Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Create a "global" reference set for a given clade (e.g., one species from each order or family) #8

Open
egreyavis opened this issue Nov 23, 2022 · 0 comments
Open

Create a "global" reference set for a given clade (e.g., one species from each order or family) #8

egreyavis opened this issue Nov 23, 2022 · 0 comments

Comments

@egreyavis
Copy link
Contributor

Assuming we are going with families, this would require:

  • Getting all families for a given clade (e.g., vertebrates)
  • Searching Refseq for mitogenomes in each family and choosing one
  • For families without Refseq mitogenomes, search regular nucleotide database
@egreyavis egreyavis changed the title Create a "global" reprefence set for a given clade (e.g., one species from each order or family) Create a "global" reprerence set for a given clade (e.g., one species from each order or family) Nov 23, 2022
@egreyavis egreyavis changed the title Create a "global" reprerence set for a given clade (e.g., one species from each order or family) Create a "global" reference set for a given clade (e.g., one species from each order or family) Nov 23, 2022
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
1 participant
@egreyavis