| Time | Description |
|---|---|
| 10:00-10:30 | Jenni Hultman: Introduction |
| 10:30-10:45 | Antti Karkman: Basic usage of computing service at CSC |
| 10:45-11:15 | Antti Karkman: Working with the command line - hands-on |
| 11:15-11:45 | Antti Karkman: Sequencing 101 |
| 11.45-12:00 | Antti Karkman: Setting up the course folder |
| 12:00-13:00 | Lunch 🍽️ |
| 13:00-13:30 | Jenni Hultman: Seq trimming and QC lecture |
| 13:30-14:30 | ALL: Hands-on QC and trimming and MBDP coffee break at 14:00 |
| 14:30-14:45 | Jenni Hultman: Assembly lecture |
| 14:45-16:00 | ALL: Assembly hands-on |
| Time | Description |
|---|---|
| All-day | Reading: Assembling the perfect bacterial genome using Oxford Nanopore and Illumina sequencing |
| Time | Description |
|---|---|
| 10:00-10:30 | Jenni Hultman: Assembly QC lecture |
| 10:30-11:00 | ALL: Assembly QC hands-on |
| 11:00-11:30 | Antti Karkman: Annotation lecture |
| 11:30-12:00 | ALL: Annotation hands-on |
| 12:00-13:00 | Lunch 🍽️ |
| 13:00-16:00 | Jenni Hultman:KBase tutorial and hands-on |
| Time | Description |
|---|---|
| All-day | Reading: Next-generation microbiology: from comparative genomics to gene function |
| Time | Description |
|---|---|
| 10.00-10.30 | Antti Karkman: Introduction to Anvi'o |
| 10.30-12:00 | ALL: Pangenomics hands-on |
| 12:00-13:00 | Lunch 🍽️ |
| 13:00-15:00 | ALL: Population genomics hands-on cont' and MBDP coffee break at 14:00 |
| 15:00-16:00 | Q&A & Feedback |