diff --git a/latest/_modules/compass/__main__.html b/latest/_modules/compass/__main__.html index a0853e3cf7..21c37d1d09 100644 --- a/latest/_modules/compass/__main__.html +++ b/latest/_modules/compass/__main__.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/cache.html b/latest/_modules/compass/cache.html index 8b904aa3c6..1de950ca7d 100644 --- a/latest/_modules/compass/cache.html +++ b/latest/_modules/compass/cache.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/clean.html b/latest/_modules/compass/clean.html index 6c6f26681f..2fa2351abb 100644 --- a/latest/_modules/compass/clean.html +++ b/latest/_modules/compass/clean.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/config.html b/latest/_modules/compass/config.html index 1f4af7c8fb..2be5854b03 100644 --- a/latest/_modules/compass/config.html +++ b/latest/_modules/compass/config.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/io.html b/latest/_modules/compass/io.html index d53dfca44c..aa0413abaf 100644 --- a/latest/_modules/compass/io.html +++ b/latest/_modules/compass/io.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice.html b/latest/_modules/compass/landice.html index aa39890863..63110f04c5 100644 --- a/latest/_modules/compass/landice.html +++ b/latest/_modules/compass/landice.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/extrapolate.html b/latest/_modules/compass/landice/extrapolate.html index ffea2a55bd..a8df455efa 100644 --- a/latest/_modules/compass/landice/extrapolate.html +++ b/latest/_modules/compass/landice/extrapolate.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/iceshelf_melt.html b/latest/_modules/compass/landice/iceshelf_melt.html index 94411f60a5..b9401201c4 100644 --- a/latest/_modules/compass/landice/iceshelf_melt.html +++ b/latest/_modules/compass/landice/iceshelf_melt.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/mesh.html b/latest/_modules/compass/landice/mesh.html index a7f693b00d..93d0625ca2 100644 --- a/latest/_modules/compass/landice/mesh.html +++ b/latest/_modules/compass/landice/mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/antarctica.html b/latest/_modules/compass/landice/tests/antarctica.html index 36dd23b16e..a3ae55cfce 100644 --- a/latest/_modules/compass/landice/tests/antarctica.html +++ b/latest/_modules/compass/landice/tests/antarctica.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/antarctica/mesh.html b/latest/_modules/compass/landice/tests/antarctica/mesh.html index d62d7b6e79..61f57f83c0 100644 --- a/latest/_modules/compass/landice/tests/antarctica/mesh.html +++ b/latest/_modules/compass/landice/tests/antarctica/mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/antarctica/mesh_gen.html b/latest/_modules/compass/landice/tests/antarctica/mesh_gen.html index 302fa5d432..cafd33b218 100644 --- a/latest/_modules/compass/landice/tests/antarctica/mesh_gen.html +++ b/latest/_modules/compass/landice/tests/antarctica/mesh_gen.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/calving_dt_convergence.html b/latest/_modules/compass/landice/tests/calving_dt_convergence.html index 42d3630b05..9c9a1d7d1c 100644 --- a/latest/_modules/compass/landice/tests/calving_dt_convergence.html +++ b/latest/_modules/compass/landice/tests/calving_dt_convergence.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/calving_dt_convergence/dt_convergence_test.html b/latest/_modules/compass/landice/tests/calving_dt_convergence/dt_convergence_test.html index 920533de4e..647b843cd0 100644 --- a/latest/_modules/compass/landice/tests/calving_dt_convergence/dt_convergence_test.html +++ b/latest/_modules/compass/landice/tests/calving_dt_convergence/dt_convergence_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/calving_dt_convergence/run_model.html b/latest/_modules/compass/landice/tests/calving_dt_convergence/run_model.html index 9360dd0536..b7d38c579f 100644 --- a/latest/_modules/compass/landice/tests/calving_dt_convergence/run_model.html +++ b/latest/_modules/compass/landice/tests/calving_dt_convergence/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/circular_shelf.html b/latest/_modules/compass/landice/tests/circular_shelf.html index 8c5cd5ed9b..7879bfc03d 100644 --- a/latest/_modules/compass/landice/tests/circular_shelf.html +++ b/latest/_modules/compass/landice/tests/circular_shelf.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/circular_shelf/decomposition_test.html b/latest/_modules/compass/landice/tests/circular_shelf/decomposition_test.html index ae61274817..b1b856b5db 100644 --- a/latest/_modules/compass/landice/tests/circular_shelf/decomposition_test.html +++ b/latest/_modules/compass/landice/tests/circular_shelf/decomposition_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/circular_shelf/run_model.html b/latest/_modules/compass/landice/tests/circular_shelf/run_model.html index 55d2305680..55eecb3ffd 100644 --- a/latest/_modules/compass/landice/tests/circular_shelf/run_model.html +++ b/latest/_modules/compass/landice/tests/circular_shelf/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/circular_shelf/setup_mesh.html b/latest/_modules/compass/landice/tests/circular_shelf/setup_mesh.html index 96782fd8c5..03643a0bc9 100644 --- a/latest/_modules/compass/landice/tests/circular_shelf/setup_mesh.html +++ b/latest/_modules/compass/landice/tests/circular_shelf/setup_mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/circular_shelf/visualize.html b/latest/_modules/compass/landice/tests/circular_shelf/visualize.html index 31a5381940..2185d38e15 100644 --- a/latest/_modules/compass/landice/tests/circular_shelf/visualize.html +++ b/latest/_modules/compass/landice/tests/circular_shelf/visualize.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/crane.html b/latest/_modules/compass/landice/tests/crane.html index 1cee2eaccc..fc4041d660 100644 --- a/latest/_modules/compass/landice/tests/crane.html +++ b/latest/_modules/compass/landice/tests/crane.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/crane/mesh.html b/latest/_modules/compass/landice/tests/crane/mesh.html index 0a8cd4aba8..ba3b4e892b 100644 --- a/latest/_modules/compass/landice/tests/crane/mesh.html +++ b/latest/_modules/compass/landice/tests/crane/mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/crane/mesh_gen.html b/latest/_modules/compass/landice/tests/crane/mesh_gen.html index 8dcd3654ee..5e9cfb31af 100644 --- a/latest/_modules/compass/landice/tests/crane/mesh_gen.html +++ b/latest/_modules/compass/landice/tests/crane/mesh_gen.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/dome.html b/latest/_modules/compass/landice/tests/dome.html index e2fc4c39d7..f1f6cebd9c 100644 --- a/latest/_modules/compass/landice/tests/dome.html +++ b/latest/_modules/compass/landice/tests/dome.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/dome/decomposition_test.html b/latest/_modules/compass/landice/tests/dome/decomposition_test.html index 8047a0814c..4a7d58701f 100644 --- a/latest/_modules/compass/landice/tests/dome/decomposition_test.html +++ b/latest/_modules/compass/landice/tests/dome/decomposition_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/dome/restart_test.html b/latest/_modules/compass/landice/tests/dome/restart_test.html index 53a500dec2..4850d75444 100644 --- a/latest/_modules/compass/landice/tests/dome/restart_test.html +++ b/latest/_modules/compass/landice/tests/dome/restart_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/dome/run_model.html b/latest/_modules/compass/landice/tests/dome/run_model.html index 04d1cb44af..643a1a1bf1 100644 --- a/latest/_modules/compass/landice/tests/dome/run_model.html +++ b/latest/_modules/compass/landice/tests/dome/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/dome/setup_mesh.html b/latest/_modules/compass/landice/tests/dome/setup_mesh.html index 2809cc0f73..72479698e7 100644 --- a/latest/_modules/compass/landice/tests/dome/setup_mesh.html +++ b/latest/_modules/compass/landice/tests/dome/setup_mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/dome/smoke_test.html b/latest/_modules/compass/landice/tests/dome/smoke_test.html index eff8ca4109..06fc7ca64b 100644 --- a/latest/_modules/compass/landice/tests/dome/smoke_test.html +++ b/latest/_modules/compass/landice/tests/dome/smoke_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/dome/visualize.html b/latest/_modules/compass/landice/tests/dome/visualize.html index 59acd76025..b9e16b2136 100644 --- a/latest/_modules/compass/landice/tests/dome/visualize.html +++ b/latest/_modules/compass/landice/tests/dome/visualize.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/eismint2.html b/latest/_modules/compass/landice/tests/eismint2.html index 9a8b3afa1e..319be3e0d4 100644 --- a/latest/_modules/compass/landice/tests/eismint2.html +++ b/latest/_modules/compass/landice/tests/eismint2.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/eismint2/decomposition_test.html b/latest/_modules/compass/landice/tests/eismint2/decomposition_test.html index 00423835c9..2acfd430e0 100644 --- a/latest/_modules/compass/landice/tests/eismint2/decomposition_test.html +++ b/latest/_modules/compass/landice/tests/eismint2/decomposition_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/eismint2/restart_test.html b/latest/_modules/compass/landice/tests/eismint2/restart_test.html index 44e7f66184..0a36ce5ddd 100644 --- a/latest/_modules/compass/landice/tests/eismint2/restart_test.html +++ b/latest/_modules/compass/landice/tests/eismint2/restart_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/eismint2/run_experiment.html b/latest/_modules/compass/landice/tests/eismint2/run_experiment.html index c3af09765e..3a3b6e26d6 100644 --- a/latest/_modules/compass/landice/tests/eismint2/run_experiment.html +++ b/latest/_modules/compass/landice/tests/eismint2/run_experiment.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/eismint2/setup_mesh.html b/latest/_modules/compass/landice/tests/eismint2/setup_mesh.html index 9dcc27d1d1..962e02db83 100644 --- a/latest/_modules/compass/landice/tests/eismint2/setup_mesh.html +++ b/latest/_modules/compass/landice/tests/eismint2/setup_mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/eismint2/standard_experiments.html b/latest/_modules/compass/landice/tests/eismint2/standard_experiments.html index 9494ad4d89..f2dcb55034 100644 --- a/latest/_modules/compass/landice/tests/eismint2/standard_experiments.html +++ b/latest/_modules/compass/landice/tests/eismint2/standard_experiments.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/eismint2/standard_experiments/visualize.html b/latest/_modules/compass/landice/tests/eismint2/standard_experiments/visualize.html index d92c2b3e9d..51a9c14c89 100644 --- a/latest/_modules/compass/landice/tests/eismint2/standard_experiments/visualize.html +++ b/latest/_modules/compass/landice/tests/eismint2/standard_experiments/visualize.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ensemble_generator.html b/latest/_modules/compass/landice/tests/ensemble_generator.html index 1bf737b145..bb9013d370 100644 --- a/latest/_modules/compass/landice/tests/ensemble_generator.html +++ b/latest/_modules/compass/landice/tests/ensemble_generator.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ensemble_generator/branch_ensemble.html b/latest/_modules/compass/landice/tests/ensemble_generator/branch_ensemble.html index 243ff98740..42624c7074 100644 --- a/latest/_modules/compass/landice/tests/ensemble_generator/branch_ensemble.html +++ b/latest/_modules/compass/landice/tests/ensemble_generator/branch_ensemble.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_manager.html b/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_manager.html index 0cd6381c62..dd54244936 100644 --- a/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_manager.html +++ b/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_manager.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_member.html b/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_member.html index b014080ee3..eda0318c9b 100644 --- a/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_member.html +++ b/latest/_modules/compass/landice/tests/ensemble_generator/ensemble_member.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ensemble_generator/spinup_ensemble.html b/latest/_modules/compass/landice/tests/ensemble_generator/spinup_ensemble.html index 8043145bd2..7a1416a196 100644 --- a/latest/_modules/compass/landice/tests/ensemble_generator/spinup_ensemble.html +++ b/latest/_modules/compass/landice/tests/ensemble_generator/spinup_ensemble.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/enthalpy_benchmark.html b/latest/_modules/compass/landice/tests/enthalpy_benchmark.html index 2c7ab7d32e..97182551c4 100644 --- a/latest/_modules/compass/landice/tests/enthalpy_benchmark.html +++ b/latest/_modules/compass/landice/tests/enthalpy_benchmark.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/enthalpy_benchmark/A.html b/latest/_modules/compass/landice/tests/enthalpy_benchmark/A.html index 9cd3fb9943..0c9da04ace 100644 --- a/latest/_modules/compass/landice/tests/enthalpy_benchmark/A.html +++ b/latest/_modules/compass/landice/tests/enthalpy_benchmark/A.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/enthalpy_benchmark/A/visualize.html b/latest/_modules/compass/landice/tests/enthalpy_benchmark/A/visualize.html index 8196df95e8..90a8eb9db7 100644 --- a/latest/_modules/compass/landice/tests/enthalpy_benchmark/A/visualize.html +++ b/latest/_modules/compass/landice/tests/enthalpy_benchmark/A/visualize.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/enthalpy_benchmark/B.html b/latest/_modules/compass/landice/tests/enthalpy_benchmark/B.html index 50d713c93e..1a1e6cf7d8 100644 --- a/latest/_modules/compass/landice/tests/enthalpy_benchmark/B.html +++ b/latest/_modules/compass/landice/tests/enthalpy_benchmark/B.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/enthalpy_benchmark/B/visualize.html b/latest/_modules/compass/landice/tests/enthalpy_benchmark/B/visualize.html index 515aefc464..ca98387db3 100644 --- a/latest/_modules/compass/landice/tests/enthalpy_benchmark/B/visualize.html +++ b/latest/_modules/compass/landice/tests/enthalpy_benchmark/B/visualize.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/enthalpy_benchmark/run_model.html b/latest/_modules/compass/landice/tests/enthalpy_benchmark/run_model.html index b34ecdf63a..6d073f9182 100644 --- a/latest/_modules/compass/landice/tests/enthalpy_benchmark/run_model.html +++ b/latest/_modules/compass/landice/tests/enthalpy_benchmark/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/enthalpy_benchmark/setup_mesh.html b/latest/_modules/compass/landice/tests/enthalpy_benchmark/setup_mesh.html index cb55eed162..cec84ae47b 100644 --- a/latest/_modules/compass/landice/tests/enthalpy_benchmark/setup_mesh.html +++ b/latest/_modules/compass/landice/tests/enthalpy_benchmark/setup_mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/greenland.html b/latest/_modules/compass/landice/tests/greenland.html index dbe9bada22..213bb2a561 100644 --- a/latest/_modules/compass/landice/tests/greenland.html +++ b/latest/_modules/compass/landice/tests/greenland.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/greenland/decomposition_test.html b/latest/_modules/compass/landice/tests/greenland/decomposition_test.html index ecc447ac29..9c0b317510 100644 --- a/latest/_modules/compass/landice/tests/greenland/decomposition_test.html +++ b/latest/_modules/compass/landice/tests/greenland/decomposition_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/greenland/mesh.html b/latest/_modules/compass/landice/tests/greenland/mesh.html index 124366b9cf..27d4e67fa4 100644 --- a/latest/_modules/compass/landice/tests/greenland/mesh.html +++ b/latest/_modules/compass/landice/tests/greenland/mesh.html @@ -13,7 +13,7 @@ - + @@ -112,7 +112,15 @@

Source code for compass.landice.tests.greenland.mesh

-from compass.landice.mesh import (
+from os.path import exists
+from shutil import copyfile
+
+import netCDF4
+import numpy as np
+from mpas_tools.logging import check_call
+from mpas_tools.scrip.from_mpas import scrip_from_mpas
+
+from compass.landice.mesh import (
     build_cell_width,
     build_mali_mesh,
     make_region_masks,
@@ -171,6 +179,10 @@ 
Source code for compass.landice.tests.greenland.mesh
logger = self.logger
         mesh_name = 'GIS.nc'
         section_name = 'mesh'
+        config = self.config
+        section = config[section_name]
+        data_path = section.get('data_path')
+        nProcs = section.get('nProcs')
 
         logger.info('calling build_cell_width')
         cell_width, x1, y1, geom_points, geom_edges, floodMask = \
@@ -185,9 +197,112 @@ 
Source code for compass.landice.tests.greenland.mesh
gridded_dataset='greenland_1km_2024_01_29.epsg3413.icesheetonly.nc',  # noqa
             projection='gis-gimp', geojson_file=None)
 
+        # Create scrip files if they don't already exist
+        if exists(data_path + '/BedMachineGreenland-v5.scrip.nc'):
+            logger.info('BedMachine script file exists;'
+                        ' skipping file creation')
+        else:
+            logger.info('creating scrip file for BedMachine dataset')
+            args = ['create_SCRIP_file_from_planar_rectangular_grid.py',
+                    '-i', data_path + '/BedMachineGreenland-v5_edits_floodFill_extrap.nc',  # noqa
+                    '-s', data_path + '/BedMachineGreenland-v5.scrip.nc',
+                    '-p', 'gis-gimp', '-r', '2']
+            check_call(args, logger=logger)
+        if exists(data_path + '/greenland_vel_mosaic500.scrip.nc'):
+            logger.info('Measures script file exists; skipping file creation')
+        else:
+            logger.info('creating scrip file for 2006-2010 velocity dataset')
+            args = ['create_SCRIP_file_from_planar_rectangular_grid.py',
+                    '-i', data_path + '/greenland_vel_mosaic500_extrap.nc',
+                    '-s', data_path + '/greenland_vel_mosaic500.scrip.nc',
+                    '-p', 'gis-gimp', '-r', '2']
+            check_call(args, logger=logger)
+
+        logger.info('calling set_lat_lon_fields_in_planar_grid.py')
+        args = ['set_lat_lon_fields_in_planar_grid.py', '-f',
+                'GIS.nc', '-p', 'gis-gimp']
+        check_call(args, logger=logger)
+
+        logger.info('creating scrip file for destination mesh')
+        scrip_from_mpas('GIS.nc', 'GIS.scrip.nc')
+        args = ['create_SCRIP_file_from_MPAS_mesh.py',
+                '-m', 'GIS.nc',
+                '-s', 'GIS.scrip.nc']
+        check_call(args, logger=logger)
+
+        # Create weight files from datasets to mesh
+        if exists('BedMachine_to_MPAS_weights.nc'):
+            logger.info('BedMachine_to_MPAS_weights.nc exists; skipping')
+        else:
+            logger.info('generating gridded dataset -> MPAS weights')
+            args = ['srun', '-n', nProcs, 'ESMF_RegridWeightGen', '--source',
+                    data_path + 'BedMachineGreenland-v5.scrip.nc',
+                    '--destination',
+                    'GIS.scrip.nc',
+                    '--weight', 'BedMachine_to_MPAS_weights.nc',
+                    '--method', 'conserve',
+                    "-i", "-64bit_offset",
+                    "--dst_regional", "--src_regional", '--netcdf4']
+            check_call(args, logger=logger)
+
+        if exists('measures_to_MPAS_weights.nc'):
+            logger.info('measures_to_MPAS_weights.nc exists; skipping')
+        else:
+            logger.info('generating gridded dataset -> MPAS weights')
+            args = ['srun', '-n', nProcs, 'ESMF_RegridWeightGen', '--source',
+                    data_path + 'greenland_vel_mosaic500.scrip.nc',
+                    '--destination',
+                    'GIS.scrip.nc',
+                    '--weight', 'measures_to_MPAS_weights.nc',
+                    '--method', 'conserve',
+                    "-i", "-64bit_offset", '--netcdf4',
+                    "--dst_regional", "--src_regional", '--ignore_unmapped']
+            check_call(args, logger=logger)
+
+        # interpolate fields from BedMachine and Measures
+        # Using conservative remapping
+        logger.info('calling interpolate_to_mpasli_grid.py')
+        args = ['interpolate_to_mpasli_grid.py', '-s',
+                data_path + '/BedMachineGreenland-v5_edits_floodFill_extrap.nc',  # noqa
+                '-d', 'GIS.nc', '-m', 'e',
+                '-w', 'BedMachine_to_MPAS_weights.nc']
+        check_call(args, logger=logger)
+
+        logger.info('calling interpolate_to_mpasli_grid.py')
+        args = ['interpolate_to_mpasli_grid.py', '-s',
+                data_path + '/greenland_vel_mosaic500_extrap.nc',
+                '-d', 'GIS.nc', '-m', 'e',
+                '-w', 'measures_to_MPAS_weights.nc',
+                '-v', 'observedSurfaceVelocityX',
+                'observedSurfaceVelocityY',
+                'observedSurfaceVelocityUncertainty']
+        check_call(args, logger=logger)
+
+        logger.info('Marking domain boundaries dirichlet')
+        args = ['mark_domain_boundaries_dirichlet.py',
+                '-f', 'GIS.nc']
+        check_call(args, logger=logger)
+
         logger.info('creating graph.info')
         make_graph_file(mesh_filename=mesh_name,
                         graph_filename='graph.info')
+        # Create a backup in case clean-up goes awry
+        copyfile('GIS.nc', 'GIS_backup.nc')
+
+        # Clean up: trim to iceMask and set large velocity
+        # uncertainties where appropriate.
+        data = netCDF4.Dataset('GIS.nc', 'r+')
+        data.set_auto_mask(False)
+        data.variables['thickness'][:] *= (data.variables['iceMask'][:] > 1.5)
+
+        mask = np.logical_or(
+            np.isnan(
+                data.variables['observedSurfaceVelocityUncertainty'][:]),
+            data.variables['thickness'][:] < 1.0)
+        mask = np.logical_or(
+            mask,
+            data.variables['observedSurfaceVelocityUncertainty'][:] == 0.0)
+        data.variables['observedSurfaceVelocityUncertainty'][0, mask[0, :]] = 1.0  # noqa
 
         # create region masks
         mask_filename = f'{mesh_name[:-3]}_regionMasks.nc'
@@ -200,7 +315,23 @@ 
Source code for compass.landice.tests.greenland.mesh
'southEastGreenland',
                                 'southGreenland',
                                 'southWestGreenland',
-                                'westCentralGreenland'])

