Merge pull request #188 from MannLabs/183-tutorial-immunopeptidomics

183 tutorial immunopeptidomics
MannLabs · Aug 4, 2024 · 768addf · 768addf
2 parents 7fed088 + 7d90381
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diff --git a/docs/nbs/tutorial_HLA_prediction.rst b/docs/nbs/tutorial_HLA_prediction.rst
diff --git a/docs/notebooks.rst b/docs/notebooks.rst
@@ -6,10 +6,10 @@ Tutorials and notebooks about how to use AlphaPeptDeep
 .. toctree::
    :maxdepth: 1
 
+   tutorials/tutorial_immunopeptidomics
    nbs/tutorial_models_from_scratch
    nbs/tutorial_speclib_from_fasta
    nbs/alphapeptdeep_hdf_to_tsv
-   nbs/tutorial_HLA_prediction
    nbs/tutorial_model_manager
    nbs/tutorial_building_rt_model
    nbs/tutorial_building_ccs_model
diff --git a/docs/tutorials/example.fasta b/docs/tutorials/example.fasta
@@ -0,0 +1,9 @@
+>tr|A0A024R161|A0A024R161_HUMAN Guanine nucleotide-binding protein subunit gamma OS=Homo sapiens GN=DNAJC25-GNG10 PE=3 SV=1
+MGAPLLSPGWGAGAAGRRWWMLLAPLLPALLLVRPAGALVEGLYCGTRDCYEVLGVSRSA
+GKAEIARAYRQLARRYHPDRYRPQPGDEGPGRTPQSAEEAFLLVATAYETLKVSQAAAEL
+QQYCMQNACKDALLVGVPAGSNPFREPRSCALL
+>tr|A0A024RAP8|A0A024RAP8_HUMAN HCG2009644, isoform CRA_b OS=Homo sapiens GN=KLRC4-KLRK1 PE=4 SV=1
+MGWIRGRRSRHSWEMSEFHNYNLDLKKSDFSTRWQKQRCPVVKSKCRENASPFFFCCFIA
+VAMGIRFIIMVTIWSAVFLNSLFNQEVQIPLTESYCGPCPKNWICYKNNCYQFFDESKNW
+YESQASCMSQNASLLKVYSKEDQDLLKLVKSYHWMGLVHIPTNGSWQWEDGSILSPNLLT
+IIEMQKGDCALYASSFKGYIENCSTPNTYICMQRTV