upload Coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
- name: Run notebooks | |
run: | | |
python3 -m ipykernel install --user | |
# TODO add the excluded notebook | |
TEST_NBS=$(find ./nbs -name "*.ipynb" | grep -v "ramus_2016.ipynb") | |
python -m pytest --nbmake $(echo $TEST_NBS) |