+                                'westCentralGreenland'])
+
+        # Ensure basalHeatFlux is positive
+        data.variables['basalHeatFlux'][:] = np.abs(
+            data.variables['basalHeatFlux'][:])
+        # Ensure reasonable dHdt values
+        dHdt = data.variables["observedThicknessTendency"][:]
+        dHdtErr = data.variables["observedThicknessTendencyUncertainty"][:]
+        # Arbitrary 5% uncertainty; improve this later
+        dHdtErr = np.abs(dHdt) * 0.05
+        # large uncertainty where data is missing
+        dHdtErr[np.abs(dHdt) > 1.0] = 1.0
+        dHdt[np.abs(dHdt) > 1.0] = 0.0  # Remove ridiculous values
+        data.variables["observedThicknessTendency"][:] = dHdt
+        data.variables["observedThicknessTendencyUncertainty"][:] = dHdtErr
+
+        data.close()
diff --git a/latest/_modules/compass/landice/tests/greenland/mesh_gen.html b/latest/_modules/compass/landice/tests/greenland/mesh_gen.html index e7832da77f..902e238aca 100644 --- a/latest/_modules/compass/landice/tests/greenland/mesh_gen.html +++ b/latest/_modules/compass/landice/tests/greenland/mesh_gen.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/greenland/restart_test.html b/latest/_modules/compass/landice/tests/greenland/restart_test.html index d9e80d7da0..4312f06ce9 100644 --- a/latest/_modules/compass/landice/tests/greenland/restart_test.html +++ b/latest/_modules/compass/landice/tests/greenland/restart_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/greenland/run_model.html b/latest/_modules/compass/landice/tests/greenland/run_model.html index b7a876d394..1c9cbccd56 100644 --- a/latest/_modules/compass/landice/tests/greenland/run_model.html +++ b/latest/_modules/compass/landice/tests/greenland/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/greenland/smoke_test.html b/latest/_modules/compass/landice/tests/greenland/smoke_test.html index 1f4ee5c658..4a10d93c31 100644 --- a/latest/_modules/compass/landice/tests/greenland/smoke_test.html +++ b/latest/_modules/compass/landice/tests/greenland/smoke_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/humboldt.html b/latest/_modules/compass/landice/tests/humboldt.html index 8ba851e8a4..495932fb73 100644 --- a/latest/_modules/compass/landice/tests/humboldt.html +++ b/latest/_modules/compass/landice/tests/humboldt.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/humboldt/decomposition_test.html b/latest/_modules/compass/landice/tests/humboldt/decomposition_test.html index abc65daeb3..a510bc0118 100644 --- a/latest/_modules/compass/landice/tests/humboldt/decomposition_test.html +++ b/latest/_modules/compass/landice/tests/humboldt/decomposition_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/humboldt/mesh.html b/latest/_modules/compass/landice/tests/humboldt/mesh.html index 50aafd660b..1d599379c2 100644 --- a/latest/_modules/compass/landice/tests/humboldt/mesh.html +++ b/latest/_modules/compass/landice/tests/humboldt/mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/humboldt/mesh_gen.html b/latest/_modules/compass/landice/tests/humboldt/mesh_gen.html index 75e6935bdd..24f3c0322d 100644 --- a/latest/_modules/compass/landice/tests/humboldt/mesh_gen.html +++ b/latest/_modules/compass/landice/tests/humboldt/mesh_gen.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/humboldt/restart_test.html b/latest/_modules/compass/landice/tests/humboldt/restart_test.html index 7ef19e8e6a..228e615d75 100644 --- a/latest/_modules/compass/landice/tests/humboldt/restart_test.html +++ b/latest/_modules/compass/landice/tests/humboldt/restart_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/humboldt/run_model.html b/latest/_modules/compass/landice/tests/humboldt/run_model.html index f61ef23473..8941ef6eaf 100644 --- a/latest/_modules/compass/landice/tests/humboldt/run_model.html +++ b/latest/_modules/compass/landice/tests/humboldt/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial.html b/latest/_modules/compass/landice/tests/hydro_radial.html index 2bbbd60125..c251055e66 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial.html +++ b/latest/_modules/compass/landice/tests/hydro_radial.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial/decomposition_test.html b/latest/_modules/compass/landice/tests/hydro_radial/decomposition_test.html index 8d0c219eaa..59986b4485 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial/decomposition_test.html +++ b/latest/_modules/compass/landice/tests/hydro_radial/decomposition_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial/restart_test.html b/latest/_modules/compass/landice/tests/hydro_radial/restart_test.html index ab8b719fa9..7f2ed33976 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial/restart_test.html +++ b/latest/_modules/compass/landice/tests/hydro_radial/restart_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial/run_model.html b/latest/_modules/compass/landice/tests/hydro_radial/run_model.html index 9e83c4ee70..aa1d3198f1 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial/run_model.html +++ b/latest/_modules/compass/landice/tests/hydro_radial/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial/setup_mesh.html b/latest/_modules/compass/landice/tests/hydro_radial/setup_mesh.html index df552c2466..ea18143a82 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial/setup_mesh.html +++ b/latest/_modules/compass/landice/tests/hydro_radial/setup_mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial/spinup_test.html b/latest/_modules/compass/landice/tests/hydro_radial/spinup_test.html index 82e366836c..93e7d70e99 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial/spinup_test.html +++ b/latest/_modules/compass/landice/tests/hydro_radial/spinup_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial/steady_state_drift_test.html b/latest/_modules/compass/landice/tests/hydro_radial/steady_state_drift_test.html index 08310858b4..07d73a706b 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial/steady_state_drift_test.html +++ b/latest/_modules/compass/landice/tests/hydro_radial/steady_state_drift_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/hydro_radial/visualize.html b/latest/_modules/compass/landice/tests/hydro_radial/visualize.html index bda00107dd..e8b68a38b2 100644 --- a/latest/_modules/compass/landice/tests/hydro_radial/visualize.html +++ b/latest/_modules/compass/landice/tests/hydro_radial/visualize.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing.html b/latest/_modules/compass/landice/tests/ismip6_forcing.html index af58595127..198903b55b 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere.html b/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere.html index 9d52790a47..3040adf9cc 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb.html b/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb.html index 6be13db17c..f365e7a9c7 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb_racmo.html b/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb_racmo.html index 13121f143b..51649932f5 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb_racmo.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/atmosphere/process_smb_racmo.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/configure.html b/latest/_modules/compass/landice/tests/ismip6_forcing/configure.html index b8cf2ca8a9..98028dd760 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/configure.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/configure.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/create_mapfile.html b/latest/_modules/compass/landice/tests/ismip6_forcing/create_mapfile.html index 6173744ed7..ea05610f23 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/create_mapfile.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/create_mapfile.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal.html b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal.html index 151541e701..7c3b924c2d 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal/process_basal_melt.html b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal/process_basal_melt.html index 710b593633..af34dd509e 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal/process_basal_melt.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_basal/process_basal_melt.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal.html b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal.html index bd751a7338..5850e196e5 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal/process_thermal_forcing.html b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal/process_thermal_forcing.html index 044d68d131..4126071a35 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal/process_thermal_forcing.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/ocean_thermal/process_thermal_forcing.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse.html b/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse.html index 7963777fa1..ad05debc39 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse/process_shelf_collapse.html b/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse/process_shelf_collapse.html index 2481f30f08..3d7689865f 100644 --- a/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse/process_shelf_collapse.html +++ b/latest/_modules/compass/landice/tests/ismip6_forcing/shelf_collapse/process_shelf_collapse.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_run.html b/latest/_modules/compass/landice/tests/ismip6_run.html index 9aa4585463..4c94d9521c 100644 --- a/latest/_modules/compass/landice/tests/ismip6_run.html +++ b/latest/_modules/compass/landice/tests/ismip6_run.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300.html b/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300.html index 4c31aea2fc..c21d20cd7e 100644 --- a/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300.html +++ b/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300/set_up_experiment.html b/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300/set_up_experiment.html index 8b50bdfa8e..58f86e0fa4 100644 --- a/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300/set_up_experiment.html +++ b/latest/_modules/compass/landice/tests/ismip6_run/ismip6_ais_proj2300/set_up_experiment.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/isunnguata_sermia.html b/latest/_modules/compass/landice/tests/isunnguata_sermia.html index b5621b2217..a9cfb9ba3c 100644 --- a/latest/_modules/compass/landice/tests/isunnguata_sermia.html +++ b/latest/_modules/compass/landice/tests/isunnguata_sermia.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh.html b/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh.html index 9e83162b0e..91ef66b9d0 100644 --- a/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh.html +++ b/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh_gen.html b/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh_gen.html index 516adcb612..bbd4596471 100644 --- a/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh_gen.html +++ b/latest/_modules/compass/landice/tests/isunnguata_sermia/mesh_gen.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/kangerlussuaq.html b/latest/_modules/compass/landice/tests/kangerlussuaq.html index 0a35c1dbbf..a6e354a58f 100644 --- a/latest/_modules/compass/landice/tests/kangerlussuaq.html +++ b/latest/_modules/compass/landice/tests/kangerlussuaq.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/kangerlussuaq/mesh.html b/latest/_modules/compass/landice/tests/kangerlussuaq/mesh.html index bd2000e46d..c962bfcdd7 100644 --- a/latest/_modules/compass/landice/tests/kangerlussuaq/mesh.html +++ b/latest/_modules/compass/landice/tests/kangerlussuaq/mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/kangerlussuaq/mesh_gen.html b/latest/_modules/compass/landice/tests/kangerlussuaq/mesh_gen.html index 4bab915f3d..66c668ab7b 100644 --- a/latest/_modules/compass/landice/tests/kangerlussuaq/mesh_gen.html +++ b/latest/_modules/compass/landice/tests/kangerlussuaq/mesh_gen.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/koge_bugt_s.html b/latest/_modules/compass/landice/tests/koge_bugt_s.html index 8a9a4c44e6..1e0d331c2a 100644 --- a/latest/_modules/compass/landice/tests/koge_bugt_s.html +++ b/latest/_modules/compass/landice/tests/koge_bugt_s.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/koge_bugt_s/mesh.html b/latest/_modules/compass/landice/tests/koge_bugt_s/mesh.html index 1d9fa8081a..d62edb99e4 100644 --- a/latest/_modules/compass/landice/tests/koge_bugt_s/mesh.html +++ b/latest/_modules/compass/landice/tests/koge_bugt_s/mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/koge_bugt_s/mesh_gen.html b/latest/_modules/compass/landice/tests/koge_bugt_s/mesh_gen.html index 0d397020e7..77998f0df2 100644 --- a/latest/_modules/compass/landice/tests/koge_bugt_s/mesh_gen.html +++ b/latest/_modules/compass/landice/tests/koge_bugt_s/mesh_gen.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mesh_modifications.html b/latest/_modules/compass/landice/tests/mesh_modifications.html index 2b850a9bf8..18dbcc8595 100644 --- a/latest/_modules/compass/landice/tests/mesh_modifications.html +++ b/latest/_modules/compass/landice/tests/mesh_modifications.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor.html b/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor.html index 60ec8f8240..f86734edb2 100644 --- a/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor.html +++ b/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor/extract_region.html b/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor/extract_region.html index 02b1ee2674..9721c94f2d 100644 --- a/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor/extract_region.html +++ b/latest/_modules/compass/landice/tests/mesh_modifications/subdomain_extractor/extract_region.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mismipplus.html b/latest/_modules/compass/landice/tests/mismipplus.html index 22c038d320..ec271e6029 100644 --- a/latest/_modules/compass/landice/tests/mismipplus.html +++ b/latest/_modules/compass/landice/tests/mismipplus.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mismipplus/run_model.html b/latest/_modules/compass/landice/tests/mismipplus/run_model.html index 3f8da5641c..51835c79b8 100644 --- a/latest/_modules/compass/landice/tests/mismipplus/run_model.html +++ b/latest/_modules/compass/landice/tests/mismipplus/run_model.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mismipplus/setup_mesh.html b/latest/_modules/compass/landice/tests/mismipplus/setup_mesh.html index e3848e78a0..de3fa0a8ee 100644 --- a/latest/_modules/compass/landice/tests/mismipplus/setup_mesh.html +++ b/latest/_modules/compass/landice/tests/mismipplus/setup_mesh.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mismipplus/smoke_test.html b/latest/_modules/compass/landice/tests/mismipplus/smoke_test.html index 9e8fefc8f1..b7f95e887f 100644 --- a/latest/_modules/compass/landice/tests/mismipplus/smoke_test.html +++ b/latest/_modules/compass/landice/tests/mismipplus/smoke_test.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/landice/tests/mismipplus/spin_up.html b/latest/_modules/compass/landice/tests/mismipplus/spin_up.html index 9e548cb691..a75ac08857 100644 --- a/latest/_modules/compass/landice/tests/mismipplus/spin_up.html +++ b/latest/_modules/compass/landice/tests/mismipplus/spin_up.html @@ -13,7 +13,7 @@ - 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+ diff --git a/latest/_modules/compass/run/serial.html b/latest/_modules/compass/run/serial.html index 7b0b134354..0a352ba8c9 100644 --- a/latest/_modules/compass/run/serial.html +++ b/latest/_modules/compass/run/serial.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/setup.html b/latest/_modules/compass/setup.html index d30b2409f0..cb32019470 100644 --- a/latest/_modules/compass/setup.html +++ b/latest/_modules/compass/setup.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/step.html b/latest/_modules/compass/step.html index 787237e06d..ea24912a4b 100644 --- a/latest/_modules/compass/step.html +++ b/latest/_modules/compass/step.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/suite.html b/latest/_modules/compass/suite.html index 05796ffc43..71412cd635 100644 --- a/latest/_modules/compass/suite.html +++ b/latest/_modules/compass/suite.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/testcase.html b/latest/_modules/compass/testcase.html index be9b8e1900..d6d3fe1bec 100644 --- a/latest/_modules/compass/testcase.html +++ b/latest/_modules/compass/testcase.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/testgroup.html b/latest/_modules/compass/testgroup.html index 8c34e3239d..f9eb2ffd96 100644 --- a/latest/_modules/compass/testgroup.html +++ b/latest/_modules/compass/testgroup.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/compass/validate.html b/latest/_modules/compass/validate.html index 17dc49e5e9..7fe3b6e6c5 100644 --- a/latest/_modules/compass/validate.html +++ b/latest/_modules/compass/validate.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_modules/index.html b/latest/_modules/index.html index 9dc3c07321..63c16d7b39 100644 --- a/latest/_modules/index.html +++ b/latest/_modules/index.html @@ -13,7 +13,7 @@ - + diff --git a/latest/_sources/developers_guide/landice/test_groups/greenland.rst.txt b/latest/_sources/developers_guide/landice/test_groups/greenland.rst.txt index 5b27d62983..cdc7e1a3d2 100644 --- a/latest/_sources/developers_guide/landice/test_groups/greenland.rst.txt +++ b/latest/_sources/developers_guide/landice/test_groups/greenland.rst.txt @@ -89,3 +89,15 @@ mesh_gen The :py:class:`compass.landice.tests.greenland.mesh_gen.MeshGen` calls the :py:class:`compass.landice.tests.greenland.mesh.Mesh` to create the variable resolution Greenland Ice Sheet mesh. + +The mesh generation is based around 1- and 2-km reference datasets, which +are updated in a number of ways directly from high resolution source +data. In the future, a complete workflow from source datasets may +replace this hybrid method. + +Once the mesh is created, scrip files and the associated weights files +are created for the mesh and observational data sets. Then, ice geometry and +velocity observations are conservatively remapped from BedMachine v5 and +MEaSUREs 2006-2010 data sets. Finally, there is some cleanup to set large +velocity uncertainties outside the ice mask, check the sign of the basal heat +flux, and set reasonable values for dH/dt and its uncertainty. diff --git a/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt b/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt index c523e6a6cc..f0a0629e80 100644 --- a/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt +++ b/latest/_sources/users_guide/landice/test_groups/antarctica.rst.txt @@ -96,8 +96,8 @@ attributes, extrapolating fields to avoid interpolation ramps at ice margins, updating mask values, and raising the bed topography at Lake Vostok to ensure a flat ice surface there. -Those data files and processing scripts currently live here on Chicoma: -``/usr/projects/climate/trhille/data``. +Those data files and processing scripts currently live here on Perlmutter: +``/global/cfs/cdirs/fanssie/standard_datasets/AIS_datasets``. Eventually that pre-processing could be integrated into a new step in COMPASS, or the processed data files could be added to the server on Anvil and downloaded as needed. However, until then, this test case provides a reproducible workflow diff --git a/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt b/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt index 67188d158c..902baa0161 100644 --- a/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt +++ b/latest/_sources/users_guide/landice/test_groups/greenland.rst.txt @@ -3,8 +3,9 @@ greenland ========= -The ``landice/greenland`` test group runs tests with a coarse (20-km) +The ``landice/greenland`` test group is used to run tests with a coarse (20-km) `Greenland mesh `_. +and to create customized variable resolution meshes. .. figure:: images/gis_speed.png :width: 742 px @@ -32,34 +33,58 @@ The other test cases do not use config options. .. code-block:: cfg - [mesh] - - # number of levels in the mesh - levels = 10 - - # distance from ice margin to cull (km). - # Set to a value <= 0 if you do not want - # to cull based on distance from margin. - cull_distance = 10.0 - - # mesh density parameters - # minimum cell spacing (meters) - min_spac = 3.e3 - # maximum cell spacing (meters) - max_spac = 30.e3 - # log10 of max speed for cell spacing - high_log_speed = 2.5 - # log10 of min speed for cell spacing - low_log_speed = 0.75 - # distance at which cell spacing = max_spac - high_dist = 1.e5 - # distance within which cell spacing = min_spac - low_dist = 5.e4 - - # mesh density functions - use_speed = True - use_dist_to_grounding_line = False - use_dist_to_edge = True + # config options for high_res_mesh test case + [mesh] + + # path to directory containing BedMachine and Measures datasets + data_path = /global/cfs/cdirs/fanssie/standard_datasets/GIS_datasets/ + + # number of levels in the mesh + levels = 10 + + # Bounds of GIS mesh. If any bound is set + # to None, the mesh will use the full extent + # of the gridded dataset. + x_min = None + x_max = None + y_min = None + y_max = None + + # distance from ice margin to cull (km). + # Set to a value <= 0 if you do not want + # to cull based on distance from margin. + cull_distance = 10.0 + + # number of processors to use for ESMF_RegridWeightGen + nProcs = 128 + + # mesh density parameters + # minimum cell spacing (meters) + min_spac = 3.e3 + # maximum cell spacing (meters) + max_spac = 30.e3 + # log10 of max speed for cell spacing + high_log_speed = 2.5 + # log10 of min speed for cell spacing + low_log_speed = 0.75 + # distance at which cell spacing = max_spac + high_dist = 1.e5 + # distance within which cell spacing = min_spac + low_dist = 1.e4 + # distance at which bed topography has no effect + high_dist_bed = 1.e5 + # distance within which bed topography has maximum effect + low_dist_bed = 7.5e4 + # Bed elev beneath which cell spacing is minimized + low_bed = 50.0 + # Bed elev above which cell spacing is maximized + high_bed = 100.0 + + # mesh density functions + use_speed = True + use_dist_to_grounding_line = False + use_dist_to_edge = True + use_bed = True smoke_test ---------- @@ -93,3 +118,21 @@ on the the config options listed above. This will not be the same as the pre-generated 20 km mesh used in the other three test cases because it uses a newer version of Jigsaw. Note that the basal friction optimization is performed separately and is not part of this test case. + +The test case performs interpolation of observational data from gridded +datasets to the Greenland mesh. This takes care of the peculiarities of +the current gridded compilation dataset (greenland_1km_2024_01_29.epsg3413.icesheetonly.nc), +as well as using conservative remapping directly from the high-resolution +BedMachine v5 and MeASUReS 2006-2010 velocity datasets. There is a fairly +heavy degree of pre-processing done to get the BedMachine and MeASUReS +datasets ready to be used here. The pre-processing includes renaming +variables, setting reasonable _FillValue and missing_value attributes +extrapolating fields to avoid interpolation ramps at ice margins, +updating mask values. + +Those data files and processing scripts currently live here on Perlmutter: +``/global/cfs/cdirs/fanssie/standard_datasets/GIS_datasets/``. Eventually +that pre-processing could be integrated into a new step in COMPASS, or +the processed data files could be added to the server on Anvil and downloaded +as needed. However, until then, this test case provides a reproducible workflow +for setting up Greenland meshes at varying resolutions. diff --git a/latest/_static/basic.css b/latest/_static/basic.css index 30fee9d0f7..f316efcb47 100644 --- a/latest/_static/basic.css +++ b/latest/_static/basic.css @@ -4,7 +4,7 @@ * * Sphinx stylesheet -- basic theme. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/latest/_static/doctools.js b/latest/_static/doctools.js index d06a71d751..4d67807d17 100644 --- a/latest/_static/doctools.js +++ b/latest/_static/doctools.js @@ -4,7 +4,7 @@ * * Base JavaScript utilities for all Sphinx HTML documentation. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ diff --git a/latest/_static/language_data.js b/latest/_static/language_data.js index 250f5665fa..367b8ed81b 100644 --- a/latest/_static/language_data.js +++ b/latest/_static/language_data.js @@ -5,7 +5,7 @@ * This script contains the language-specific data used by searchtools.js, * namely the list of stopwords, stemmer, scorer and splitter. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -13,7 +13,7 @@ var stopwords = ["a", "and", "are", "as", "at", "be", "but", "by", "for", "if", "in", "into", "is", "it", "near", "no", "not", "of", "on", "or", "such", "that", "the", "their", "then", "there", "these", "they", "this", "to", "was", "will", "with"]; -/* Non-minified version is copied as a separate JS file, is available */ +/* Non-minified version is copied as a separate JS file, if available */ /** * Porter Stemmer diff --git a/latest/_static/searchtools.js b/latest/_static/searchtools.js index 7918c3fab3..92da3f8b22 100644 --- a/latest/_static/searchtools.js +++ b/latest/_static/searchtools.js @@ -4,7 +4,7 @@ * * Sphinx JavaScript utilities for the full-text search. * - * :copyright: Copyright 2007-2023 by the Sphinx team, see AUTHORS. + * :copyright: Copyright 2007-2024 by the Sphinx team, see AUTHORS. * :license: BSD, see LICENSE for details. * */ @@ -99,7 +99,7 @@ const _displayItem = (item, searchTerms, highlightTerms) => { .then((data) => { if (data) listItem.appendChild( - Search.makeSearchSummary(data, searchTerms) + Search.makeSearchSummary(data, searchTerms, anchor) ); // highlight search terms in the summary if (SPHINX_HIGHLIGHT_ENABLED) // set in sphinx_highlight.js @@ -116,8 +116,8 @@ const _finishSearch = (resultCount) => { ); else Search.status.innerText = _( - `Search finished, found ${resultCount} page(s) matching the search query.` - ); + "Search finished, found ${resultCount} page(s) matching the search query." + ).replace('${resultCount}', resultCount); }; const _displayNextItem = ( results, @@ -137,6 +137,22 @@ const _displayNextItem = ( // search finished, update title and status message else _finishSearch(resultCount); }; +// Helper function used by query() to order search results. +// Each input is an array of [docname, title, anchor, descr, score, filename]. +// Order the results by score (in opposite order of appearance, since the +// `_displayNextItem` function uses pop() to retrieve items) and then alphabetically. +const _orderResultsByScoreThenName = (a, b) => { + const leftScore = a[4]; + const rightScore = b[4]; + if (leftScore === rightScore) { + // same score: sort alphabetically + const leftTitle = a[1].toLowerCase(); + const rightTitle = b[1].toLowerCase(); + if (leftTitle === rightTitle) return 0; + return leftTitle > rightTitle ? -1 : 1; // inverted is intentional + } + return leftScore > rightScore ? 1 : -1; +}; /** * Default splitQuery function. Can be overridden in ``sphinx.search`` with a @@ -160,13 +176,26 @@ const Search = { _queued_query: null, _pulse_status: -1, - htmlToText: (htmlString) => { + htmlToText: (htmlString, anchor) => { const htmlElement = new DOMParser().parseFromString(htmlString, 'text/html'); - htmlElement.querySelectorAll(".headerlink").forEach((el) => { el.remove() }); + for (const removalQuery of [".headerlinks", "script", "style"]) { + htmlElement.querySelectorAll(removalQuery).forEach((el) => { el.remove() }); + } + if (anchor) { + const anchorContent = htmlElement.querySelector(`[role="main"] ${anchor}`); + if (anchorContent) return anchorContent.textContent; + + console.warn( + `Anchored content block not found. Sphinx search tries to obtain it via DOM query '[role=main] ${anchor}'. Check your theme or template.` + ); + } + + // if anchor not specified or not found, fall back to main content const docContent = htmlElement.querySelector('[role="main"]'); - if (docContent !== undefined) return docContent.textContent; + if (docContent) return docContent.textContent; + console.warn( - "Content block not found. Sphinx search tries to obtain it via '[role=main]'. Could you check your theme or template." + "Content block not found. Sphinx search tries to obtain it via DOM query '[role=main]'. Check your theme or template." ); return ""; }, @@ -239,16 +268,7 @@ const Search = { else Search.deferQuery(query); }, - /** - * execute search (requires search index to be loaded) - */ - query: (query) => { - const filenames = Search._index.filenames; - const docNames = Search._index.docnames; - const titles = Search._index.titles; - const allTitles = Search._index.alltitles; - const indexEntries = Search._index.indexentries; - + _parseQuery: (query) => { // stem the search terms and add them to the correct list const stemmer = new Stemmer(); const searchTerms = new Set(); @@ -284,16 +304,32 @@ const Search = { // console.info("required: ", [...searchTerms]); // console.info("excluded: ", [...excludedTerms]); - // array of [docname, title, anchor, descr, score, filename] - let results = []; + return [query, searchTerms, excludedTerms, highlightTerms, objectTerms]; + }, + + /** + * execute search (requires search index to be loaded) + */ + _performSearch: (query, searchTerms, excludedTerms, highlightTerms, objectTerms) => { + const filenames = Search._index.filenames; + const docNames = Search._index.docnames; + const titles = Search._index.titles; + const allTitles = Search._index.alltitles; + const indexEntries = Search._index.indexentries; + + // Collect multiple result groups to be sorted separately and then ordered. + // Each is an array of [docname, title, anchor, descr, score, filename]. + const normalResults = []; + const nonMainIndexResults = []; + _removeChildren(document.getElementById("search-progress")); - const queryLower = query.toLowerCase(); + const queryLower = query.toLowerCase().trim(); for (const [title, foundTitles] of Object.entries(allTitles)) { - if (title.toLowerCase().includes(queryLower) && (queryLower.length >= title.length/2)) { + if (title.toLowerCase().trim().includes(queryLower) && (queryLower.length >= title.length/2)) { for (const [file, id] of foundTitles) { let score = Math.round(100 * queryLower.length / title.length) - results.push([ + normalResults.push([ docNames[file], titles[file] !== title ? `${titles[file]} > ${title}` : title, id !== null ? "#" + id : "", @@ -308,46 +344,47 @@ const Search = { // search for explicit entries in index directives for (const [entry, foundEntries] of Object.entries(indexEntries)) { if (entry.includes(queryLower) && (queryLower.length >= entry.length/2)) { - for (const [file, id] of foundEntries) { - let score = Math.round(100 * queryLower.length / entry.length) - results.push([ + for (const [file, id, isMain] of foundEntries) { + const score = Math.round(100 * queryLower.length / entry.length); + const result = [ docNames[file], titles[file], id ? "#" + id : "", null, score, filenames[file], - ]); + ]; + if (isMain) { + normalResults.push(result); + } else { + nonMainIndexResults.push(result); + } } } } // lookup as object objectTerms.forEach((term) => - results.push(...Search.performObjectSearch(term, objectTerms)) + normalResults.push(...Search.performObjectSearch(term, objectTerms)) ); // lookup as search terms in fulltext - results.push(...Search.performTermsSearch(searchTerms, excludedTerms)); + normalResults.push(...Search.performTermsSearch(searchTerms, excludedTerms)); // let the scorer override scores with a custom scoring function - if (Scorer.score) results.forEach((item) => (item[4] = Scorer.score(item))); - - // now sort the results by score (in opposite order of appearance, since the - // display function below uses pop() to retrieve items) and then - // alphabetically - results.sort((a, b) => { - const leftScore = a[4]; - const rightScore = b[4]; - if (leftScore === rightScore) { - // same score: sort alphabetically - const leftTitle = a[1].toLowerCase(); - const rightTitle = b[1].toLowerCase(); - if (leftTitle === rightTitle) return 0; - return leftTitle > rightTitle ? -1 : 1; // inverted is intentional - } - return leftScore > rightScore ? 1 : -1; - }); + if (Scorer.score) { + normalResults.forEach((item) => (item[4] = Scorer.score(item))); + nonMainIndexResults.forEach((item) => (item[4] = Scorer.score(item))); + } + + // Sort each group of results by score and then alphabetically by name. + normalResults.sort(_orderResultsByScoreThenName); + nonMainIndexResults.sort(_orderResultsByScoreThenName); + + // Combine the result groups in (reverse) order. + // Non-main index entries are typically arbitrary cross-references, + // so display them after other results. + let results = [...nonMainIndexResults, ...normalResults]; // remove duplicate search results // note the reversing of results, so that in the case of duplicates, the highest-scoring entry is kept @@ -361,7 +398,12 @@ const Search = { return acc; }, []); - results = results.reverse(); + return results.reverse(); + }, + + query: (query) => { + const [searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms] = Search._parseQuery(query); + const results = Search._performSearch(searchQuery, searchTerms, excludedTerms, highlightTerms, objectTerms); // for debugging //Search.lastresults = results.slice(); // a copy @@ -466,14 +508,18 @@ const Search = { // add support for partial matches if (word.length > 2) { const escapedWord = _escapeRegExp(word); - Object.keys(terms).forEach((term) => { - if (term.match(escapedWord) && !terms[word]) - arr.push({ files: terms[term], score: Scorer.partialTerm }); - }); - Object.keys(titleTerms).forEach((term) => { - if (term.match(escapedWord) && !titleTerms[word]) - arr.push({ files: titleTerms[word], score: Scorer.partialTitle }); - }); + if (!terms.hasOwnProperty(word)) { + Object.keys(terms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: terms[term], score: Scorer.partialTerm }); + }); + } + if (!titleTerms.hasOwnProperty(word)) { + Object.keys(titleTerms).forEach((term) => { + if (term.match(escapedWord)) + arr.push({ files: titleTerms[term], score: Scorer.partialTitle }); + }); + } } // no match but word was a required one @@ -496,9 +542,8 @@ const Search = { // create the mapping files.forEach((file) => { - if (fileMap.has(file) && fileMap.get(file).indexOf(word) === -1) - fileMap.get(file).push(word); - else fileMap.set(file, [word]); + if (!fileMap.has(file)) fileMap.set(file, [word]); + else if (fileMap.get(file).indexOf(word) === -1) fileMap.get(file).push(word); }); }); @@ -549,8 +594,8 @@ const Search = { * search summary for a given text. keywords is a list * of stemmed words. */ - makeSearchSummary: (htmlText, keywords) => { - const text = Search.htmlToText(htmlText); + makeSearchSummary: (htmlText, keywords, anchor) => { + const text = Search.htmlToText(htmlText, anchor); if (text === "") return null; const textLower = text.toLowerCase(); diff --git a/latest/design_docs/cached_outputs.html b/latest/design_docs/cached_outputs.html index 16f071fc00..3f4b82b394 100644 --- a/latest/design_docs/cached_outputs.html +++ b/latest/design_docs/cached_outputs.html @@ -14,7 +14,7 @@ - + diff --git a/latest/design_docs/compass_package.html b/latest/design_docs/compass_package.html index 0d1f2a67f6..aa2e963746 100644 --- a/latest/design_docs/compass_package.html +++ b/latest/design_docs/compass_package.html @@ -14,7 +14,7 @@ - + diff --git a/latest/design_docs/index.html b/latest/design_docs/index.html index 42051576aa..663a636278 100644 --- a/latest/design_docs/index.html +++ b/latest/design_docs/index.html @@ -14,8 +14,9 @@ - + + diff --git a/latest/design_docs/template.html b/latest/design_docs/template.html index 40a9c60919..2e481a31f2 100644 --- a/latest/design_docs/template.html +++ b/latest/design_docs/template.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/api.html b/latest/developers_guide/api.html index 21af13ec07..6b49d76825 100644 --- a/latest/developers_guide/api.html +++ b/latest/developers_guide/api.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/building_docs.html b/latest/developers_guide/building_docs.html index 03bf89ec6a..f669b6565b 100644 --- a/latest/developers_guide/building_docs.html +++ b/latest/developers_guide/building_docs.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/command_line.html b/latest/developers_guide/command_line.html index c996dde4de..893e374f94 100644 --- a/latest/developers_guide/command_line.html +++ b/latest/developers_guide/command_line.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/deploying_spack.html b/latest/developers_guide/deploying_spack.html index 7e05ac8226..75f75b18eb 100644 --- a/latest/developers_guide/deploying_spack.html +++ b/latest/developers_guide/deploying_spack.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/docs.html b/latest/developers_guide/docs.html index a09e8a81af..f402e43bf7 100644 --- a/latest/developers_guide/docs.html +++ b/latest/developers_guide/docs.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/framework.html b/latest/developers_guide/framework.html index 70134a836d..e7a615a55f 100644 --- a/latest/developers_guide/framework.html +++ b/latest/developers_guide/framework.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/generated/compass.MpasCore.add_test_group.html b/latest/developers_guide/generated/compass.MpasCore.add_test_group.html index de74fe6956..fe1c69f95f 100644 --- a/latest/developers_guide/generated/compass.MpasCore.add_test_group.html +++ b/latest/developers_guide/generated/compass.MpasCore.add_test_group.html @@ -14,7 +14,7 @@ - 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compass.landice.tests.ismip6_forcing.atmosphere.process_smb.ProcessSMBParameters:
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compass.landice.tests.ismip6_forcing.atmosphere.process_smb_racmo.ProcessSmb
Parameters:
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+ diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.Ismip6Run.html b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.Ismip6Run.html index 6047784dd6..85ced611b1 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.Ismip6Run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.Ismip6Run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.Ismip6AisProj2300.configure.html b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.Ismip6AisProj2300.configure.html index 39f4caa47e..ff9eea094f 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.Ismip6AisProj2300.configure.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.Ismip6AisProj2300.configure.html @@ -14,7 +14,7 @@ - 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+ diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.html b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.html index d4b2b219da..b283b16cd6 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.html @@ -14,7 +14,7 @@ - + @@ -139,7 +139,7 @@

compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUp

Set up a new experiment

Parameters:
-

exp (experiment) –

+

exp (experiment)

diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.run.html index c06ecbffa9..f16a65f4da 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.setup.html b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.setup.html index 57286a9bf5..8498787274 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.setup.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.ismip6_run.ismip6_ais_proj2300.set_up_experiment.SetUpExperiment.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.IsunnguataSermia.html b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.IsunnguataSermia.html index e176790565..7b8ad7e985 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.IsunnguataSermia.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.IsunnguataSermia.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.html b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.html index 3aacf56fb3..8f577ebf8c 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.run.html index 2fd7c6f6d6..5b6f1b4a83 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh.Mesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.html b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.html index dcf2d095d4..879561d75a 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.run.html index ccd5f0dafd..ca4ea6c2a1 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.Kangerlussuaq.html b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.Kangerlussuaq.html index f559401ebf..5743675b5b 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.Kangerlussuaq.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.Kangerlussuaq.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.html b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.html index 133252e778..7582f5a736 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.run.html index 5db6aef317..ff9972eb97 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh.Mesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.html b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.html index e3eef2ed60..76b37029e3 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.run.html index c678f2699d..ea8869552b 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.KogeBugtS.html b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.KogeBugtS.html index cc783cf4a7..8eec597247 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.KogeBugtS.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.KogeBugtS.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.html b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.html index dd8d40c0ef..a52f22b855 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.run.html index e970ca8b86..3ba3ce7491 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh.Mesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.html b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.html index 62961a9c91..37244c73f4 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.run.html index b5e9e0be47..3e676b36ab 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.MeshModifications.html b/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.MeshModifications.html index 33c863d547..1f1f80a3d8 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.MeshModifications.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.MeshModifications.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.SubdomainExtractor.html b/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.SubdomainExtractor.html index 957227e229..49d8618a8a 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.SubdomainExtractor.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.SubdomainExtractor.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.extract_region.ExtractRegion.html b/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.extract_region.ExtractRegion.html index 1a8c33ffbe..864d000509 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.extract_region.ExtractRegion.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mesh_modifications.subdomain_extractor.extract_region.ExtractRegion.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.MISMIPplus.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.MISMIPplus.html index bce95e0270..4044184c6c 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.MISMIPplus.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.MISMIPplus.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.constrain_resources.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.constrain_resources.html index 59c6c5799e..066cdd60d3 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.constrain_resources.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.constrain_resources.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.html index 5f1e10d371..625004d0e7 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.run.html index 248d744c2c..b7f61e3e98 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.setup.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.setup.html index 45b5313694..e3aed2ee2b 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.setup.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.run_model.RunModel.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.html index c02997bb5b..51692d3ae3 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.run.html index 8c31bdc7a4..fda7e940ab 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.SetupMesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.calculate_mesh_params.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.calculate_mesh_params.html index 45a502c5d7..a32163b350 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.calculate_mesh_params.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.calculate_mesh_params.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.center_trough.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.center_trough.html index f047d32c0c..a976ee4c24 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.center_trough.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.center_trough.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP.html index e5688c850e..9cc5325fdc 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP.html @@ -14,7 +14,7 @@ - + @@ -134,7 +134,7 @@

compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIPcompass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP(ds_mesh)[source]
Parameters:
-

ds_mesh (xarray.Dataset) –

+

ds_mesh (xarray.Dataset)

diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.html index e503f9c973..7ba10bf80a 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.validate.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.validate.html index 0c6acb6f45..a2aac96b09 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.validate.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.smoke_test.SmokeTest.validate.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.configure.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.configure.html index de1f81d0ac..830d2220a3 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.configure.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.configure.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.html index 14c1319d92..4a5437672a 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.spin_up.SpinUp.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.approx_cell_count.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.approx_cell_count.html index 0b104cdfb6..532a3c35c3 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.approx_cell_count.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.approx_cell_count.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.exact_cell_count.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.exact_cell_count.html index 0fa6d90ef8..0731002961 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.exact_cell_count.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.exact_cell_count.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.get_ntasks_from_cell_count.html b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.get_ntasks_from_cell_count.html index 8ccc2e5a62..63f77f8a99 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.get_ntasks_from_cell_count.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.mismipplus.tasks.get_ntasks_from_cell_count.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.Thwaites.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.Thwaites.html index f80eb45dd2..65411cf2fa 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.Thwaites.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.Thwaites.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.html index 9ff529bd5d..20aac8c40a 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.run.html index 6866f2afec..4698671c8e 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.decomposition_test.DecompositionTest.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.html index f7d3c9c1e1..2cbb7ecd15 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.run.html index c64cf9182e..bb04d3891b 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh.Mesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh_gen.MeshGen.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh_gen.MeshGen.html index ffcd88b84c..09f0444c5c 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh_gen.MeshGen.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.mesh_gen.MeshGen.html @@ -14,7 +14,7 @@ - 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+ diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.html index 8d98c9d75f..7bc3aac402 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.run.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.run.html index b259b00917..d2ec92af74 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.run.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.setup.html b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.setup.html index f278cd136d..cc1623b3da 100644 --- a/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.setup.html +++ b/latest/developers_guide/landice/generated/compass.landice.tests.thwaites.run_model.RunModel.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/index.html b/latest/developers_guide/landice/index.html index 723a1f8c57..2138579a1d 100644 --- a/latest/developers_guide/landice/index.html +++ b/latest/developers_guide/landice/index.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/antarctica.html b/latest/developers_guide/landice/test_groups/antarctica.html index 899b8fd365..6ac3285c99 100644 --- a/latest/developers_guide/landice/test_groups/antarctica.html +++ b/latest/developers_guide/landice/test_groups/antarctica.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/calving_dt_convergence.html b/latest/developers_guide/landice/test_groups/calving_dt_convergence.html index 25a2abf19d..37c23dc3b4 100644 --- a/latest/developers_guide/landice/test_groups/calving_dt_convergence.html +++ b/latest/developers_guide/landice/test_groups/calving_dt_convergence.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/circular_shelf.html b/latest/developers_guide/landice/test_groups/circular_shelf.html index 71a1c0a21f..bfdb26f979 100644 --- a/latest/developers_guide/landice/test_groups/circular_shelf.html +++ b/latest/developers_guide/landice/test_groups/circular_shelf.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/crane.html b/latest/developers_guide/landice/test_groups/crane.html index 98af70b40d..ef45bc53ad 100644 --- a/latest/developers_guide/landice/test_groups/crane.html +++ b/latest/developers_guide/landice/test_groups/crane.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/dome.html b/latest/developers_guide/landice/test_groups/dome.html index 288e12cd93..e2de9f65ff 100644 --- a/latest/developers_guide/landice/test_groups/dome.html +++ b/latest/developers_guide/landice/test_groups/dome.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/eismint2.html b/latest/developers_guide/landice/test_groups/eismint2.html index abbea2e11a..473d1bcc00 100644 --- a/latest/developers_guide/landice/test_groups/eismint2.html +++ b/latest/developers_guide/landice/test_groups/eismint2.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/ensemble_generator.html b/latest/developers_guide/landice/test_groups/ensemble_generator.html index 994e87f925..df59da26d6 100644 --- a/latest/developers_guide/landice/test_groups/ensemble_generator.html +++ b/latest/developers_guide/landice/test_groups/ensemble_generator.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/enthalpy_benchmark.html b/latest/developers_guide/landice/test_groups/enthalpy_benchmark.html index f56b5ce411..9c84afa410 100644 --- a/latest/developers_guide/landice/test_groups/enthalpy_benchmark.html +++ b/latest/developers_guide/landice/test_groups/enthalpy_benchmark.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/greenland.html b/latest/developers_guide/landice/test_groups/greenland.html index c9fa471563..d84bcfe0ab 100644 --- a/latest/developers_guide/landice/test_groups/greenland.html +++ b/latest/developers_guide/landice/test_groups/greenland.html @@ -14,7 +14,7 @@ - + @@ -213,6 +213,16 @@

meshThe compass.landice.tests.greenland.mesh_gen.MeshGen calls the compass.landice.tests.greenland.mesh.Mesh to create the variable resolution Greenland Ice Sheet mesh.

+

The mesh generation is based around 1- and 2-km reference datasets, which +are updated in a number of ways directly from high resolution source +data. In the future, a complete workflow from source datasets may +replace this hybrid method.

