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Hello. Below error is occurring on Augmented_Pathway_Enrichment_Analysis. Possibly, data file is missing. Please check. Thanks.
--------------------------------------------------------------------------- OSError Traceback (most recent call last) /usr/local/lib/python3.8/dist-packages/PIL/Image.py in save(self, fp, format, **params) 2239 try: -> 2240 save_handler(self, fp, filename) 2241 finally: /usr/local/lib/python3.8/dist-packages/PIL/PngImagePlugin.py in _save(im, fp, filename, chunk, save_all) 1361 if hasattr(fp, "flush"): -> 1362 fp.flush() 1363 OSError: [Errno 22] Invalid argument During handling of the above exception, another exception occurred: OSError Traceback (most recent call last) /tmp/ipykernel_18/1098048833.py in <module> 9 library_data, pathways, items = load(file, items, separate=True) 10 results, pvals, results_df = enrichment_analysis(items, library_data, pathways) ---> 11 enrichr_figure(results, pvals, results_df["q value"].tolist(), final_output_file_names, [file], plasma(i*0.25), topk) 12 display(Markdown(f"*Figure {i+1}. Bar chart of the top {topk} enriched terms in {file.replace('_', ' ')} based on p-values, along with their corresponding q-values (written). Colored bars correspond to terms with significant p-values (<0.05). An asterisk next to a q-value indicates the term also has a significant q-value (<0.05)*")) 13 # Download Bar Chart /tmp/ipykernel_18/3204716763.py in enrichr_figure(all_terms, all_pvalues, all_qvalues, plot_names, all_libraries, bar_color, topk) 38 # Save results 39 for plot_name in plot_names: ---> 40 plt.savefig(plot_name, bbox_inches = 'tight') 41 42 # Show plot /usr/local/lib/python3.8/dist-packages/matplotlib/pyplot.py in savefig(*args, **kwargs) 956 def savefig(*args, **kwargs): 957 fig = gcf() --> 958 res = fig.savefig(*args, **kwargs) 959 fig.canvas.draw_idle() # need this if 'transparent=True' to reset colors 960 return res /usr/local/lib/python3.8/dist-packages/matplotlib/figure.py in savefig(self, fname, transparent, **kwargs) 3010 ax.patch._cm_set(facecolor='none', edgecolor='none')) 3011 -> 3012 self.canvas.print_figure(fname, **kwargs) 3013 3014 def ginput(self, n=1, timeout=30, show_clicks=True, /usr/local/lib/python3.8/dist-packages/matplotlib/backend_bases.py in print_figure(self, filename, dpi, facecolor, edgecolor, orientation, format, bbox_inches, pad_inches, bbox_extra_artists, backend, **kwargs) 2312 # force the figure dpi to 72), so we need to set it again here. 2313 with cbook._setattr_cm(self.figure, dpi=dpi): -> 2314 result = print_method( 2315 filename, 2316 facecolor=facecolor, /usr/local/lib/python3.8/dist-packages/matplotlib/backend_bases.py in wrapper(*args, **kwargs) 1641 kwargs.pop(arg) 1642 -> 1643 return func(*args, **kwargs) 1644 1645 return wrapper /usr/local/lib/python3.8/dist-packages/matplotlib/_api/deprecation.py in wrapper(*inner_args, **inner_kwargs) 410 else deprecation_addendum, 411 **kwargs) --> 412 return func(*inner_args, **inner_kwargs) 413 414 DECORATORS[wrapper] = decorator /usr/local/lib/python3.8/dist-packages/matplotlib/backends/backend_agg.py in print_png(self, filename_or_obj, metadata, pil_kwargs, *args) 539 """ 540 FigureCanvasAgg.draw(self) --> 541 mpl.image.imsave( 542 filename_or_obj, self.buffer_rgba(), format="png", origin="upper", 543 dpi=self.figure.dpi, metadata=metadata, pil_kwargs=pil_kwargs) /usr/local/lib/python3.8/dist-packages/matplotlib/image.py in imsave(fname, arr, vmin, vmax, cmap, format, origin, dpi, metadata, pil_kwargs) 1673 pil_kwargs.setdefault("format", format) 1674 pil_kwargs.setdefault("dpi", (dpi, dpi)) -> 1675 image.save(fname, **pil_kwargs) 1676 1677 /usr/local/lib/python3.8/dist-packages/PIL/Image.py in save(self, fp, format, **params) 2242 # do what we can to clean up 2243 if open_fp: -> 2244 fp.close() 2245 2246 def seek(self, frame): OSError: [Errno 22] Invalid argument
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Hello. Below error is occurring on Augmented_Pathway_Enrichment_Analysis.
Possibly, data file is missing. Please check. Thanks.
The text was updated successfully, but these errors were encountered: