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71 add boss solver #72

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RMichae1
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@RMichae1 RMichae1 commented Dec 9, 2024

I've added the base Boss SSK model implementation.

This works fine for SMILES small molecule tasks.

There are some issues with the SELFIES tokenization however, given how the implementation handles string spaces via emukit.

Do we want SELFIES support also?

@RMichae1 RMichae1 linked an issue Dec 9, 2024 that may be closed by this pull request
@miguelgondu
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SMILES support works great and should be enough! I imagine that incorporating SELFIES support wouldn't be as easy, or does BOSS have a nice interface for inputting custom alphabets?

@RMichae1
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There is no custom alphabet support, but we could add som util wrapper for selfies tokenization, based on the official tokenizer. That should already do it.

I see I'm also missing a CI test addition :)

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Add BOSS solver
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