+

Once the mesh is created, scrip files and the associated weights files +are created for the mesh and observational data sets. Then, ice geometry and +velocity observations are conservatively remapped from BedMachine v5 and +MEaSUREs 2006-2010 data sets. Finally, there is some cleanup to set large +velocity uncertainties outside the ice mask, check the sign of the basal heat +flux, and set reasonable values for dH/dt and its uncertainty.

diff --git a/latest/developers_guide/landice/test_groups/humboldt.html b/latest/developers_guide/landice/test_groups/humboldt.html index 6e05fb5050..e33175d5b9 100644 --- a/latest/developers_guide/landice/test_groups/humboldt.html +++ b/latest/developers_guide/landice/test_groups/humboldt.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/hydro_radial.html b/latest/developers_guide/landice/test_groups/hydro_radial.html index b9f9f115fb..42a2d52af1 100644 --- a/latest/developers_guide/landice/test_groups/hydro_radial.html +++ b/latest/developers_guide/landice/test_groups/hydro_radial.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/index.html b/latest/developers_guide/landice/test_groups/index.html index df56ea3307..2f36e1fada 100644 --- a/latest/developers_guide/landice/test_groups/index.html +++ b/latest/developers_guide/landice/test_groups/index.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/ismip6_forcing.html b/latest/developers_guide/landice/test_groups/ismip6_forcing.html index 2e5741f42a..a7b25aea11 100644 --- a/latest/developers_guide/landice/test_groups/ismip6_forcing.html +++ b/latest/developers_guide/landice/test_groups/ismip6_forcing.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/ismip6_run.html b/latest/developers_guide/landice/test_groups/ismip6_run.html index 78da8b597e..bab1dfcef9 100644 --- a/latest/developers_guide/landice/test_groups/ismip6_run.html +++ b/latest/developers_guide/landice/test_groups/ismip6_run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/isunnguata_sermia.html b/latest/developers_guide/landice/test_groups/isunnguata_sermia.html index 6aa4ff3e9c..884ca71f76 100644 --- a/latest/developers_guide/landice/test_groups/isunnguata_sermia.html +++ b/latest/developers_guide/landice/test_groups/isunnguata_sermia.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/kangerlussuaq.html b/latest/developers_guide/landice/test_groups/kangerlussuaq.html index c6d5b3b96b..69387efb83 100644 --- a/latest/developers_guide/landice/test_groups/kangerlussuaq.html +++ b/latest/developers_guide/landice/test_groups/kangerlussuaq.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/koge_bugt_s.html b/latest/developers_guide/landice/test_groups/koge_bugt_s.html index f921d90407..b21755bd1d 100644 --- a/latest/developers_guide/landice/test_groups/koge_bugt_s.html +++ b/latest/developers_guide/landice/test_groups/koge_bugt_s.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/mesh_modifications.html b/latest/developers_guide/landice/test_groups/mesh_modifications.html index b20600bf20..c1209b2b4e 100644 --- a/latest/developers_guide/landice/test_groups/mesh_modifications.html +++ b/latest/developers_guide/landice/test_groups/mesh_modifications.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/landice/test_groups/mismipplus.html b/latest/developers_guide/landice/test_groups/mismipplus.html index d7e4370ca2..47775e04ce 100644 --- a/latest/developers_guide/landice/test_groups/mismipplus.html +++ b/latest/developers_guide/landice/test_groups/mismipplus.html @@ -14,7 +14,7 @@ - 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+ diff --git a/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.adjust_ssh.html b/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.adjust_ssh.html index 34e7076bc5..0c622b2614 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.adjust_ssh.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.adjust_ssh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.compute_land_ice_pressure_and_draft.html b/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.compute_land_ice_pressure_and_draft.html index abb3b318a4..09c99c590f 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.compute_land_ice_pressure_and_draft.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.iceshelf.compute_land_ice_pressure_and_draft.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.html b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.html index b3eb688db2..488b4e1cbd 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.run.html b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.run.html index 3afa477133..c4ef7bf58f 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.setup.html index dd3f03a230..ab6eaf9b18 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.CullMeshStep.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.cull_mesh.html b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.cull_mesh.html index c3fe024030..592ff5eec5 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.cull_mesh.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.mesh.cull.cull_mesh.html @@ -14,7 +14,7 @@ - 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+ diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_3d_field_top_bot_section.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_3d_field_top_bot_section.html index b98da28ae4..6a70cd386e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_3d_field_top_bot_section.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_3d_field_top_bot_section.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_barotropic_streamfunction.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_barotropic_streamfunction.html index 171b6b9fee..271639f505 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_barotropic_streamfunction.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.plot_barotropic_streamfunction.html @@ -14,7 +14,7 @@ - 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compass.ocean.tests.lock_exchange.initial_state.InitialState
Parameters:
-

test_case (compass.TestCase) –

+

test_case (compass.TestCase)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.initial_state.InitialState.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.initial_state.InitialState.run.html index 39f7a4202f..92b09d6c2c 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.initial_state.InitialState.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.initial_state.InitialState.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.nonhydro.Nonhydro.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.nonhydro.Nonhydro.html index 9ed4ae6a6a..ce6498dd66 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.nonhydro.Nonhydro.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.nonhydro.Nonhydro.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.visualize.Visualize.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.visualize.Visualize.html index af72921d06..71ff0bf1a6 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.visualize.Visualize.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.lock_exchange.visualize.Visualize.html @@ -14,7 +14,7 @@ - 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+ diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.configure.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.configure.html index 9ed0e6c44a..e035e44f3a 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.configure.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.configure.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.html index bcba9d5408..35f09236b1 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.SolitaryWave.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.html index 4b10599592..33c2f88988 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.run.html index f1853404e7..3e8f938c39 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.setup.html index db145ac069..5e122e2b65 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.forward.Forward.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.html index 3c9327bcdf..4f56eb39dc 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.html @@ -14,7 +14,7 @@ - + @@ -140,7 +140,7 @@

compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState

Create the step

Parameters:
-

test_case (compass.TestCase) –

+

test_case (compass.TestCase)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.run.html index 7423eebf8d..38e47a5c3d 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.setup.html index 0e43e39881..76c92b97a8 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.html index 6cca1c915b..ed86f89f36 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.run.html index fca248ff4b..e5b76523dd 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.setup.html index 4c477e2f0f..011423be4b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.solitary_wave.visualize.Visualize.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.configure.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.configure.html index 7937874277..ca14a2934c 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.configure.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.configure.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.html index 9272e4134e..32346b5501 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.StratifiedSeiche.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.html index 924d749176..3cbdb29c76 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.run.html index b331d2ac02..4d7049f047 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.setup.html index 5bff9bfc82..8d5b19af28 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.forward.Forward.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.html index 60f248698d..7b33f22a26 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.html @@ -14,7 +14,7 @@ - + @@ -140,7 +140,7 @@

compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState

Create the step

Parameters:
-

test_case (compass.TestCase) –

+

test_case (compass.TestCase)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.run.html index 7344435ffd..1777eedf1b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.setup.html index 92fed529e4..ab7e0c4be9 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.html index 700b9e2078..dc0b78e1f2 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.run.html index ca95e96735..1ea2300004 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.setup.html index 0fb61b6ec4..ec5810d580 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.nonhydro.stratified_seiche.visualize.Visualize.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.Overflow.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.Overflow.html index 1f75002ffe..a4ce95f226 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.Overflow.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.Overflow.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.default.Default.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.default.Default.html index 071064d8b6..ee0aba25ca 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.default.Default.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.default.Default.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.html index 8062985045..69cc11084e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.run.html index 435374e054..2a9d71dc94 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.HydroVsNonhydro.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.HydroVsNonhydro.html index 22b290f3e2..80aab79375 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.HydroVsNonhydro.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.HydroVsNonhydro.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.html index fa909751a3..bbceede989 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.run.html index d6ded84068..ff7cb69b87 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.html index f0a850e036..99c92555a6 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.run.html index 71d34b8259..886d0db403 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.hydro_vs_nonhydro.visualize.Visualize.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.html index 11df25f57c..4f74443ed7 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.html @@ -14,7 +14,7 @@ - + @@ -140,7 +140,7 @@

compass.ocean.tests.overflow.initial_state.InitialState

Create the step

Parameters:
-

test_case (compass.TestCase) –

+

test_case (compass.TestCase)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.run.html index 6d9ce983a3..2c93ccd89c 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state.InitialState.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.html index 7852d603c8..57b64838da 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.run.html index de3ac76873..04c1b296ae 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.nonhydro.Nonhydro.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.nonhydro.Nonhydro.html index f1bd453bcd..a4cae536a7 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.nonhydro.Nonhydro.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.overflow.nonhydro.Nonhydro.html @@ -14,7 +14,7 @@ - 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+ diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.Soma.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.Soma.html index 21f47d35ce..aa7fac386d 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.Soma.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.Soma.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.html index b6644bddfc..8cedca48ac 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.run.html index 327608ff8c..0b5042d044 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.analysis.Analysis.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.html index dbec9ed9c0..5803e7bbcf 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.run.html index 65e4f66205..860fea63a8 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.html index 87e9a55ccd..b1851e28b9 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.run.html index e05a05c113..5147fd31c9 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.initial_state.InitialState.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.html index e4aa28d954..594e30a5c6 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.validate.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.validate.html index 8ef3b7721c..e1f012984b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.validate.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.soma.soma_test_case.SomaTestCase.validate.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.SphereTransport.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.SphereTransport.html index d7e2865d65..49202d7e4e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.SphereTransport.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.SphereTransport.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.configure.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.configure.html index 4f5a327264..6c84a5c08b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.configure.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.configure.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.html index 5b2fe01984..e323ac619b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.html @@ -14,7 +14,7 @@ - + @@ -135,7 +135,7 @@

compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers

A test case for 2D transport on the sphere

Variables:
-

resolutions (list of int) –

+

resolutions (list of int)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.run.html index a05a9839b5..b3222e8d4b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.CorrelatedTracers2D.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.html index 89edd6a4b3..804e595c5e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.run.html index b8076b73ac..26efdd1dfd 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.analysis.Analysis.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.get_timestep_str.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.get_timestep_str.html index 7a42437965..01590dc1be 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.get_timestep_str.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.get_timestep_str.html @@ -14,7 +14,7 @@ - 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+ diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.setup.html index 36f09451c7..b966c5c505 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.html index 8b617e6c94..8996d5cd7d 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.run.html index 6bad4fc763..08a0e5cbe1 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.build_cell_width_lat_lon.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.build_cell_width_lat_lon.html index d99ea2556d..8bc683d0e8 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.build_cell_width_lat_lon.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.build_cell_width_lat_lon.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.html index c93807e595..e1493ed347 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.run.html index 0c8a97b0f4..9c6d3f8389 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.configure.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.configure.html index 1e10e704af..32e384b545 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.configure.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.configure.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.html index 3c221da000..c52b21981a 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.html @@ -14,7 +14,7 @@ - + @@ -135,7 +135,7 @@

compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D
Variables:
-

resolutions (list of int) –

+

resolutions (list of int)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.run.html index e3212222ad..2124dbeba1 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.Divergent2D.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.html index 244434e922..a16e7ae00e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.run.html index 0267de5eb5..b4c897bda0 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.analysis.Analysis.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.get_timestep_str.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.get_timestep_str.html index 3152f402d0..d786b1612a 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.get_timestep_str.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.get_timestep_str.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.html index 98d49d942e..85618e23da 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.run.html index f55a656a9e..0708af5aeb 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.setup.html index bc7d6222cd..5e1c4b0f5e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.html index 5d9961faaf..d5fbc9d9e8 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.run.html index 5d150c0e71..6a5eb03075 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.init.Init.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.build_cell_width_lat_lon.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.build_cell_width_lat_lon.html index 111bac0cbf..0d9645c406 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.build_cell_width_lat_lon.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.build_cell_width_lat_lon.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.html index c3102b7f82..0aea885c84 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.run.html index ad833cc38d..d9e5701e95 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.configure.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.configure.html index 13d65f9443..887104ac5e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.configure.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.configure.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.html index 369fbed267..6e5c774067 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.html @@ -14,7 +14,7 @@ - + @@ -135,7 +135,7 @@

compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D

A test case for 2D transport on the sphere

Variables:
-

resolutions (list of int) –

+

resolutions (list of int)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.run.html index 5844e69175..7d1c72f860 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.html index c7ab5207dc..7bbf10ba5e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.run.html index 6d3c822869..ffcadade0e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.analysis.Analysis.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.get_timestep_str.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.get_timestep_str.html index 57f0a02556..4fef0139c9 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.get_timestep_str.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.get_timestep_str.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.html index f31046783e..de4312de3b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.run.html index 48d9b9790d..a0be37b320 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.setup.html index cdaf3f25e6..461ed16d1b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.setup.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.html index dee61b9f5d..00a3710ab3 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.run.html index 77acb268b9..f1dd04150d 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.build_cell_width_lat_lon.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.build_cell_width_lat_lon.html index 0cbdea3aa3..bb6cfc7b81 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.build_cell_width_lat_lon.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.build_cell_width_lat_lon.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.html index c63239bc9e..e49a7527e8 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.run.html index 1bbb10312f..6bbe05361b 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_convergence_rates.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_convergence_rates.html index 7a7564c620..4f7eca1716 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_convergence_rates.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_convergence_rates.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_error_from_output_ncfile.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_error_from_output_ncfile.html index 2a076e799a..ce53a9b0d6 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_error_from_output_ncfile.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.compute_error_from_output_ncfile.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.make_convergence_arrays.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.make_convergence_arrays.html index 63dfdf63c6..c043ef9c19 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.make_convergence_arrays.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.make_convergence_arrays.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_convergence.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_convergence.html index c9546014b6..88c5d88cde 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_convergence.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_convergence.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_filament.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_filament.html index ef12705380..c901331917 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_filament.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_filament.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_over_and_undershoot_errors.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_over_and_undershoot_errors.html index db2d3cbcdf..fe95659fcb 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_over_and_undershoot_errors.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_over_and_undershoot_errors.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_sol.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_sol.html index 3109f2e98c..2f1fddd462 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_sol.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.plot_sol.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_data_as_csv.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_data_as_csv.html index 4a1f7cc769..27fdebbdec 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_data_as_csv.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_data_as_csv.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_error_conv_table.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_error_conv_table.html index bf07c768bc..78e4e495c5 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_error_conv_table.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.print_error_conv_table.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.read_ncl_rgb_file.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.read_ncl_rgb_file.html index dcc6b4cff5..ea55bc60ee 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.read_ncl_rgb_file.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.process_output.read_ncl_rgb_file.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.configure.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.configure.html index 2f8ca78556..ca2a719126 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.configure.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.configure.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.html index 24641f905b..46577768fa 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.html @@ -14,7 +14,7 @@ - + @@ -135,7 +135,7 @@

compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D
Variables:
-

resolutions (list of int) –

+

resolutions (list of int)

diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.run.html index 83af141239..0a159776cc 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.Rotation2D.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.html index 65091c0ae1..a1ce2a330e 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.run.html index e016c4df07..62e9c46108 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.analysis.Analysis.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.get_timestep_str.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.get_timestep_str.html index c53e6c9d17..23376b9da6 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.get_timestep_str.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.get_timestep_str.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.html index 9cc1f2967d..f86bf37220 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.run.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.run.html index d6ce31cffa..1230084f7d 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.run.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.setup.html b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.setup.html index 75eb8ddb15..155b485282 100644 --- a/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.setup.html +++ b/latest/developers_guide/ocean/generated/compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.setup.html @@ -14,7 +14,7 @@ - + diff --git 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"cull": [1, 9, 78, 83, 85, 94, 330, 331, 484, 485, 557, 604, 855, 891, 892, 893, 895, 897, 898, 900, 901, 902, 903, 904, 905, 908, 913, 914, 921, 922, 923, 925, 928, 931, 933, 936, 937, 942, 943, 944, 947, 964, 966, 970, 977, 980, 981], "woa23": [1, 6, 476, 479, 862, 895, 914, 915, 921, 959, 964, 985], "switch": [1, 7, 922, 924, 945, 961, 962, 982], "treat": [1, 914, 915, 921], "progress": [1, 70, 342, 348, 624, 626, 921, 934], "intermix": 1, "continu": [1, 3, 7, 172, 914, 920, 922, 927, 934, 959, 964, 970, 973], "azur": 1, "pipelin": 1, "doc": [1, 5, 8, 922, 923, 953, 986], "renam": [1, 220, 223, 225, 229, 231, 237, 239, 242, 245, 249, 252, 255, 319, 325, 340, 901, 915, 928, 940], "titl": [1, 259, 624, 626], "tabl": [1, 9, 798, 916, 946, 952, 983], "tree": [1, 8, 919, 923], "0_doc": 1, "brows": [1, 922, 923], "index": [1, 5, 9, 88, 94, 259, 340, 882, 883, 884, 885, 886, 887, 888, 889, 914, 922, 923, 930, 932, 938, 957], "html": [1, 5, 926, 958, 974], "keep": [1, 3, 6, 7, 9, 12, 37, 599, 895, 914, 916, 921, 923, 924, 940, 970], "track": [1, 9, 12, 895, 914, 916, 977, 982], "thorough": 1, "absolut": [1, 6, 9, 12, 13, 37, 71, 72, 74, 312, 890, 895, 914, 916, 921, 924, 964, 983], "sure": [1, 6, 7, 9, 76, 312, 337, 361, 373, 382, 399, 426, 432, 509, 513, 576, 890, 891, 895, 898, 901, 912, 914, 915, 916, 918, 921, 922, 923, 924, 930, 932, 933, 934, 936, 937, 938, 941, 947, 952, 953, 960, 963, 964, 967], "present": [1, 297, 340, 348, 506, 607, 895, 912, 916, 920, 921, 922, 923, 941, 945, 962, 964, 973], "figur": [1, 9, 628, 794, 796, 914, 923, 924, 930, 932, 933, 938], "implicitli": 1, "repositori": [1, 78, 337, 914, 919, 921, 922, 923, 983], "affect": [1, 7, 9, 893, 914, 916, 934, 954, 959], "immedi": [1, 44, 914, 916, 922, 923], "noth": [1, 9, 326, 337, 895, 917, 940, 963, 975, 976, 978, 979], "preclud": 1, "wouldn": 1, "limit": [1, 7, 78, 92, 156, 319, 331, 895, 916, 919, 929, 934, 946], "review": [1, 941], "agre": 1, "column": [1, 796, 896, 901, 916, 923, 935, 954, 965, 967, 970, 983], "eas": [1, 922], "shallow": [1, 10, 916, 932, 975, 978, 980], "water": [1, 10, 893, 895, 901, 902, 906, 922, 954, 960, 961, 962, 964, 967, 969, 970, 971, 974, 975, 977], "he": 1, "down": [1, 255, 687, 882, 883, 884, 885, 886, 887, 888, 889, 898, 901, 905, 921, 957, 974], "road": 1, "86": 1, "higher": [1, 895, 922, 959, 964, 971, 974, 982], "subject": 1, "thing": [1, 6, 333, 334, 335, 337, 338, 914, 915, 919, 921, 922, 923], "proof": 1, "concept": [1, 914, 915, 918, 984], "250": [1, 895, 896, 921, 923, 957, 965, 973, 982], "thick": [1, 78, 82, 83, 87, 88, 89, 94, 210, 313, 317, 318, 320, 321, 332, 340, 342, 599, 607, 882, 886, 887, 888, 889, 891, 893, 895, 896, 898, 900, 901, 902, 903, 904, 921, 924, 928, 930, 935, 937, 942, 943, 944, 946, 956, 957, 959, 960, 961, 962, 964, 965, 967, 969, 970, 973], "245": [1, 7], "imposs": 1, "effect": [1, 78, 925, 928, 931, 934, 942, 945, 970, 980], "ask": [1, 337, 921, 929, 964], "evolv": [1, 340, 919, 934, 954, 957, 970, 973], "declar": [1, 3, 8], "good": [1, 7, 9, 12, 331, 895, 914, 916, 920, 921, 922, 923], "merg": [1, 959], "intent": [1, 9], "ongo": 1, "basi": [1, 959], "demonstr": [1, 906, 914, 922, 923, 972, 982], "compass": [2, 3, 5, 8, 9, 78, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 325, 326, 327, 328, 329, 330, 331, 332, 333, 335, 336, 337, 340, 890, 891, 892, 893, 894, 895, 896, 897, 898, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, 917, 918, 920, 921, 922, 924, 925, 926, 927, 928, 931, 932, 934, 937, 941, 942, 943, 944, 946, 948, 949, 950, 951, 952, 953, 958, 959, 964, 965, 968, 970, 977, 982, 984, 985], "packag": [2, 5, 6, 7, 8, 9, 13, 15, 18, 26, 29, 39, 68, 73, 74, 78, 87, 319, 325, 337, 340, 489, 659, 670, 895, 914, 916, 917, 918, 919, 920, 921, 922, 923, 940, 948, 949, 950, 951, 952, 953, 964, 968, 983], "output": [2, 6, 8, 9, 10, 12, 17, 23, 27, 35, 60, 61, 62, 66, 70, 76, 112, 114, 127, 132, 134, 142, 147, 149, 164, 169, 174, 188, 209, 216, 218, 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[3, 920], "extent": [3, 78, 83, 85, 313, 925, 982], "independ": [3, 6, 7, 319, 326, 914, 918, 934, 940], "thu": [3, 8, 914, 916, 922, 934, 940, 964, 970], "meet": [3, 969], "pde": 3, "solver": [3, 121, 123, 125, 130, 178, 184, 186, 189, 192, 198, 200, 314, 318, 320, 321, 331, 332, 902, 904, 905, 914, 916, 919, 927, 929, 930, 932, 933, 934, 936, 937, 947, 983], "steer": [3, 940], "low": [3, 186, 300, 489, 624, 626, 902, 964, 970, 971, 972, 974], "interfac": [3, 9, 325, 340, 342, 624, 627, 628, 631, 632, 633, 635, 880, 881, 882, 888, 889, 898, 901, 902, 914, 915, 916, 919, 922, 923, 954, 957, 971, 973], "sequenc": [3, 317, 318, 319, 321, 323, 332, 623, 895, 914, 915, 918, 934, 983, 984, 985], "math": 3, "almost": [3, 9, 920], "latex": 3, "2ab": 3, "imag": [3, 8, 357, 358, 622, 623, 624, 625, 626, 627, 629, 630, 631, 632, 633, 634, 635, 914, 922, 927, 930, 932, 933, 938, 964, 979], "small": [3, 9, 21, 87, 315, 337, 340, 895, 896, 912, 914, 927, 929, 930, 932, 934, 937, 948, 949, 955, 957, 967, 970, 978, 983], "jpeg": 3, "png": [3, 9, 357, 358, 712, 894, 906, 907, 910, 921, 922, 923, 927, 930, 932, 935, 938], "okai": [3, 7, 331, 895, 914, 921, 923], "centric": 3, "pseudo": 3, "item": 3, "timelin": 3, "staf": 3, "example_funct": 3, "foo": [3, 915], "configur": [3, 6, 7, 8, 9, 12, 22, 27, 38, 62, 65, 66, 68, 71, 72, 74, 101, 114, 134, 149, 158, 218, 235, 284, 288, 293, 297, 299, 319, 322, 326, 331, 337, 358, 504, 505, 512, 704, 880, 882, 883, 884, 888, 889, 892, 893, 895, 910, 915, 916, 919, 920, 922, 923, 924, 932, 934, 937, 940, 941, 946, 949, 952, 953, 954, 957, 959, 964, 966, 970, 971, 975, 977, 980, 982, 983, 984], "properli": [3, 333, 335, 336, 922, 924, 959, 979, 983], "page": [4, 8, 337, 799, 946, 948], "auto": 4, "summari": [4, 314, 929, 940, 949], "relev": [4, 8, 9, 322, 607, 921, 922, 923, 940, 948, 949, 950, 951, 952, 953, 983], "procedur": [5, 314, 337, 340, 916, 920, 921, 953], "export": [5, 7, 917], "docs_vers": 5, "test": [5, 6, 8, 9, 10, 11, 12, 17, 22, 23, 27, 28, 29, 31, 32, 33, 35, 36, 41, 44, 45, 50, 52, 55, 57, 62, 64, 65, 66, 68, 69, 70, 71, 72, 73, 74, 75, 76, 78, 79, 312, 313, 314, 315, 316, 317, 318, 319, 320, 321, 322, 323, 326, 327, 328, 329, 330, 332, 337, 340, 341, 345, 346, 347, 349, 350, 351, 353, 880, 890, 891, 892, 893, 894, 896, 897, 898, 900, 901, 902, 903, 904, 905, 906, 907, 908, 909, 910, 911, 912, 913, 916, 917, 918, 919, 925, 926, 928, 929, 930, 931, 932, 933, 934, 935, 936, 937, 938, 940, 941, 942, 943, 944, 945, 946, 947, 948, 949, 950, 951, 952, 953, 954, 955, 956, 957, 958, 960, 961, 962, 963, 965, 967, 969, 970, 971, 972, 973, 974, 975, 976, 977, 978, 979, 981, 982], "cd": [5, 7, 312, 890, 916, 921, 922, 923, 949, 983], "rm": [5, 7, 458, 895, 980], "rf": [5, 7], "developers_guid": [5, 922, 923], "_build": 5, "re": [5, 6, 7, 186, 300, 489, 891, 895, 913, 914, 915, 916, 918, 920, 921, 922, 923, 924, 949, 952, 953, 961, 962, 963, 966, 970, 975, 976, 978, 979], "reinstal": [5, 916], "view": [5, 458, 892, 916, 921], "scp": 5, "On": [5, 7, 8, 9, 337, 921, 923, 952, 986], "nersc": [5, 941, 953], "web": [5, 9, 799, 914, 924], "gatewai": 5, "transfer": [5, 914, 921], "cf": [5, 928, 934, 941, 953, 964, 983], "cdir": [5, 928, 934, 941, 953, 983], "myproj": 5, "www": [5, 259, 458, 799], "chmod": [5, 7], "r": [5, 6, 7, 895, 953, 963, 975], "ugo": [5, 7], "rx": [5, 7], "browser": [5, 953], "portal": 5, "diagnostic_output": 5, "usernam": [5, 917, 922, 949, 953], "anl": [5, 9, 914, 924], "public": [5, 8, 9, 914, 921, 924, 940], "act": [6, 599, 915, 921, 923, 957], "instal": [6, 7, 337, 916, 921, 922, 952, 953, 983], "reflect": [6, 892, 916, 975], "h": [6, 914, 921, 923, 934, 973, 975, 982], "v": [6, 81, 288, 340, 684, 685, 689, 916, 921, 964, 975, 985], "example_compact": [6, 312, 890, 914, 924], "test1": 6, "test2": 6, "displai": [6, 9, 348, 953], "messag": [6, 9, 337, 914, 917, 953], "test_expr": [6, 41], "substr": [6, 337], "express": [6, 41], "think": [6, 922], "tempat": 6, "step1": 6, "step2": 6, "underli": [6, 945], "framework": [6, 8, 27, 69, 76, 84, 85, 87, 94, 312, 890, 914, 918, 919, 922, 926, 934, 956, 958, 977, 982], "standalon": [6, 336, 337, 470, 895, 914, 924, 948, 949, 950, 951, 952, 953, 954, 983], "num": 6, "mach": [6, 12, 337, 919, 948, 949, 950, 951, 952, 953, 983], "p": [6, 7, 916, 921, 922, 924, 941, 983], "suite_nam": [6, 9, 36, 70, 72, 73, 74, 983], "case_numb": 6, "comma": [6, 9, 933, 941, 963, 975, 976, 978, 979], "requir": [6, 7, 9, 12, 22, 78, 103, 108, 125, 140, 172, 186, 200, 207, 284, 309, 312, 319, 320, 321, 331, 332, 367, 388, 403, 470, 571, 579, 587, 638, 651, 660, 671, 682, 685, 694, 754, 768, 782, 806, 890, 895, 908, 913, 914, 915, 916, 917, 919, 920, 921, 922, 923, 924, 926, 927, 931, 932, 934, 935, 936, 937, 940, 941, 942, 943, 944, 945, 946, 947, 952, 956, 957, 958, 964, 983, 984], "piec": [6, 914, 921, 922], "tell": [6, 7, 337, 916, 921], "leav": [6, 345, 914, 924, 940, 945, 967, 970], "unknown": [6, 331, 337, 921, 941, 952], "temp": 6, "baseline_dir": [6, 27, 71, 72, 74], "predefin": [6, 977], "afther": 6, "behind": [6, 915, 922], "fresh": [6, 7, 920], "resid": [6, 13], "test_suit": [6, 914], "proven": [6, 37, 912, 919, 924, 964, 981], "entir": [6, 319, 920, 921, 922, 934, 946, 960, 967, 969, 970, 985], "complet": [6, 9, 15, 18, 313, 314, 340, 916, 921, 922, 923, 927, 934, 941, 964, 983], "comparison": [6, 9, 27, 75, 76, 392, 410, 893, 895, 914, 924, 934, 962, 964, 967, 970], "against": [6, 9, 76, 331, 398, 402, 409, 435, 518, 586, 595, 650, 703, 895, 896, 908, 913, 914, 923, 927, 932, 959, 961, 962], "no_step": 6, "wherea": [6, 9, 331, 902, 904, 905, 912, 914, 964, 967, 971, 973, 974, 982, 984], "clone": [6, 7, 312, 337, 890, 914, 916, 921, 922, 923, 983], "tab": [6, 983], "full_run": [6, 895, 932, 933, 936, 938, 947, 960, 964, 967], "restart_run": [6, 103, 108, 125, 140, 186, 200, 207, 284, 309, 895, 932, 933, 936, 938, 947, 960, 964, 967], "preced": [6, 37], "serial": [6, 21, 910, 914, 921, 979], "structur": [6, 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"gnu-on-anvil"]], "Chicoma-CPU": [[949, "chicoma-cpu"]], "Hyperthreading": [[949, "hyperthreading"], [953, "hyperthreading"]], "Gnu on Chicoma-CPU": [[949, "gnu-on-chicoma-cpu"]], "Intel on Chrysalis": [[950, "intel-on-chrysalis"]], "Gnu on Chrysalis": [[950, "gnu-on-chrysalis"]], "Intel on CompyMcNodeFace": [[951, "intel-on-compymcnodeface"]], "Slurm job queueing": [[952, "slurm-job-queueing"]], "MPICH": [[952, "id4"]], "OpenMPI": [[952, "id5"]], "No MPI from conda-forge": [[952, "no-mpi-from-conda-forge"]], "Perlmutter-CPU": [[953, "perlmutter-cpu"]], "Gnu on Perlmutter-CPU": [[953, "gnu-on-perlmutter-cpu"]], "Jupyter notebook on remote data": [[953, "jupyter-notebook-on-remote-data"]], "Ice shelf-cavities": [[954, "ice-shelf-cavities"]], "Sea surface height adjustment": [[954, "sea-surface-height-adjustment"]], "Remapping topography": [[956, "remapping-topography"]], "Culling land cells": [[956, "culling-land-cells"]], "1D Grid type": [[957, "d-grid-type"]], "uniform": [[957, "uniform"]], "tanh_dz": [[957, "tanh-dz"]], "index_tanh_dz": [[957, "index-tanh-dz"]], "60layerPHC": [[957, "layerphc"]], "80layerE3SMv1": [[957, "layere3smv1"]], "100layerE3SMv1": [[957, "id1"]], "3D vertical coordinates": [[957, "d-vertical-coordinates"]], "z-star": [[957, "z-star"]], "z-level": [[957, "z-level"]], "nightly test suite": [[959, "nightly-test-suite"]], "quwisc240 test suite": [[959, "quwisc240-test-suite"]], "pr test suite": [[959, "pr-test-suite"]], "qu240_for_e3sm test suite": [[959, "qu240-for-e3sm-test-suite"]], "quwisc240_for_e3sm test suite": [[959, "quwisc240-for-e3sm-test-suite"]], "ec30to60 test suite": [[959, "ec30to60-test-suite"]], "ecwisc30to60 test suite": [[959, "ecwisc30to60-test-suite"]], "thread_test": [[960, "thread-test"]], "lts": [[961, "lts"], [975, "lts"]], "resolutions": [[963, "resolutions"], [975, "resolutions"], [976, "resolutions"], [978, "resolutions"], [979, "resolutions"]], "time step": [[963, "time-step"], [975, "time-step"], [976, "time-step"], [978, "time-step"]], "cores": [[963, "cores"], [975, "cores"], [976, "cores"], [978, "cores"]], "Shared config options": [[964, "shared-config-options"], [966, "shared-config-options"], [980, "shared-config-options"]], "Metadata": [[964, "metadata"]], "Meshes": [[964, "meshes"]], "QU240 and Icos240": [[964, "qu240-and-icos240"]], "QUwISC240 and IcoswISC240": [[964, "quwisc240-and-icoswisc240"]], "QU, Icos, QUwISC and IcoswISC": [[964, "qu-icos-quwisc-and-icoswisc"]], "EC30to60": [[964, "ec30to60"]], "ECwISC30to60": [[964, "ecwisc30to60"]], "Forward step": [[964, "forward-step"]], "initial state step": [[966, "initial-state-step"], [980, "initial-state-step"]], "interpolate atmosphere forcing step": [[966, "interpolate-atmosphere-forcing-step"]], "create pointstats file step": [[966, "create-pointstats-file-step"]], "compute topographic wave drag step": [[966, "compute-topographic-wave-drag-step"]], "sandy test case": [[966, "sandy-test-case"]], "analysis step": [[966, "analysis-step"], [980, "analysis-step"]], "Ocean0": [[970, "ocean0"]], "Ocean1": [[970, "ocean1"]], "Ocean2": [[970, "ocean2"]], "time_varying_Ocean0": [[970, "time-varying-ocean0"]], "thin_film_Ocean0": [[970, "thin-film-ocean0"]], "thin_film_tidal_forcing_Ocean0": [[970, "thin-film-tidal-forcing-ocean0"]], "Performance run": [[970, "performance-run"]], "Simulation run": [[970, "simulation-run"]], "long": [[977, "long"], [982, "long"]], "particles": [[977, "particles"], [982, "particles"]], "surface_restoring": [[977, "surface-restoring"]], "three_layer": [[977, "three-layer"]], "convergence thresholds": [[978, "convergence-thresholds"]], "parallel_N": [[979, "parallel-n"]], "serial_nLat": [[979, "serial-nlat"]], "remap bathymetry step": [[980, "remap-bathymetry-step"]], "interpolate wave drag step": [[980, "interpolate-wave-drag-step"]], "Quick Start for Users": [[983, "quick-start-for-users"]], "compass conda environment": [[983, "compass-conda-environment"]], "E3SM supported machines": [[983, "e3sm-supported-machines"]], "other machines": [[983, "other-machines"]], "Setting up test cases": [[983, "setting-up-test-cases"]], "Running a test case": [[983, "running-a-test-case"]], "Running with a job script": [[983, "running-with-a-job-script"]], "Test Cases": [[984, "test-cases"]], "Code and Documentation Versions": [[986, "code-and-documentation-versions"]]}, "indexentries": {"mpascore (class in compass)": [[10, "compass.MpasCore"]], "__init__() (compass.mpascore method)": [[10, "compass.MpasCore.__init__"]], "add_test_group() (compass.mpascore method)": [[11, "compass.MpasCore.add_test_group"]], "step (class in compass)": [[12, "compass.Step"]], "__init__() (compass.step method)": [[12, "compass.Step.__init__"]], "add_input_file() (compass.step method)": [[13, "compass.Step.add_input_file"]], "add_model_as_input() (compass.step method)": [[14, "compass.Step.add_model_as_input"]], "add_namelist_file() (compass.step method)": [[15, "compass.Step.add_namelist_file"]], "add_namelist_options() (compass.step method)": [[16, "compass.Step.add_namelist_options"]], "add_output_file() (compass.step method)": [[17, "compass.Step.add_output_file"]], "add_streams_file() (compass.step method)": [[18, "compass.Step.add_streams_file"]], "constrain_resources() (compass.step method)": [[19, "compass.Step.constrain_resources"]], "run() (compass.step method)": [[20, "compass.Step.run"]], "runtime_setup() (compass.step method)": [[21, "compass.Step.runtime_setup"]], "set_resources() (compass.step method)": [[22, "compass.Step.set_resources"]], "setup() (compass.step method)": [[23, "compass.Step.setup"]], "update_namelist_at_runtime() (compass.step method)": [[24, "compass.Step.update_namelist_at_runtime"]], "update_namelist_pio() (compass.step method)": [[25, "compass.Step.update_namelist_pio"]], "update_streams_at_runtime() (compass.step method)": [[26, "compass.Step.update_streams_at_runtime"]], "testcase (class in compass)": [[27, "compass.TestCase"]], "__init__() (compass.testcase method)": [[27, "compass.TestCase.__init__"]], "add_step() (compass.testcase method)": [[28, "compass.TestCase.add_step"]], "configure() (compass.testcase method)": [[29, "compass.TestCase.configure"]], "run() (compass.testcase method)": [[30, "compass.TestCase.run"]], "validate() (compass.testcase method)": [[31, "compass.TestCase.validate"]], "testgroup (class in compass)": [[32, "compass.TestGroup"]], "__init__() (compass.testgroup method)": [[32, "compass.TestGroup.__init__"]], "add_test_case() (compass.testgroup method)": [[33, "compass.TestGroup.add_test_case"]], "main() (in module compass.__main__)": [[34, "compass.__main__.main"]], "update_cache() (in module compass.cache)": [[35, "compass.cache.update_cache"]], "clean_cases() (in module compass.clean)": [[36, "compass.clean.clean_cases"]], "compassconfigparser (class in compass.config)": [[37, "compass.config.CompassConfigParser"]], "__init__() (compass.config.compassconfigparser method)": [[37, "compass.config.CompassConfigParser.__init__"]], "download() (in module compass.io)": [[38, "compass.io.download"]], "package_path() (in module compass.io)": [[39, "compass.io.package_path"]], "symlink() (in module compass.io)": [[40, "compass.io.symlink"]], "list_cases() (in module compass.list)": [[41, "compass.list.list_cases"]], "list_machines() (in module compass.list)": [[42, "compass.list.list_machines"]], "list_suites() (in module compass.list)": [[43, "compass.list.list_suites"]], "log_method_call() (in module compass.logging)": [[44, "compass.logging.log_method_call"]], "icosahedralmeshstep (class in compass.mesh)": [[45, "compass.mesh.IcosahedralMeshStep"]], "__init__() (compass.mesh.icosahedralmeshstep method)": [[45, "compass.mesh.IcosahedralMeshStep.__init__"]], "build_subdivisions_cell_width_lat_lon() (compass.mesh.icosahedralmeshstep method)": [[46, "compass.mesh.IcosahedralMeshStep.build_subdivisions_cell_width_lat_lon"]], "get_cell_width() (compass.mesh.icosahedralmeshstep static method)": [[47, "compass.mesh.IcosahedralMeshStep.get_cell_width"]], "get_subdivisions() (compass.mesh.icosahedralmeshstep static method)": [[48, "compass.mesh.IcosahedralMeshStep.get_subdivisions"]], "make_jigsaw_mesh() (compass.mesh.icosahedralmeshstep method)": [[49, "compass.mesh.IcosahedralMeshStep.make_jigsaw_mesh"]], "run() (compass.mesh.icosahedralmeshstep method)": [[50, "compass.mesh.IcosahedralMeshStep.run"]], "setup() (compass.mesh.icosahedralmeshstep method)": [[51, "compass.mesh.IcosahedralMeshStep.setup"]], "quasiuniformsphericalmeshstep (class in compass.mesh)": [[52, "compass.mesh.QuasiUniformSphericalMeshStep"]], "__init__() (compass.mesh.quasiuniformsphericalmeshstep method)": [[52, "compass.mesh.QuasiUniformSphericalMeshStep.__init__"]], "build_cell_width_lat_lon() (compass.mesh.quasiuniformsphericalmeshstep method)": [[53, "compass.mesh.QuasiUniformSphericalMeshStep.build_cell_width_lat_lon"]], "make_jigsaw_mesh() (compass.mesh.quasiuniformsphericalmeshstep method)": [[54, "compass.mesh.QuasiUniformSphericalMeshStep.make_jigsaw_mesh"]], "run() (compass.mesh.quasiuniformsphericalmeshstep method)": [[55, "compass.mesh.QuasiUniformSphericalMeshStep.run"]], "setup() (compass.mesh.quasiuniformsphericalmeshstep method)": [[56, "compass.mesh.QuasiUniformSphericalMeshStep.setup"]], "sphericalbasestep (class in compass.mesh.spherical)": [[57, "compass.mesh.spherical.SphericalBaseStep"]], "__init__() (compass.mesh.spherical.sphericalbasestep method)": [[57, "compass.mesh.spherical.SphericalBaseStep.__init__"]], "run() (compass.mesh.spherical.sphericalbasestep method)": [[58, "compass.mesh.spherical.SphericalBaseStep.run"]], "save_and_plot_cell_width() (compass.mesh.spherical.sphericalbasestep method)": [[59, "compass.mesh.spherical.SphericalBaseStep.save_and_plot_cell_width"]], "setup() (compass.mesh.spherical.sphericalbasestep method)": [[60, "compass.mesh.spherical.SphericalBaseStep.setup"]], "make_graph_file() (in module compass.model)": [[61, "compass.model.make_graph_file"]], "partition() (in module compass.model)": [[62, "compass.model.partition"]], "run_model() (in module compass.model)": [[63, "compass.model.run_model"]], "get_mpas_cores() (in module compass.mpas_cores)": [[64, "compass.mpas_cores.get_mpas_cores"]], "get_available_parallel_resources() (in module compass.parallel)": [[65, "compass.parallel.get_available_parallel_resources"]], "run_command() (in module compass.parallel)": [[66, "compass.parallel.run_command"]], "set_cores_per_node() (in module compass.parallel)": [[67, "compass.parallel.set_cores_per_node"]], "write() (in module compass.provenance)": [[68, "compass.provenance.write"]], "run_single_step() (in module compass.run.serial)": [[69, "compass.run.serial.run_single_step"]], "run_tests() (in module compass.run.serial)": [[70, "compass.run.serial.run_tests"]], "setup_case() (in module compass.setup)": [[71, "compass.setup.setup_case"]], "setup_cases() (in module compass.setup)": [[72, "compass.setup.setup_cases"]], "clean_suite() (in module compass.suite)": [[73, "compass.suite.clean_suite"]], "setup_suite() (in module compass.suite)": [[74, "compass.suite.setup_suite"]], "compare_timers() (in module compass.validate)": [[75, "compass.validate.compare_timers"]], "compare_variables() (in module compass.validate)": [[76, "compass.validate.compare_variables"]], "landice (class in compass.landice)": [[79, "compass.landice.Landice"]], "__init__() (compass.landice.landice method)": [[79, "compass.landice.Landice.__init__"]], "compass.landice.ais_observations": [[80, "module-compass.landice.ais_observations"]], "module": [[80, "module-compass.landice.ais_observations"], [532, "module-compass.ocean.tests.hurricane.configure"], [825, "module-compass.ocean.tests.tides.configure"]], "extrapolate_variable() (in module compass.landice.extrapolate)": [[81, "compass.landice.extrapolate.extrapolate_variable"]], "calc_mean_tf() (in module compass.landice.iceshelf_melt)": [[82, "compass.landice.iceshelf_melt.calc_mean_TF"]], "add_bedmachine_thk_to_ais_gridded_data() (in module compass.landice.mesh)": [[83, "compass.landice.mesh.add_bedmachine_thk_to_ais_gridded_data"]], "build_cell_width() (in module compass.landice.mesh)": [[84, "compass.landice.mesh.build_cell_width"]], "build_mali_mesh() (in module compass.landice.mesh)": [[85, "compass.landice.mesh.build_mali_mesh"]], "clean_up_after_interp() (in module compass.landice.mesh)": [[86, "compass.landice.mesh.clean_up_after_interp"]], "get_dist_to_edge_and_gl() (in module compass.landice.mesh)": [[87, "compass.landice.mesh.get_dist_to_edge_and_gl"]], "gridded_flood_fill() (in module compass.landice.mesh)": [[88, "compass.landice.mesh.gridded_flood_fill"]], "interp_ais_bedmachine() (in module compass.landice.mesh)": [[89, "compass.landice.mesh.interp_ais_bedmachine"]], "interp_ais_measures() (in module compass.landice.mesh)": [[90, "compass.landice.mesh.interp_ais_measures"]], "make_region_masks() (in module compass.landice.mesh)": [[91, "compass.landice.mesh.make_region_masks"]], "mpas_flood_fill() (in module compass.landice.mesh)": [[92, "compass.landice.mesh.mpas_flood_fill"]], "preprocess_ais_data() (in module compass.landice.mesh)": [[93, "compass.landice.mesh.preprocess_ais_data"]], "set_cell_width() (in module compass.landice.mesh)": [[94, "compass.landice.mesh.set_cell_width"]], "set_rectangular_geom_points_and_edges() (in module compass.landice.mesh)": [[95, "compass.landice.mesh.set_rectangular_geom_points_and_edges"]], "antarctica (class in compass.landice.tests.antarctica)": [[96, "compass.landice.tests.antarctica.Antarctica"]], "__init__() (compass.landice.tests.antarctica.antarctica method)": [[96, "compass.landice.tests.antarctica.Antarctica.__init__"]], "mesh (class in compass.landice.tests.antarctica.mesh)": [[97, "compass.landice.tests.antarctica.mesh.Mesh"]], "__init__() (compass.landice.tests.antarctica.mesh.mesh method)": [[97, "compass.landice.tests.antarctica.mesh.Mesh.__init__"]], "run() (compass.landice.tests.antarctica.mesh.mesh method)": [[98, "compass.landice.tests.antarctica.mesh.Mesh.run"]], "meshgen (class in compass.landice.tests.antarctica.mesh_gen)": [[99, "compass.landice.tests.antarctica.mesh_gen.MeshGen"]], "__init__() (compass.landice.tests.antarctica.mesh_gen.meshgen method)": [[99, "compass.landice.tests.antarctica.mesh_gen.MeshGen.__init__"]], "calvingdtconvergence (class in compass.landice.tests.calving_dt_convergence)": [[100, "compass.landice.tests.calving_dt_convergence.CalvingDtConvergence"]], "__init__() (compass.landice.tests.calving_dt_convergence.calvingdtconvergence method)": [[100, "compass.landice.tests.calving_dt_convergence.CalvingDtConvergence.__init__"]], "dtconvergencetest (class in compass.landice.tests.calving_dt_convergence.dt_convergence_test)": [[101, "compass.landice.tests.calving_dt_convergence.dt_convergence_test.DtConvergenceTest"]], "__init__() (compass.landice.tests.calving_dt_convergence.dt_convergence_test.dtconvergencetest method)": [[101, "compass.landice.tests.calving_dt_convergence.dt_convergence_test.DtConvergenceTest.__init__"]], "validate() (compass.landice.tests.calving_dt_convergence.dt_convergence_test.dtconvergencetest method)": [[102, "compass.landice.tests.calving_dt_convergence.dt_convergence_test.DtConvergenceTest.validate"]], "runmodel (class in compass.landice.tests.calving_dt_convergence.run_model)": [[103, "compass.landice.tests.calving_dt_convergence.run_model.RunModel"]], "__init__() (compass.landice.tests.calving_dt_convergence.run_model.runmodel method)": [[103, "compass.landice.tests.calving_dt_convergence.run_model.RunModel.__init__"]], "run() (compass.landice.tests.calving_dt_convergence.run_model.runmodel method)": [[104, "compass.landice.tests.calving_dt_convergence.run_model.RunModel.run"]], "circularshelf (class in compass.landice.tests.circular_shelf)": [[105, "compass.landice.tests.circular_shelf.CircularShelf"]], "__init__() (compass.landice.tests.circular_shelf.circularshelf method)": [[105, "compass.landice.tests.circular_shelf.CircularShelf.__init__"]], "decompositiontest (class in compass.landice.tests.circular_shelf.decomposition_test)": [[106, "compass.landice.tests.circular_shelf.decomposition_test.DecompositionTest"]], "__init__() (compass.landice.tests.circular_shelf.decomposition_test.decompositiontest method)": [[106, "compass.landice.tests.circular_shelf.decomposition_test.DecompositionTest.__init__"]], "run() (compass.landice.tests.circular_shelf.decomposition_test.decompositiontest method)": [[107, "compass.landice.tests.circular_shelf.decomposition_test.DecompositionTest.run"]], "runmodel (class in compass.landice.tests.circular_shelf.run_model)": [[108, 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(compass.landice.tests.circular_shelf.visualize.visualize method)": [[112, "compass.landice.tests.circular_shelf.visualize.Visualize.__init__"]], "run() (compass.landice.tests.circular_shelf.visualize.visualize method)": [[113, "compass.landice.tests.circular_shelf.visualize.Visualize.run"]], "visualize_circular_shelf() (in module compass.landice.tests.circular_shelf.visualize)": [[114, "compass.landice.tests.circular_shelf.visualize.visualize_circular_shelf"]], "crane (class in compass.landice.tests.crane)": [[115, "compass.landice.tests.crane.Crane"]], "__init__() (compass.landice.tests.crane.crane method)": [[115, "compass.landice.tests.crane.Crane.__init__"]], "mesh (class in compass.landice.tests.crane.mesh)": [[116, "compass.landice.tests.crane.mesh.Mesh"]], "__init__() (compass.landice.tests.crane.mesh.mesh method)": [[116, "compass.landice.tests.crane.mesh.Mesh.__init__"]], "run() (compass.landice.tests.crane.mesh.mesh method)": [[117, 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Supported Machine": [[337, "adding-a-new-supported-machine"]], "Adding a dynamic adjustment test": [[921, "adding-a-dynamic-adjustment-test"]], "Adding a files for E3SM test": [[921, "adding-a-files-for-e3sm-test"]], "Adding a namelist file": [[914, "adding-a-namelist-file"]], "Adding a new mesh": [[921, "adding-a-new-mesh"]], "Adding a streams file": [[914, "adding-a-streams-file"]], "Adding a template streams file": [[914, "adding-a-template-streams-file"]], "Adding a test case": [[923, "adding-a-test-case"]], "Adding a very high resolution region": [[921, "adding-a-very-high-resolution-region"]], "Adding a \u201cdefault\u201d test case": [[922, "adding-a-default-test-case"]], "Adding an initial condition and performance test": [[921, "adding-an-initial-condition-and-performance-test"]], "Adding an \u201canalysis\u201d step": [[920, "adding-an-analysis-step"]], "Adding an \u201crpe_test\u201d test case": [[922, "adding-an-rpe-test-test-case"]], "Adding namelist and streams files": [[914, "adding-namelist-and-streams-files"]], "Adding namelist options": [[914, "adding-namelist-options"]], "Adding regions of higher resolution": [[921, "adding-regions-of-higher-resolution"]], "Adding step outputs": [[922, "adding-step-outputs"]], "Adding the analysis step": [[922, "adding-the-analysis-step"], [923, "adding-the-analysis-step"]], "Adding the forward step": [[922, "adding-the-forward-step"], [923, "adding-the-forward-step"]], "Adding the init step": [[923, "adding-the-init-step"]], "Adding the initial_state step": [[922, "adding-the-initial-state-step"]], "Adding the steps to the test case": [[920, "adding-the-steps-to-the-test-case"], [922, "adding-the-steps-to-the-test-case"], [922, "id1"]], "Adding validation": [[923, "adding-validation"]], "Adding \u201cmesh\u201d, \u201cinit\u201d and \u201cforward\u201d steps": [[920, "adding-mesh-init-and-forward-steps"]], "Algorithm Design": [[1, "algorithm-design"]], "Algorithm Design (optional)": [[3, "algorithm-design-optional"]], "Algorithm Design: name-of-topic-here (same as Requirement)": [[3, "algorithm-design-name-of-topic-here-same-as-requirement"]], "Algorithm design: Ability specify/modify core counts": [[1, "algorithm-design-ability-specify-modify-core-counts"]], "Algorithm design: Considerations related to running test cases in parallel": [[1, "algorithm-design-considerations-related-to-running-test-cases-in-parallel"]], "Algorithm design: Easy batch submission": [[1, "algorithm-design-easy-batch-submission"]], "Algorithm design: Looser, more flexible directory structure": [[1, "algorithm-design-looser-more-flexible-directory-structure"]], "Algorithm design: Machine-specific data": [[1, "algorithm-design-machine-specific-data"]], "Algorithm design: Make test cases easy to understand, modify and and create": [[1, "algorithm-design-make-test-cases-easy-to-understand-modify-and-and-create"]], "Algorithm design: Resolution can be a test case parameter": [[1, 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"Cached output files": [[914, "cached-output-files"]], "Caching outputs from compass steps": [[0, "caching-outputs-from-compass-steps"]], "Chicoma": [[334, "chicoma"], [949, "chicoma"]], "Chicoma-CPU": [[949, "chicoma-cpu"]], "Chrysalis": [[335, "chrysalis"], [950, "chrysalis"]], "Classes": [[915, "classes"]], "Code Style": [[915, "code-style"]], "Code and Documentation Versions": [[986, "code-and-documentation-versions"]], "Code sharing": [[915, "code-sharing"]], "Code style for compass": [[916, "code-style-for-compass"]], "Command-line interface": [[4, "command-line-interface"], [6, "command-line-interface"]], "Comments in config files": [[9, "comments-in-config-files"]], "Compass": [[919, "compass"]], "CompyMcNodeFace": [[336, "compymcnodeface"], [951, "compymcnodeface"]], "Conda": [[7, "conda"]], "Config Files": [[924, "config-files"]], "Config files": [[9, "config-files"]], "Config options describing E3SM machines": [[7, "config-options-describing-e3sm-machines"]], "Copying input files": [[914, "copying-input-files"]], "Creating a horizontal mesh": [[922, "creating-a-horizontal-mesh"]], "Creating a vertical coordinate": [[922, "creating-a-vertical-coordinate"]], "Creating an initial condition": [[922, "creating-an-initial-condition"]], "Creating spack environments": [[7, "creating-spack-environments"]], "Creating/updating only the compass environment": [[916, "creating-updating-only-the-compass-environment"]], "Culling Meshes": [[340, "culling-meshes"]], "Culling land cells": [[956, "culling-land-cells"]], "DecompositionTest": [[315, "decompositiontest"], [317, "decompositiontest"]], "Defining config options": [[923, "defining-config-options"]], "Defining namelist options": [[922, "defining-namelist-options"], [923, "defining-namelist-options"]], "Defining namelist options and streams files": [[922, "defining-namelist-options-and-streams-files"]], "Defining streams": [[922, "defining-streams"], [923, "defining-streams"]], "Defining the run method": [[922, 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cached outputs": [[0, "design-unique-identifier-for-cached-outputs"]], "Design: updating cached outputs": [[0, "design-updating-cached-outputs"]], "Developer Tutorial: Adding a new ocean/sea ice regionally refined mesh (RRM)": [[921, "developer-tutorial-adding-a-new-ocean-sea-ice-regionally-refined-mesh-rrm"]], "Developer Tutorial: Adding a new test group": [[922, "developer-tutorial-adding-a-new-test-group"]], "Developer Tutorial: Adding a parameter study": [[920, "developer-tutorial-adding-a-parameter-study"]], "Developer Tutorial: Porting a legacy COMPASS test group": [[923, "developer-tutorial-porting-a-legacy-compass-test-group"]], "Developer's guide": [[919, null]], "Directory structure": [[914, "directory-structure"]], "Docstrings": [[8, "docstrings"]], "Documentation": [[8, "documentation"], [920, "documentation"], [922, "documentation"], [923, "documentation"]], "Download": [[9, "download"]], "Downloading and symlinking input files": [[914, 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"haney-number"]], "Hyperthreading": [[949, "hyperthreading"], [953, "hyperthreading"]], "IO": [[9, "io"]], "Ice shelf-cavities": [[954, "ice-shelf-cavities"]], "Ice-shelf cavities": [[340, "ice-shelf-cavities"], [964, "ice-shelf-cavities"]], "Icos240 and IcoswISC240": [[895, "icos240-and-icoswisc240"]], "Identifying E3SM machines": [[7, "identifying-e3sm-machines"]], "Implementation": [[0, "implementation"], [1, "implementation"], [3, "implementation"]], "Implementation: Ability specify/modify core counts": [[1, "implementation-ability-specify-modify-core-counts"]], "Implementation: Considerations related to running test cases in parallel": [[1, "implementation-considerations-related-to-running-test-cases-in-parallel"]], "Implementation: Easy batch submission": [[1, "implementation-easy-batch-submission"]], "Implementation: Looser, more flexible directory structure": [[1, "implementation-looser-more-flexible-directory-structure"]], "Implementation: Machine-specific data": [[1, "implementation-machine-specific-data"]], "Implementation: Make test cases easy to understand, modify and and create": [[1, "implementation-make-test-cases-easy-to-understand-modify-and-and-create"]], "Implementation: Resolution can be a test case parameter": [[1, "implementation-resolution-can-be-a-test-case-parameter"]], "Implementation: Shared code": [[1, "implementation-shared-code"]], "Implementation: Shared configuration options": [[1, "implementation-shared-configuration-options"]], "Implementation: Support for pre-made initial condition files": [[1, "implementation-support-for-pre-made-initial-condition-files"]], "Implementation: Test case code is easy to alter and rerun": [[1, "implementation-test-case-code-is-easy-to-alter-and-rerun"]], "Implementation: User- and developer-friendly documentation": [[1, "implementation-user-and-developer-friendly-documentation"]], "Implementation: cached outputs": [[0, "implementation-cached-outputs"]], "Implementation: either \u201cnormal\u201d or \u201ccached\u201d versions of a step": [[0, "implementation-either-normal-or-cached-versions-of-a-step"]], "Implementation: name-of-topic-here (same as Requirement)": [[3, "implementation-name-of-topic-here-same-as-requirement"]], "Implementation: selecting whether to use cached outputs": [[0, "implementation-selecting-whether-to-use-cached-outputs"]], "Implementation: unique identifier for cached outputs": [[0, "implementation-unique-identifier-for-cached-outputs"]], "Implementation: updating cached outputs": [[0, "implementation-updating-cached-outputs"]], "In compass framework": [[915, "in-compass-framework"]], "Including a Floodplain": [[340, "including-a-floodplain"]], "Input files": [[914, "input-files"]], "Intel on Anvil": [[948, "intel-on-anvil"]], "Intel on Chrysalis": [[950, "intel-on-chrysalis"]], "Intel on CompyMcNodeFace": [[951, "intel-on-compymcnodeface"]], "Jupyter notebook on remote data": [[953, "jupyter-notebook-on-remote-data"]], "Kuroshio8to60 and Kuroshio12to60": [[895, "kuroshio8to60-and-kuroshio12to60"], [964, "kuroshio8to60-and-kuroshio12to60"]], "Land-ice Framework": [[78, "land-ice-framework"], [925, "land-ice-framework"]], "Landice Framework": [[77, "landice-framework"]], "Landice core": [[312, "landice-core"], [926, "landice-core"]], "Legacy COMPASS": [[919, "legacy-compass"]], "Logging": [[9, "logging"]], "MPAS Cores": [[4, "mpas-cores"], [914, "mpas-cores"]], "MPICH": [[952, "id4"]], "Mache": [[7, "mache"], [7, "id1"]], "Machines": [[337, "machines"], [952, "machines"]], "Making a graph file": [[9, "making-a-graph-file"]], "Making a new test group": [[922, "making-a-new-test-group"], [923, "making-a-new-test-group"]], "Making a new test group and \u201ccosine_bell\u201d test case": [[920, "making-a-new-test-group-and-cosine-bell-test-case"]], "Mesh": [[9, "mesh"], [340, "mesh"], [956, "mesh"]], "Meshes": [[964, "meshes"]], "Metadata": [[964, "metadata"]], "Mirroring MOAB on Chicoma": [[7, "mirroring-moab-on-chicoma"]], "Model": [[9, "model"]], "Modules": [[915, "modules"]], "Modules, env. variables, etc. for E3SM machines": [[7, "modules-env-variables-etc-for-e3sm-machines"]], "Namelist replacements and streams files": [[340, "namelist-replacements-and-streams-files"]], "No MPI from conda-forge": [[952, "no-mpi-from-conda-forge"]], "Norms": [[9, "norms"]], "Ocean core": [[890, "ocean-core"], [958, "ocean-core"]], "Ocean framework": [[340, "ocean-framework"]], "Ocean0": [[970, "ocean0"]], "Ocean1": [[970, "ocean1"]], "Ocean2": [[970, "ocean2"]], "OpenMPI": [[952, "id5"]], "Optional flags": [[916, "optional-flags"]], "Organization of Tests": [[914, "organization-of-tests"]], "Other Machines": [[337, "other-machines"], [952, "other-machines"]], "Output files": [[914, "output-files"]], "Overview": [[915, "overview"]], "Packages": [[915, "packages"]], "Packages and Modules": [[915, "packages-and-modules"]], "Particles": [[340, "particles"]], "Partitioning the mesh": [[9, "partitioning-the-mesh"]], "Performance run": [[970, "performance-run"]], "Perlmutter": [[338, "perlmutter"], [953, "perlmutter"]], "Perlmutter-CPU": [[953, "perlmutter-cpu"]], "Plotting": [[340, "plotting"]], "Provenance": [[9, "provenance"]], "Proxy on LANL Macs": [[917, "proxy-on-lanl-macs"]], "QU, Icos, QUwISC and IcoswISC": [[964, "qu-icos-quwisc-and-icoswisc"]], "QU, QUwISC, Icos and IcoswISC": [[895, "qu-quwisc-icos-and-icoswisc"]], "QU240 and Icos240": [[964, "qu240-and-icos240"]], "QU240 and QUwISC240": [[895, "qu240-and-quwisc240"]], "QUwISC240 and IcoswISC240": [[964, "quwisc240-and-icoswisc240"]], "Quick Start for Developers": [[916, "quick-start-for-developers"]], "Quick Start for Users": [[983, "quick-start-for-users"]], "RRS6to18 and RRSwISC6to18": [[895, "rrs6to18-and-rrswisc6to18"], [964, "rrs6to18-and-rrswisc6to18"]], "Remapping Topography": [[340, "remapping-topography"]], "Remapping topography": [[956, "remapping-topography"]], "Requirement: Ability specify/modify core counts": [[1, "requirement-ability-specify-modify-core-counts"]], "Requirement: Considerations related to running test cases in parallel": [[1, "requirement-considerations-related-to-running-test-cases-in-parallel"]], "Requirement: Easy batch submission": [[1, "requirement-easy-batch-submission"]], "Requirement: Looser, more flexible directory structure": [[1, "requirement-looser-more-flexible-directory-structure"]], "Requirement: Machine-specific data": [[1, "requirement-machine-specific-data"]], "Requirement: Make test cases easy to understand, modify and create": [[1, "requirement-make-test-cases-easy-to-understand-modify-and-create"]], "Requirement: Resolution can be a test case parameter": [[1, "requirement-resolution-can-be-a-test-case-parameter"]], "Requirement: Shared code": [[1, "requirement-shared-code"]], "Requirement: Shared configuration options": [[1, "requirement-shared-configuration-options"]], "Requirement: Support for pre-made initial condition files": [[1, "requirement-support-for-pre-made-initial-condition-files"]], "Requirement: Test case code is easy to alter and rerun": [[1, "requirement-test-case-code-is-easy-to-alter-and-rerun"]], "Requirement: User- and developer-friendly documentation": [[1, "requirement-user-and-developer-friendly-documentation"]], "Requirement: cached outputs": [[0, "requirement-cached-outputs"]], "Requirement: either \u201cnormal\u201d or \u201ccached\u201d versions of a step": [[0, "requirement-either-normal-or-cached-versions-of-a-step"]], "Requirement: name-of-topic-here": [[3, "requirement-name-of-topic-here"]], "Requirement: selecting whether to use cached outputs": [[0, "requirement-selecting-whether-to-use-cached-outputs"]], "Requirement: unique identifier for cached outputs": [[0, "requirement-unique-identifier-for-cached-outputs"]], "Requirement: updating cached outputs": [[0, "requirement-updating-cached-outputs"]], "Requirements": [[0, "requirements"], [1, "requirements"], [3, "requirements"]], "RestartTest": [[317, "restarttest"]], "RunModel": [[314, "runmodel"], [315, "runmodel"], [317, "runmodel"]], "Running MPAS": [[9, "running-mpas"]], "Running a test case": [[983, "running-a-test-case"]], "Running compass from the repo": [[916, "running-compass-from-the-repo"]], "Running the mesh test case": [[921, "running-the-mesh-test-case"]], "Running with a job script": [[983, "running-with-a-job-script"]], "SO12to60 and SOwISC12to60": [[895, "so12to60-and-sowisc12to60"], [964, "so12to60-and-sowisc12to60"]], "Sea surface height adjustment": [[954, "sea-surface-height-adjustment"]], "Set up a compass repository with worktrees: for advanced users": [[916, "set-up-a-compass-repository-with-worktrees-for-advanced-users"]], "Set up a compass repository: for beginners": [[916, "set-up-a-compass-repository-for-beginners"]], "Set up and run": [[922, "set-up-and-run"], [923, "set-up-and-run"]], "Setting config options based on resolution": [[922, "setting-config-options-based-on-resolution"], [922, "id2"]], "Setting the number of tasks and CPUs per task": [[920, "setting-the-number-of-tasks-and-cpus-per-task"]], "Setting up test cases": [[983, "setting-up-test-cases"]], "SetupMesh": [[315, "setupmesh"], [317, "setupmesh"]], "Shared config options": [[964, "shared-config-options"], [966, "shared-config-options"], [980, "shared-config-options"]], "Simulation run": [[970, "simulation-run"]], "Slurm job queueing": [[952, "slurm-job-queueing"]], "SmokeTest": [[317, "smoketest"]], "Solver errors when configuring conda environment": [[917, "solver-errors-when-configuring-conda-environment"]], "Spack": [[7, "spack"]], "Spherical Meshes": [[9, "spherical-meshes"]], "Step attributes": [[914, "step-attributes"]], "Steps": [[914, "steps"]], "Steps for setting up and running an ensmble": [[934, "steps-for-setting-up-and-running-an-ensmble"]], "Steps for setting up and running experiments": [[941, "steps-for-setting-up-and-running-experiments"]], "Summary": [[0, "summary"], [1, "summary"], [3, "summary"]], "Supported Machines": [[337, "supported-machines"], [952, "supported-machines"]], "Supported machines": [[916, "supported-machines"]], "Switching between different compass environments": [[916, "switching-between-different-compass-environments"]], "Switching to an EC30to60 base resolution": [[921, "switching-to-an-ec30to60-base-resolution"]], "Symlink to input files from compass": [[914, "symlink-to-input-files-from-compass"]], "Symlinks": [[9, "symlinks"]], "Symlinks to input files": [[914, "symlinks-to-input-files"]], "Template": [[3, "template"]], "Test Cases": [[984, "test-cases"]], "Test Groups": [[77, "test-groups"], [339, "test-groups"], [914, "test-groups"], [939, "test-groups"]], "Test Suites": [[914, "test-suites"], [983, "test-suites"], [985, "test-suites"]], "Test cases": [[325, "test-cases"], [331, "test-cases"], [895, "test-cases"], [914, "test-cases"], [964, "test-cases"]], "Test groups": [[324, "test-groups"], [899, "test-groups"], [968, "test-groups"]], "Test suites": [[927, "test-suites"], [959, "test-suites"]], "Test-case config files": [[924, "test-case-config-files"]], "TestCase attributes": [[914, "testcase-attributes"]], "Testing": [[0, "testing"], [1, "testing"], [3, "testing"]], "Testing MALI with Albany": [[7, "testing-mali-with-albany"]], "Testing MPAS-Ocean with PETSc": [[7, "testing-mpas-ocean-with-petsc"]], "Testing MPAS-Ocean without PETSc": [[7, "testing-mpas-ocean-without-petsc"]], "Testing and Validation: name-of-topic-here (same as Requirement)": [[3, "testing-and-validation-name-of-topic-here-same-as-requirement"]], "Testing compass": [[7, "testing-compass"]], "Testing spack with Albany": [[7, "testing-spack-with-albany"]], "Testing spack with PETSc (and Netlib LAPACK)": [[7, "testing-spack-with-petsc-and-netlib-lapack"]], "Testing: Ability specify/modify core counts": [[1, "testing-ability-specify-modify-core-counts"]], "Testing: Considerations related to running test cases in parallel": [[1, "testing-considerations-related-to-running-test-cases-in-parallel"]], "Testing: Easy batch submission": [[1, "testing-easy-batch-submission"]], "Testing: Looser, more flexible directory structure": [[1, "testing-looser-more-flexible-directory-structure"]], "Testing: Machine-specific data": [[1, "testing-machine-specific-data"]], "Testing: Make test cases easy to understand, modify and create": [[1, "testing-make-test-cases-easy-to-understand-modify-and-create"]], "Testing: Resolution can be a test case parameter": [[1, "testing-resolution-can-be-a-test-case-parameter"]], "Testing: Shared code": [[1, "testing-shared-code"]], "Testing: Shared configuration options": [[1, "testing-shared-configuration-options"]], "Testing: Support for pre-made initial condition files": [[1, "testing-support-for-pre-made-initial-condition-files"]], "Testing: Test case code is easy to 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"unknown-machines"]], "Updating PIO namelist options": [[9, "updating-pio-namelist-options"]], "Updating a streams file at runtime": [[914, "updating-a-streams-file-at-runtime"]], "Updating namelist options at runtime": [[914, "updating-namelist-options-at-runtime"]], "Updating spack from compass with mache from a remote branch": [[7, "updating-spack-from-compass-with-mache-from-a-remote-branch"]], "Updating the test case and test group": [[923, "updating-the-test-case-and-test-group"]], "User's guide": [[919, null]], "Validating timers": [[9, "validating-timers"]], "Validating variables": [[9, "validating-variables"]], "Validation": [[9, "validation"]], "Varying resolution (or other parameters)": [[922, "varying-resolution-or-other-parameters"], [923, "varying-resolution-or-other-parameters"]], "Versions": [[919, null]], "Vertical coordinate": [[340, "vertical-coordinate"], [957, "vertical-coordinate"]], "Visualize": [[315, "visualize"], [317, "visualize"]], "WC14 and WCwISC14": [[895, "wc14-and-wcwisc14"], [964, "wc14-and-wcwisc14"]], "What the script does": [[916, "what-the-script-does"]], "Where do we update compass dependencies?": [[7, "where-do-we-update-compass-dependencies"]], "Within a test case": [[915, "within-a-test-case"]], "Within a test group": [[915, "within-a-test-group"]], "Within an MPAS core": [[915, "within-an-mpas-core"]], "ais_observations": [[78, "ais-observations"]], "analysis": [[893, "analysis"], [894, "analysis"], [896, "analysis"], [897, "analysis"], [907, "analysis"], [908, "analysis"], [909, "analysis"], [909, "id4"], [909, "id8"], [909, "id12"], [910, "analysis"], [911, "analysis"]], "analysis step": [[966, "analysis-step"], [980, "analysis-step"]], "analysis_test test case": [[895, "analysis-test-test-case"], [964, "analysis-test-test-case"]], "antarctica": [[77, "antarctica"], [313, "antarctica"], [928, "antarctica"]], "atmosphere": [[325, "atmosphere"], [940, "atmosphere"]], "baroclinic_channel": [[339, "baroclinic-channel"], 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"get_e3sm_mesh_names() (in module compass.ocean.tests.global_ocean.metadata)": [[505, "compass.ocean.tests.global_ocean.metadata.get_e3sm_mesh_names", false]], "get_mpas_cores() (in module compass.mpas_cores)": [[64, "compass.mpas_cores.get_mpas_cores", false]], "get_ntasks_from_cell_count() (in module compass.landice.tests.mismipplus.tasks)": [[299, "compass.landice.tests.mismipplus.tasks.get_ntasks_from_cell_count", false]], "get_ntasks_from_cell_count() (in module compass.ocean.tests.global_ocean.tasks)": [[512, "compass.ocean.tests.global_ocean.tasks.get_ntasks_from_cell_count", false]], "get_points() (compass.ocean.tests.parabolic_bowl.viz.viz method)": [[714, "compass.ocean.tests.parabolic_bowl.viz.Viz.get_points", false]], "get_subdivisions() (compass.mesh.icosahedralmeshstep static method)": [[48, "compass.mesh.IcosahedralMeshStep.get_subdivisions", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.forward method)": [[754, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.divergent_2d.forward.forward method)": [[768, "compass.ocean.tests.sphere_transport.divergent_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.nondivergent_2d.forward.forward method)": [[782, "compass.ocean.tests.sphere_transport.nondivergent_2d.forward.Forward.get_timestep_str", false]], "get_timestep_str() (compass.ocean.tests.sphere_transport.rotation_2d.forward.forward method)": [[806, "compass.ocean.tests.sphere_transport.rotation_2d.forward.Forward.get_timestep_str", false]], "globalconvergence (class in compass.ocean.tests.global_convergence)": [[412, "compass.ocean.tests.global_convergence.GlobalConvergence", false]], "globalocean (class in compass.ocean.tests.global_ocean)": [[425, "compass.ocean.tests.global_ocean.GlobalOcean", false]], "gotm (class in compass.ocean.tests.gotm)": [[516, "compass.ocean.tests.gotm.Gotm", false]], "greenland (class in compass.landice.tests.greenland)": [[177, "compass.landice.tests.greenland.Greenland", false]], "gridded_flood_fill() (in module compass.landice.mesh)": [[88, "compass.landice.mesh.gridded_flood_fill", false]], "horizontaladvection (class in compass.ocean.tests.planar_convergence.horizontal_advection)": [[730, "compass.ocean.tests.planar_convergence.horizontal_advection.HorizontalAdvection", false]], "humboldt (class in compass.landice.tests.humboldt)": [[191, "compass.landice.tests.humboldt.Humboldt", false]], "hurricane (class in compass.ocean.tests.hurricane)": [[525, "compass.ocean.tests.hurricane.Hurricane", false]], "hydro (class in compass.ocean.tests.lock_exchange.hydro)": [[640, "compass.ocean.tests.lock_exchange.hydro.Hydro", false]], "hydroradial (class in compass.landice.tests.hydro_radial)": [[202, "compass.landice.tests.hydro_radial.HydroRadial", false]], "hydrovsnonhydro (class in compass.ocean.tests.overflow.hydro_vs_nonhydro)": [[684, "compass.ocean.tests.overflow.hydro_vs_nonhydro.HydroVsNonhydro", false]], "iceshelf2d (class in compass.ocean.tests.ice_shelf_2d)": [[566, "compass.ocean.tests.ice_shelf_2d.IceShelf2d", false]], "icosahedralmeshstep (class in compass.mesh)": [[45, "compass.mesh.IcosahedralMeshStep", false]], "icosmeshfromconfigstep (class in compass.ocean.tests.global_ocean.mesh.qu)": [[494, "compass.ocean.tests.global_ocean.mesh.qu.IcosMeshFromConfigStep", false]], "images_to_movies() (compass.ocean.tests.isomip_plus.viz.plot.movieplotter method)": [[623, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter.images_to_movies", false]], "init (class in compass.ocean.tests.global_convergence.cosine_bell.init)": [[423, "compass.ocean.tests.global_convergence.cosine_bell.init.Init", false]], "init (class in compass.ocean.tests.global_ocean.init)": [[476, "compass.ocean.tests.global_ocean.init.Init", false]], "init (class in compass.ocean.tests.gotm.default.init)": [[523, "compass.ocean.tests.gotm.default.init.Init", false]], "init (class in compass.ocean.tests.hurricane.init)": [[539, "compass.ocean.tests.hurricane.init.Init", false]], "init (class in compass.ocean.tests.planar_convergence.horizontal_advection.init)": [[736, "compass.ocean.tests.planar_convergence.horizontal_advection.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.correlated_tracers_2d.init)": [[757, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.divergent_2d.init)": [[771, "compass.ocean.tests.sphere_transport.divergent_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.nondivergent_2d.init)": [[785, "compass.ocean.tests.sphere_transport.nondivergent_2d.init.Init", false]], "init (class in compass.ocean.tests.sphere_transport.rotation_2d.init)": [[809, "compass.ocean.tests.sphere_transport.rotation_2d.init.Init", false]], "init (class in compass.ocean.tests.tides.init)": [[832, "compass.ocean.tests.tides.init.Init", false]], "init_vertical_coord() (in module compass.ocean.vertical)": [[882, "compass.ocean.vertical.init_vertical_coord", false]], "init_z_level_vertical_coord() (in module compass.ocean.vertical.zlevel)": [[888, "compass.ocean.vertical.zlevel.init_z_level_vertical_coord", false]], "init_z_star_vertical_coord() (in module compass.ocean.vertical.zstar)": [[889, "compass.ocean.vertical.zstar.init_z_star_vertical_coord", false]], "initialstate (class in compass.ocean.tests.baroclinic_channel.initial_state)": [[370, "compass.ocean.tests.baroclinic_channel.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.dam_break.initial_state)": [[390, "compass.ocean.tests.dam_break.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.drying_slope.initial_state)": [[405, "compass.ocean.tests.drying_slope.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.global_ocean.init.initial_state)": [[479, "compass.ocean.tests.global_ocean.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.hurricane.init.initial_state)": [[545, "compass.ocean.tests.hurricane.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.ice_shelf_2d.initial_state)": [[574, "compass.ocean.tests.ice_shelf_2d.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.internal_wave.initial_state)": [[589, "compass.ocean.tests.internal_wave.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.isomip_plus.initial_state)": [[605, "compass.ocean.tests.isomip_plus.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.lock_exchange.initial_state)": [[641, "compass.ocean.tests.lock_exchange.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.merry_go_round.initial_state)": [[653, "compass.ocean.tests.merry_go_round.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.nonhydro.solitary_wave.initial_state)": [[663, "compass.ocean.tests.nonhydro.solitary_wave.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.nonhydro.stratified_seiche.initial_state)": [[674, "compass.ocean.tests.nonhydro.stratified_seiche.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.overflow.initial_state)": [[689, "compass.ocean.tests.overflow.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.parabolic_bowl.initial_state)": [[708, "compass.ocean.tests.parabolic_bowl.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.soma.initial_state)": [[743, "compass.ocean.tests.soma.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.tides.init.initial_state)": [[835, "compass.ocean.tests.tides.init.initial_state.InitialState", false]], "initialstate (class in compass.ocean.tests.ziso.initial_state)": [[875, "compass.ocean.tests.ziso.initial_state.InitialState", false]], "initialstatefrominitmode (class in compass.ocean.tests.overflow.initial_state_from_init_mode)": [[691, "compass.ocean.tests.overflow.initial_state_from_init_mode.InitialStateFromInitMode", false]], "inject_exact_solution() (compass.ocean.tests.parabolic_bowl.viz.viz method)": [[715, "compass.ocean.tests.parabolic_bowl.viz.Viz.inject_exact_solution", false]], "internalwave (class in compass.ocean.tests.internal_wave)": [[584, "compass.ocean.tests.internal_wave.InternalWave", false]], "interp_ais_bedmachine() (in module compass.landice.mesh)": [[89, "compass.landice.mesh.interp_ais_bedmachine", false]], "interp_ais_measures() (in module compass.landice.mesh)": [[90, "compass.landice.mesh.interp_ais_measures", false]], "interpolate_data_to_grid() (compass.ocean.tests.hurricane.init.interpolate_atm_forcing.interpolateatmforcing method)": [[549, "compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing.interpolate_data_to_grid", false]], "interpolate_data_to_grid() (compass.ocean.tests.hurricane.lts.init.topographic_wave_drag.computetopographicwavedrag method)": [[554, "compass.ocean.tests.hurricane.lts.init.topographic_wave_drag.ComputeTopographicWaveDrag.interpolate_data_to_grid", false]], "interpolate_data_to_grid() (compass.ocean.tests.tides.init.interpolate_wave_drag.interpolatewavedrag method)": [[839, "compass.ocean.tests.tides.init.interpolate_wave_drag.InterpolateWaveDrag.interpolate_data_to_grid", false]], "interpolate_geom() (in module compass.ocean.tests.isomip_plus.geom)": [[603, "compass.ocean.tests.isomip_plus.geom.interpolate_geom", false]], "interpolate_ocean_mask() (in module compass.ocean.tests.isomip_plus.geom)": [[604, "compass.ocean.tests.isomip_plus.geom.interpolate_ocean_mask", false]], "interpolateatmforcing (class in compass.ocean.tests.hurricane.init.interpolate_atm_forcing)": [[548, "compass.ocean.tests.hurricane.init.interpolate_atm_forcing.InterpolateAtmForcing", false]], "interpolatewavedrag (class in compass.ocean.tests.tides.init.interpolate_wave_drag)": [[838, "compass.ocean.tests.tides.init.interpolate_wave_drag.InterpolateWaveDrag", false]], "ismip6aisproj2300 (class in compass.landice.tests.ismip6_run.ismip6_ais_proj2300)": [[259, "compass.landice.tests.ismip6_run.ismip6_ais_proj2300.Ismip6AisProj2300", false]], "ismip6forcing (class in compass.landice.tests.ismip6_forcing)": [[219, "compass.landice.tests.ismip6_forcing.Ismip6Forcing", false]], "ismip6run (class in compass.landice.tests.ismip6_run)": [[258, "compass.landice.tests.ismip6_run.Ismip6Run", false]], "isomipplus (class in compass.ocean.tests.isomip_plus)": [[598, "compass.ocean.tests.isomip_plus.IsomipPlus", false]], "isomipplustest (class in compass.ocean.tests.isomip_plus.isomip_plus_test)": [[607, "compass.ocean.tests.isomip_plus.isomip_plus_test.IsomipPlusTest", false]], "isunnguatasermia (class in compass.landice.tests.isunnguata_sermia)": [[265, "compass.landice.tests.isunnguata_sermia.IsunnguataSermia", false]], "kangerlussuaq (class in compass.landice.tests.kangerlussuaq)": [[270, "compass.landice.tests.kangerlussuaq.Kangerlussuaq", false]], "kogebugts (class in compass.landice.tests.koge_bugt_s)": [[275, "compass.landice.tests.koge_bugt_s.KogeBugtS", false]], "label_mesh() (in module compass.ocean.tests.hurricane.lts.mesh.lts_regions)": [[560, "compass.ocean.tests.hurricane.lts.mesh.lts_regions.label_mesh", false]], "landice (class in compass.landice)": [[79, "compass.landice.Landice", false]], "list_cases() (in module compass.list)": [[41, "compass.list.list_cases", false]], "list_machines() (in module compass.list)": [[42, "compass.list.list_machines", false]], "list_suites() (in module compass.list)": [[43, "compass.list.list_suites", false]], "lockexchange (class in compass.ocean.tests.lock_exchange)": [[637, "compass.ocean.tests.lock_exchange.LockExchange", false]], "log_method_call() (in module compass.logging)": [[44, "compass.logging.log_method_call", false]], "loglaw (class in compass.ocean.tests.drying_slope.loglaw)": [[407, "compass.ocean.tests.drying_slope.loglaw.LogLaw", false]], "ltsregionsstep (class in compass.ocean.tests.hurricane.lts.mesh.lts_regions)": [[557, "compass.ocean.tests.hurricane.lts.mesh.lts_regions.LTSRegionsStep", false]], "main() (in module compass.__main__)": [[34, "compass.__main__.main", false]], "make_convergence_arrays() (in module compass.ocean.tests.sphere_transport.process_output)": [[792, "compass.ocean.tests.sphere_transport.process_output.make_convergence_arrays", false]], "make_graph_file() (in module compass.model)": [[61, "compass.model.make_graph_file", false]], "make_jigsaw_mesh() (compass.mesh.icosahedralmeshstep method)": [[49, "compass.mesh.IcosahedralMeshStep.make_jigsaw_mesh", false]], "make_jigsaw_mesh() (compass.mesh.quasiuniformsphericalmeshstep method)": [[54, "compass.mesh.QuasiUniformSphericalMeshStep.make_jigsaw_mesh", false]], "make_region_masks() (in module compass.landice.mesh)": [[91, "compass.landice.mesh.make_region_masks", false]], "mark_cull_cells_for_mismip() (in module compass.landice.tests.mismipplus.setup_mesh)": [[292, "compass.landice.tests.mismipplus.setup_mesh.mark_cull_cells_for_MISMIP", false]], "merrygoround (class in compass.ocean.tests.merry_go_round)": [[646, "compass.ocean.tests.merry_go_round.MerryGoRound", false]], "mesh (class in compass.landice.tests.antarctica.mesh)": [[97, "compass.landice.tests.antarctica.mesh.Mesh", false]], "mesh (class in compass.landice.tests.crane.mesh)": [[116, "compass.landice.tests.crane.mesh.Mesh", false]], "mesh (class in compass.landice.tests.greenland.mesh)": [[180, "compass.landice.tests.greenland.mesh.Mesh", false]], "mesh (class in compass.landice.tests.humboldt.mesh)": [[194, "compass.landice.tests.humboldt.mesh.Mesh", false]], "mesh (class in compass.landice.tests.isunnguata_sermia.mesh)": [[266, "compass.landice.tests.isunnguata_sermia.mesh.Mesh", false]], "mesh (class in compass.landice.tests.kangerlussuaq.mesh)": [[271, "compass.landice.tests.kangerlussuaq.mesh.Mesh", false]], "mesh (class in compass.landice.tests.koge_bugt_s.mesh)": [[276, "compass.landice.tests.koge_bugt_s.mesh.Mesh", false]], "mesh (class in compass.landice.tests.thwaites.mesh)": [[303, "compass.landice.tests.thwaites.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.global_ocean.mesh)": [[489, "compass.ocean.tests.global_ocean.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.hurricane.mesh)": [[561, "compass.ocean.tests.hurricane.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh)": [[759, "compass.ocean.tests.sphere_transport.correlated_tracers_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.divergent_2d.mesh)": [[773, "compass.ocean.tests.sphere_transport.divergent_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.nondivergent_2d.mesh)": [[787, "compass.ocean.tests.sphere_transport.nondivergent_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.sphere_transport.rotation_2d.mesh)": [[811, "compass.ocean.tests.sphere_transport.rotation_2d.mesh.Mesh", false]], "mesh (class in compass.ocean.tests.tides.mesh)": [[845, "compass.ocean.tests.tides.mesh.Mesh", false]], "meshgen (class in compass.landice.tests.antarctica.mesh_gen)": [[99, "compass.landice.tests.antarctica.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.crane.mesh_gen)": [[118, "compass.landice.tests.crane.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.greenland.mesh_gen)": [[182, "compass.landice.tests.greenland.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.humboldt.mesh_gen)": [[196, "compass.landice.tests.humboldt.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.isunnguata_sermia.mesh_gen)": [[268, "compass.landice.tests.isunnguata_sermia.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.kangerlussuaq.mesh_gen)": [[273, "compass.landice.tests.kangerlussuaq.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.koge_bugt_s.mesh_gen)": [[278, "compass.landice.tests.koge_bugt_s.mesh_gen.MeshGen", false]], "meshgen (class in compass.landice.tests.thwaites.mesh_gen)": [[305, "compass.landice.tests.thwaites.mesh_gen.MeshGen", false]], "meshmodifications (class in compass.landice.tests.mesh_modifications)": [[280, "compass.landice.tests.mesh_modifications.MeshModifications", false]], "mismipplus (class in compass.landice.tests.mismipplus)": [[283, "compass.landice.tests.mismipplus.MISMIPplus", false]], "misomip (class in compass.ocean.tests.isomip_plus.misomip)": [[610, "compass.ocean.tests.isomip_plus.misomip.Misomip", false]], "module": [[80, "module-compass.landice.ais_observations", false], [532, "module-compass.ocean.tests.hurricane.configure", false], [825, "module-compass.ocean.tests.tides.configure", false]], "movieplotter (class in compass.ocean.tests.isomip_plus.viz.plot)": [[622, "compass.ocean.tests.isomip_plus.viz.plot.MoviePlotter", false]], "mpas_flood_fill() (in module compass.landice.mesh)": [[92, "compass.landice.mesh.mpas_flood_fill", false]], "mpascore (class in compass)": [[10, "compass.MpasCore", false]], "nondivergent2d (class in compass.ocean.tests.sphere_transport.nondivergent_2d)": [[776, "compass.ocean.tests.sphere_transport.nondivergent_2d.Nondivergent2D", false]], "nonhydro (class in compass.ocean.tests.lock_exchange.nonhydro)": [[643, "compass.ocean.tests.lock_exchange.nonhydro.Nonhydro", false]], "nonhydro (class in compass.ocean.tests.nonhydro)": [[657, "compass.ocean.tests.nonhydro.Nonhydro", false]], "nonhydro (class in compass.ocean.tests.overflow.nonhydro)": [[693, "compass.ocean.tests.overflow.nonhydro.Nonhydro", false]], "ocean (class in compass.ocean)": [[341, "compass.ocean.Ocean", false]], "oceanbasal (class in compass.landice.tests.ismip6_forcing.ocean_basal)": [[237, "compass.landice.tests.ismip6_forcing.ocean_basal.OceanBasal", false]], "oceangraphpartition (class in compass.ocean.tests.global_ocean.files_for_e3sm.ocean_graph_partition)": [[446, "compass.ocean.tests.global_ocean.files_for_e3sm.ocean_graph_partition.OceanGraphPartition", false]], "oceaninitialcondition (class in compass.ocean.tests.global_ocean.files_for_e3sm.ocean_initial_condition)": [[448, "compass.ocean.tests.global_ocean.files_for_e3sm.ocean_initial_condition.OceanInitialCondition", false]], "oceanmesh (class in compass.ocean.tests.global_ocean.files_for_e3sm.ocean_mesh)": [[450, "compass.ocean.tests.global_ocean.files_for_e3sm.ocean_mesh.OceanMesh", false]], "oceanthermal (class in 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"_init": 920, "_legaci": 39, "_log_and_run_test": 921, "_lt": 966, "_mesh": 920, "_min_task": 920, "_moc_masks_and_transect": 895, "_namelist": 920, "_ntask": 920, "_nu_": [914, 922], "_ocean": 8, "_ocean_baroclinic_channel": 8, "_ocean_baroclinic_channel_default": 8, "_output": 920, "_plot": 922, "_remap_with_ncremap": 330, "_setup_circular_shelf_initial_condit": 315, "_setup_dome_initial_condit": [317, 320], "_setup_eismint2_initial_condit": 318, "_setup_hydro_radial_initial_condit": 323, "_setup_step": 920, "_sol": 909, "_sourc": 7, "a0": 971, "a_c": 964, "aav": 895, "abil": [0, 8, 945, 961, 975, 978], "abl": [1, 6, 319, 333, 334, 335, 336, 338, 914, 915, 916, 921, 922, 923, 952], "ablat": 932, "about": [0, 1, 6, 7, 8, 9, 12, 84, 85, 87, 94, 291, 331, 895, 914, 915, 920, 921, 922, 923, 924, 927, 929, 934, 940, 941, 946, 949, 970, 978], "abov": [0, 1, 6, 7, 8, 9, 78, 241, 319, 337, 340, 348, 599, 622, 895, 901, 912, 914, 915, 916, 921, 922, 923, 924, 925, 928, 931, 936, 941, 942, 947, 956, 963, 964, 966, 970, 976, 983, 985], "abruptli": [967, 970], "absenc": 957, "absolut": [1, 6, 9, 12, 13, 37, 71, 72, 74, 312, 890, 895, 914, 916, 921, 924, 964, 983], "ac": [7, 921], "acceler": [921, 975], "accept": [892, 893], "access": [7, 914, 915, 916, 922, 923, 940, 948, 952, 953], "accommod": [1, 12, 22, 66, 603, 901, 922], "accomplish": [0, 1, 6, 895, 915, 923], "accord": [893, 897, 908, 913, 964, 966, 983], "accordingli": [1, 67, 321, 340, 966], "account": [1, 78, 297, 916, 927, 934, 941, 948, 949, 951, 952, 953, 966, 983], "account_nam": 949, "accountutilizationbyus": 949, "accumul": [932, 933], "accur": [1, 78, 83, 929, 937, 954, 972], "accuraci": 921, "achiev": [0, 48, 923, 945, 954, 966], "acm": [948, 983], "acme_high": 948, "across": [1, 7, 8, 9, 82, 192, 318, 325, 340, 356, 891, 893, 898, 905, 907, 914, 915, 916, 918, 919, 921, 922, 923, 934, 955, 964, 974], "act": [6, 599, 915, 921, 923, 957], "activ": [1, 7, 319, 337, 738, 908, 934, 952, 953, 970, 977, 983], "actual": [1, 3, 6, 7, 9, 78, 83, 313, 319, 326, 331, 895, 914, 916, 921, 922, 929, 941, 946, 962], "ad": [0, 1, 3, 5, 6, 7, 8, 9, 13, 23, 29, 37, 76, 78, 83, 127, 142, 152, 160, 174, 188, 209, 264, 311, 315, 317, 319, 323, 326, 340, 369, 372, 381, 484, 485, 557, 573, 581, 659, 662, 665, 668, 670, 673, 676, 679, 874, 882, 888, 889, 891, 895, 898, 900, 905, 916, 919, 928, 934, 936, 945, 946, 947, 948, 949, 950, 951, 953, 955, 959, 964, 970, 980, 983], "adapt": [929, 934, 946], "adcroft": 957, "add": [1, 3, 6, 7, 8, 9, 11, 13, 14, 15, 16, 17, 18, 28, 29, 33, 51, 56, 60, 152, 160, 260, 319, 321, 337, 340, 348, 356, 448, 504, 659, 670, 895, 914, 915, 916, 918, 920, 921, 922, 923, 924, 932, 934, 953, 963, 964, 970, 975, 976, 978, 979], "add_baroclinic_channel": [920, 922], "add_bedmachine_thk_to_ais_gridded_data": [78, 313], "add_config": [1, 920], "add_cont": 923, "add_cosine_bel": 920, "add_execut": 923, "add_from_packag": 9, "add_gotm": 923, "add_initial_condit": 1, "add_input_fil": [1, 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626, 627, 628, 629, 630, 631, 632, 633, 634, 635, 636, 655, 656, 710, 711, 712, 713, 714, 715, 716, 717, 718, 892, 893, 898, 901, 906, 975], "wave": [966, 980], "wc14": [502, 503, 895, 964], "wc14basemesh": [502, 503], "wcwisc14": [895, 964], "we": 7, "what": 916, "when": 917, "where": 7, "whether": 0, "with_frazil": [877, 878, 879, 913, 982], "withfrazil": [877, 878, 879], "within": [1, 915], "without": 7, "worktre": 916, "write": [68, 356], "write_1d_grid": 881, "write_coeffs_reconstruct": [468, 469], "write_coordinate_fil": 824, "write_to_fil": [552, 556, 842], "writecoeffsreconstruct": [468, 469], "z": 957, "ziso": [339, 867, 868, 869, 870, 871, 872, 873, 874, 875, 876, 877, 878, 879, 913, 982], "ziso_test_cas": 913, "zisotestcas": [868, 869, 870], "zlevel": [885, 886, 887, 888], "zstar": 889}}) \ No newline at end of file diff --git a/latest/tutorials/dev_add_param_study.html b/latest/tutorials/dev_add_param_study.html index 9b23d65f4f..2c7e74ecfe 100644 --- a/latest/tutorials/dev_add_param_study.html +++ b/latest/tutorials/dev_add_param_study.html @@ -14,7 +14,7 @@ - + diff --git a/latest/tutorials/dev_add_rrm.html b/latest/tutorials/dev_add_rrm.html index b2f910e283..7b374848af 100644 --- a/latest/tutorials/dev_add_rrm.html +++ b/latest/tutorials/dev_add_rrm.html @@ -14,7 +14,7 @@ - + diff --git a/latest/tutorials/dev_add_test_group.html b/latest/tutorials/dev_add_test_group.html index bb0a1fa69d..e945b50bfc 100644 --- a/latest/tutorials/dev_add_test_group.html +++ b/latest/tutorials/dev_add_test_group.html @@ -14,7 +14,7 @@ - + diff --git a/latest/tutorials/dev_porting_legacy.html b/latest/tutorials/dev_porting_legacy.html index dd81bc59d0..61d17b76ed 100644 --- a/latest/tutorials/dev_porting_legacy.html +++ b/latest/tutorials/dev_porting_legacy.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/config_files.html b/latest/users_guide/config_files.html index 641db6b615..2e2b729f8c 100644 --- a/latest/users_guide/config_files.html +++ b/latest/users_guide/config_files.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/framework.html b/latest/users_guide/landice/framework.html index 84a0c35498..17411c4075 100644 --- a/latest/users_guide/landice/framework.html +++ b/latest/users_guide/landice/framework.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/index.html b/latest/users_guide/landice/index.html index 377d4f9f05..6bd7a1346b 100644 --- a/latest/users_guide/landice/index.html +++ b/latest/users_guide/landice/index.html @@ -14,8 +14,9 @@ - + + diff --git a/latest/users_guide/landice/suites.html b/latest/users_guide/landice/suites.html index 8e606dd8f3..bc4fab160d 100644 --- a/latest/users_guide/landice/suites.html +++ b/latest/users_guide/landice/suites.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/antarctica.html b/latest/users_guide/landice/test_groups/antarctica.html index 7f1fd9848d..4ec9072df3 100644 --- a/latest/users_guide/landice/test_groups/antarctica.html +++ b/latest/users_guide/landice/test_groups/antarctica.html @@ -14,7 +14,7 @@ - + @@ -233,8 +233,8 @@

mesh_gen attributes, extrapolating fields to avoid interpolation ramps at ice margins, updating mask values, and raising the bed topography at Lake Vostok to ensure a flat ice surface there.

-

Those data files and processing scripts currently live here on Chicoma: -/usr/projects/climate/trhille/data. +

Those data files and processing scripts currently live here on Perlmutter: +/global/cfs/cdirs/fanssie/standard_datasets/AIS_datasets. Eventually that pre-processing could be integrated into a new step in COMPASS, or the processed data files could be added to the server on Anvil and downloaded as needed. However, until then, this test case provides a reproducible workflow diff --git a/latest/users_guide/landice/test_groups/calving_dt_convergence.html b/latest/users_guide/landice/test_groups/calving_dt_convergence.html index fd4793b8b9..88b05abd59 100644 --- a/latest/users_guide/landice/test_groups/calving_dt_convergence.html +++ b/latest/users_guide/landice/test_groups/calving_dt_convergence.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/circular_shelf.html b/latest/users_guide/landice/test_groups/circular_shelf.html index 3f4834baea..d72138a109 100644 --- a/latest/users_guide/landice/test_groups/circular_shelf.html +++ b/latest/users_guide/landice/test_groups/circular_shelf.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/crane.html b/latest/users_guide/landice/test_groups/crane.html index 9143e69a54..81c532525b 100644 --- a/latest/users_guide/landice/test_groups/crane.html +++ b/latest/users_guide/landice/test_groups/crane.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/dome.html b/latest/users_guide/landice/test_groups/dome.html index 1f596dab3b..7936010e86 100644 --- a/latest/users_guide/landice/test_groups/dome.html +++ b/latest/users_guide/landice/test_groups/dome.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/eismint2.html b/latest/users_guide/landice/test_groups/eismint2.html index ba5214936b..2399cad40f 100644 --- a/latest/users_guide/landice/test_groups/eismint2.html +++ b/latest/users_guide/landice/test_groups/eismint2.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/ensemble_generator.html b/latest/users_guide/landice/test_groups/ensemble_generator.html index f6d4409994..5965113792 100644 --- a/latest/users_guide/landice/test_groups/ensemble_generator.html +++ b/latest/users_guide/landice/test_groups/ensemble_generator.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/enthalpy_benchmark.html b/latest/users_guide/landice/test_groups/enthalpy_benchmark.html index f1e991df41..b0f8c9303b 100644 --- a/latest/users_guide/landice/test_groups/enthalpy_benchmark.html +++ b/latest/users_guide/landice/test_groups/enthalpy_benchmark.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/greenland.html b/latest/users_guide/landice/test_groups/greenland.html index 93a1a229be..dbeacee8e1 100644 --- a/latest/users_guide/landice/test_groups/greenland.html +++ b/latest/users_guide/landice/test_groups/greenland.html @@ -14,7 +14,7 @@ - + @@ -149,8 +149,9 @@

greenland

-

The landice/greenland test group runs tests with a coarse (20-km) -Greenland mesh.

+

The landice/greenland test group is used to run tests with a coarse (20-km) +Greenland mesh. +and to create customized variable resolution meshes.

../../../_images/gis_speed.png
@@ -171,16 +172,31 @@

config options

The mesh_gen test case uses the default config options below. The other test cases do not use config options.

-
[mesh]
+
# config options for high_res_mesh test case
+[mesh]
+
+# path to directory containing BedMachine and Measures datasets
+data_path = /global/cfs/cdirs/fanssie/standard_datasets/GIS_datasets/
 
 # number of levels in the mesh
 levels = 10
 
+# Bounds of GIS mesh. If any bound is set
+# to None, the mesh will use the full extent
+# of the gridded dataset.
+x_min = None
+x_max = None
+y_min = None
+y_max = None
+
 # distance from ice margin to cull (km).
 # Set to a value <= 0 if you do not want
 # to cull based on distance from margin.
 cull_distance = 10.0
 
+# number of processors to use for ESMF_RegridWeightGen
+nProcs = 128
+
 # mesh density parameters
 # minimum cell spacing (meters)
 min_spac = 3.e3
@@ -193,12 +209,21 @@ 
config options# distance at which cell spacing = max_spac
 high_dist = 1.e5
 # distance within which cell spacing = min_spac
-low_dist = 5.e4
+low_dist = 1.e4
+# distance at which bed topography has no effect
+high_dist_bed = 1.e5
+# distance within which bed topography has maximum effect
+low_dist_bed = 7.5e4
+# Bed elev beneath which cell spacing is minimized
+low_bed = 50.0
+# Bed elev above which cell spacing is maximized
+high_bed = 100.0
 
 # mesh density functions
 use_speed = True
 use_dist_to_grounding_line = False
 use_dist_to_edge = True
+use_bed = True
@@ -230,6 +255,22 @@

mesh_gen pre-generated 20 km mesh used in the other three test cases because it uses a newer version of Jigsaw. Note that the basal friction optimization is performed separately and is not part of this test case.

+

The test case performs interpolation of observational data from gridded +datasets to the Greenland mesh. This takes care of the peculiarities of +the current gridded compilation dataset (greenland_1km_2024_01_29.epsg3413.icesheetonly.nc), +as well as using conservative remapping directly from the high-resolution +BedMachine v5 and MeASUReS 2006-2010 velocity datasets. There is a fairly +heavy degree of pre-processing done to get the BedMachine and MeASUReS +datasets ready to be used here. The pre-processing includes renaming +variables, setting reasonable _FillValue and missing_value attributes +extrapolating fields to avoid interpolation ramps at ice margins, +updating mask values.

+

Those data files and processing scripts currently live here on Perlmutter: +/global/cfs/cdirs/fanssie/standard_datasets/GIS_datasets/. Eventually +that pre-processing could be integrated into a new step in COMPASS, or +the processed data files could be added to the server on Anvil and downloaded +as needed. However, until then, this test case provides a reproducible workflow +for setting up Greenland meshes at varying resolutions.

diff --git a/latest/users_guide/landice/test_groups/humboldt.html b/latest/users_guide/landice/test_groups/humboldt.html index 42d39cd6dc..af13e535f4 100644 --- a/latest/users_guide/landice/test_groups/humboldt.html +++ b/latest/users_guide/landice/test_groups/humboldt.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/hydro_radial.html b/latest/users_guide/landice/test_groups/hydro_radial.html index fdd2ecbc85..955a05b93a 100644 --- a/latest/users_guide/landice/test_groups/hydro_radial.html +++ b/latest/users_guide/landice/test_groups/hydro_radial.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/index.html b/latest/users_guide/landice/test_groups/index.html index 6cc9496f6f..91b6025f43 100644 --- a/latest/users_guide/landice/test_groups/index.html +++ b/latest/users_guide/landice/test_groups/index.html @@ -14,8 +14,9 @@ - + + diff --git a/latest/users_guide/landice/test_groups/ismip6_forcing.html b/latest/users_guide/landice/test_groups/ismip6_forcing.html index 237c7c9ec9..49594adc90 100644 --- a/latest/users_guide/landice/test_groups/ismip6_forcing.html +++ b/latest/users_guide/landice/test_groups/ismip6_forcing.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/ismip6_run.html b/latest/users_guide/landice/test_groups/ismip6_run.html index f82bfcf413..4baf0b72c2 100644 --- a/latest/users_guide/landice/test_groups/ismip6_run.html +++ b/latest/users_guide/landice/test_groups/ismip6_run.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/isunnguata_sermia.html b/latest/users_guide/landice/test_groups/isunnguata_sermia.html index 1c3c6ed065..9df81924fd 100644 --- a/latest/users_guide/landice/test_groups/isunnguata_sermia.html +++ b/latest/users_guide/landice/test_groups/isunnguata_sermia.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/kangerlussuaq.html b/latest/users_guide/landice/test_groups/kangerlussuaq.html index fbd517b7f4..a6088d93f3 100644 --- a/latest/users_guide/landice/test_groups/kangerlussuaq.html +++ b/latest/users_guide/landice/test_groups/kangerlussuaq.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/koge_bugt_s.html b/latest/users_guide/landice/test_groups/koge_bugt_s.html index c7bcce4a01..7e599bd661 100644 --- a/latest/users_guide/landice/test_groups/koge_bugt_s.html +++ b/latest/users_guide/landice/test_groups/koge_bugt_s.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/mesh_modifications.html b/latest/users_guide/landice/test_groups/mesh_modifications.html index 7e21cf19c9..bbe3d580dc 100644 --- a/latest/users_guide/landice/test_groups/mesh_modifications.html +++ b/latest/users_guide/landice/test_groups/mesh_modifications.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/mismipplus.html b/latest/users_guide/landice/test_groups/mismipplus.html index f0137f9ad8..090fd01821 100644 --- a/latest/users_guide/landice/test_groups/mismipplus.html +++ b/latest/users_guide/landice/test_groups/mismipplus.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/landice/test_groups/thwaites.html b/latest/users_guide/landice/test_groups/thwaites.html index b3cec40294..c25eece371 100644 --- a/latest/users_guide/landice/test_groups/thwaites.html +++ b/latest/users_guide/landice/test_groups/thwaites.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/machines/anvil.html b/latest/users_guide/machines/anvil.html index 1a8861b469..6325160d97 100644 --- a/latest/users_guide/machines/anvil.html +++ b/latest/users_guide/machines/anvil.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/machines/chicoma.html b/latest/users_guide/machines/chicoma.html index 8940a900a4..93f07754ce 100644 --- a/latest/users_guide/machines/chicoma.html +++ b/latest/users_guide/machines/chicoma.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/machines/chrysalis.html b/latest/users_guide/machines/chrysalis.html index 6c812d8fdf..8dcb568b46 100644 --- a/latest/users_guide/machines/chrysalis.html +++ b/latest/users_guide/machines/chrysalis.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/machines/compy.html b/latest/users_guide/machines/compy.html index 20d431d44f..4e6f598755 100644 --- a/latest/users_guide/machines/compy.html +++ b/latest/users_guide/machines/compy.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/machines/index.html b/latest/users_guide/machines/index.html index 184cf85b27..51d5da9a0e 100644 --- a/latest/users_guide/machines/index.html +++ b/latest/users_guide/machines/index.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/machines/perlmutter.html b/latest/users_guide/machines/perlmutter.html index b0e5a6012a..86ee154993 100644 --- a/latest/users_guide/machines/perlmutter.html +++ b/latest/users_guide/machines/perlmutter.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/framework/ice_shelf.html b/latest/users_guide/ocean/framework/ice_shelf.html index 2999173c2a..ea0ca5af19 100644 --- a/latest/users_guide/ocean/framework/ice_shelf.html +++ b/latest/users_guide/ocean/framework/ice_shelf.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/framework/index.html b/latest/users_guide/ocean/framework/index.html index 75ab14056a..e8bc959977 100644 --- a/latest/users_guide/ocean/framework/index.html +++ b/latest/users_guide/ocean/framework/index.html @@ -14,8 +14,9 @@ - + + diff --git a/latest/users_guide/ocean/framework/mesh.html b/latest/users_guide/ocean/framework/mesh.html index 9348acca41..eae0635193 100644 --- a/latest/users_guide/ocean/framework/mesh.html +++ b/latest/users_guide/ocean/framework/mesh.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/framework/vertical.html b/latest/users_guide/ocean/framework/vertical.html index 1634750d44..2cd9e1864c 100644 --- a/latest/users_guide/ocean/framework/vertical.html +++ b/latest/users_guide/ocean/framework/vertical.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/index.html b/latest/users_guide/ocean/index.html index 3229dd224d..4d98e9f183 100644 --- a/latest/users_guide/ocean/index.html +++ b/latest/users_guide/ocean/index.html @@ -14,8 +14,9 @@ - + + diff --git a/latest/users_guide/ocean/suites.html b/latest/users_guide/ocean/suites.html index 8b384356ac..075ad8c14f 100644 --- a/latest/users_guide/ocean/suites.html +++ b/latest/users_guide/ocean/suites.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/test_groups/baroclinic_channel.html b/latest/users_guide/ocean/test_groups/baroclinic_channel.html index a9fe834713..d8411f4177 100644 --- a/latest/users_guide/ocean/test_groups/baroclinic_channel.html +++ b/latest/users_guide/ocean/test_groups/baroclinic_channel.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/test_groups/dam_break.html b/latest/users_guide/ocean/test_groups/dam_break.html index 25b80b43a4..a9416e9025 100644 --- a/latest/users_guide/ocean/test_groups/dam_break.html +++ b/latest/users_guide/ocean/test_groups/dam_break.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/test_groups/drying_slope.html b/latest/users_guide/ocean/test_groups/drying_slope.html index 9443560fa4..76ed37a61d 100644 --- a/latest/users_guide/ocean/test_groups/drying_slope.html +++ b/latest/users_guide/ocean/test_groups/drying_slope.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/test_groups/global_convergence.html b/latest/users_guide/ocean/test_groups/global_convergence.html index 12cd230caa..e3d88b8429 100644 --- a/latest/users_guide/ocean/test_groups/global_convergence.html +++ b/latest/users_guide/ocean/test_groups/global_convergence.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/test_groups/global_ocean.html b/latest/users_guide/ocean/test_groups/global_ocean.html index 97c73da00a..4757a36f28 100644 --- a/latest/users_guide/ocean/test_groups/global_ocean.html +++ b/latest/users_guide/ocean/test_groups/global_ocean.html @@ -14,7 +14,7 @@ - + diff --git a/latest/users_guide/ocean/test_groups/gotm.html b/latest/users_guide/ocean/test_groups/gotm.html index 889244efba..167fa21b4f 100644 --- a/latest/users_guide/ocean/test_groups/gotm.html +++ b/latest/users_guide/ocean/test_groups/gotm.html @@ -14,7 +14,7 @@ - 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